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Search term: YDR289C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RTT103
SGD link S000002697
Alternative ID YDR289C
Description Protein that interacts with exonuclease Rat1p and Rai1p and plays a role in transcription termination by RNA polymerase II, has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition
Synonyms YDR289C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2669 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Regulator of nuclear mRNA

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g26990 GI:15232056
Arabidopsis thaliana (Ath) At5g10060 GI:15238049
Arabidopsis thaliana (Ath) At5g65180 GI:18424920
Caenorhabditis elegans (Cel) CE00040 GI:17551944
Caenorhabditis elegans (Cel) CE09941 GI:17507175
Drosophila melanogaster (Dme) 7292210 GI:7292210 Q9W039
Drosophila melanogaster (Dme) 7298456 GI:7298456
Homo sapiens (Hsa) Hs11034845
(RPRD1B)		 GI:11034845 Q9NQG5
Homo sapiens (Hsa) Hs18545925 GI:18545925
Homo sapiens (Hsa) Hs21361709 GI:11424808
Homo sapiens (Hsa) HsM8922575 GI:8922575
Saccharomyces cerevisiae (Sce) YDR289c
(S000002697)		 GI:6320496 Q05543
Schizosaccharomyces pombe (Spo) SPBC337.03 GI:19112196 O74814
Encephalitozoon cuniculi (Ecu) ECU01g0620 GI:19075072


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000002697
GO:0005634 nucleus C
IDA
SpoSPBC337.03
GO:0005829 cytosol C
IDA
SpoSPBC337.03
GO:0003674 molecular_function F
ND
AthAt5g10060
At5g65180
At3g26990
SceS000002697
SpoSPBC337.03
GO:0008150 biological_process P
ND
AthAt5g65180
At3g26990
At5g10060
GO:0010526 negative regulation of transposition,
RNA-mediated		 P
IMP
SceS000002697
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IPI
SceS000002697
ISS
SpoSPBC337.03

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
23081

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPRD1A GI:21361709
Pan troglodytes (Ptr) RPRD1A GI:114672847
Canis familiaris (Cfa) RPRD1A GI:73961259
Mus musculus (Mmu) Rprd1a
(MGI:2385066)		 GI:21450083 Q8VDS4
Rattus norvegicus (Rno) Rprd1a GI:109506377
Gallus gallus (Gga) RCJMB04_3f10 GI:71896588
Caenorhabditis elegans (Cel) cids-1
(CE38771;
WBGene00015347)		 GI:86562618
Schizosaccharomyces pombe (Spo) SPBC337.03 GI:19112196 O74814
Saccharomyces cerevisiae (Sce) RTT103
(S000002697)		 GI:6320496 Q05543
Kluyveromyces lactis (Kla) KLLA0C10758g GI:50305439
Eremothecium gossypii (Ego) AGOS_AAL081C GI:45184743
Magnaporthe grisea (Mgr) MGG_06877 GI:145605764
Neurospora crassa (Ncr) NCU04116.1 GI:32405686
Arabidopsis thaliana (Ath) AT3G26990 GI:30688588
Oryza sativa (Osa) Os12g0126800 GI:115487128
Oryza sativa (Osa) Os11g0130100 GI:115483973


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2385066
SceS000002697
GO:0005634 nucleus C
IDA
SpoSPBC337.03
GO:0005829 cytosol C
IDA
SpoSPBC337.03
GO:0003674 molecular_function F
ND
AthAt3g26990
MmuMGI:2385066
SceS000002697
SpoSPBC337.03
GO:0006396 RNA processing P
IMP
CelWBGene00015347
GO:0008150 biological_process P
ND
AthAt3g26990
MmuMGI:2385066
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00015347
GO:0010526 negative regulation of transposition,
RNA-mediated		 P
IMP
SceS000002697
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IPI
SceS000002697
ISS
SpoSPBC337.03
GO:0031124 mRNA 3'-end processing P
IMP
CelWBGene00015347
GO:0045132 meiotic chromosome segregation P
IMP
CelWBGene00015347

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1425

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga744 ENSANGP00000006910
Anopheles gambiae (Aga) aga743 ENSANGP00000028654
Ashbya gossypii (Ago) ago106 AAL081C
Arabidopsis thaliana (Ath) ath15049 At3g26990.1
Arabidopsis thaliana (Ath) ath23206 At5g10060.1
Arabidopsis thaliana (Ath) ath28668 At5g65180.1
Arabidopsis thaliana (Ath) ath28669 At5g65180.2
Caenorhabditis elegans (Cel) cel864 C02F5.4
(CE38771;
WBGene00015347)
Candida glabrata (Cgl) cgl2118 CAGL0H01221g
Debaryomyces hansenii (Dha) dha623 DEHA0A13926g
Drosophila melanogaster (Dme) dme7562 CG9018-PA
(FBgn0035318)
Drosophila melanogaster (Dme) dme7563 CG9018-PB
(FBgn0035318)
Danio rerio (Dre) dre6057 ENSDARP00000018593
Encephalitozoon cuniculi (Ecu) ecu1709 19075072
Takifugu rubripes (Fru) fru12912 SINFRUP00000139890
Takifugu rubripes (Fru) fru32580 SINFRUP00000147282
Takifugu rubripes (Fru) fru19542 SINFRUP00000158975
Takifugu rubripes (Fru) fru32581 SINFRUP00000167389
Gallus gallus (Gga) gga12128 ENSGALP00000010965
(RCJMB04_1d17)		 Q5F4B4
Gallus gallus (Gga) gga10718 ENSGALP00000021401
(RCJMB04_3f10)
Homo sapiens (Hsa) hsa20193 ENSP00000217394
Homo sapiens (Hsa) hsa14901 ENSP00000314602
(RPRD1A)		 Q96P16-2
Homo sapiens (Hsa) hsa14899 ENSP00000337476
(RPRD1A)		 Q96P16-3
Homo sapiens (Hsa) hsa14898 ENSP00000349955
(RPRD1A)		 Q96P16-1
Kluyveromyces lactis (Kla) kla1678 KLLA0C10758g
Mus musculus (Mmu) mmu15906 ENSMUSP00000029180
(MGI:1917720)		 Q9CSU0-1
Mus musculus (Mmu) mmu12414 ENSMUSP00000043618
(MGI:2385066)		 Q8VDS4
Neurospora crassa (Ncr) ncr3992 NCU04116.2
Oryza sativa (Osa) osa43760 5486.m00137
Oryza sativa (Osa) osa72641 7060.m00152
Oryza sativa (Osa) osa76916 7420.m00105
Oryza sativa (Osa) osa80348 7506.m00121
Oryza sativa (Osa) osa80431 7508.m00119
Oryza sativa (Osa) osa80711 8108.m00121
Oryza sativa (Osa) osa80763 8110.m00119
Rattus norvegicus (Rno) rno20150 ENSRNOP00000017265
(RGD:1304782)		 B5DEK0
Rattus norvegicus (Rno) rno13863 ENSRNOP00000021624
(RGD:1307374)
Saccharomyces cerevisiae (Sce) sce1342 YDR289C
(S000002697)
Schizosaccharomyces pombe (Spo) spo2333 SPBC337.03 O74814
Yarrowia lipolytica (Yli) yli5246 YALI0E33231g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2385066
MGI:1917720
SceS000002697
GO:0005634 nucleus C
IDA
SpoSPBC337.03
GO:0005829 cytosol C
IDA
SpoSPBC337.03
GO:0003674 molecular_function F
ND
AthAt5g10060
At5g65180
At3g26990
MmuMGI:2385066
MGI:1917720
SceS000002697
SpoSPBC337.03
GO:0006396 RNA processing P
IMP
CelWBGene00015347
GO:0008150 biological_process P
ND
AthAt5g65180
At3g26990
At5g10060
MmuMGI:2385066
MGI:1917720
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00015347
GO:0010526 negative regulation of transposition,
RNA-mediated		 P
IMP
SceS000002697
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IPI
SceS000002697
ISS
SpoSPBC337.03
GO:0031124 mRNA 3'-end processing P
IMP
CelWBGene00015347
GO:0045132 meiotic chromosome segregation P
IMP
CelWBGene00015347

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC337.03
(O74814)		 YDR289C
(S000002697)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000002697
GO:0005634 nucleus C
IDA
SpoSPBC337.03
GO:0005829 cytosol C
IDA
SpoSPBC337.03
GO:0003674 molecular_function F
ND
SceS000002697
SpoSPBC337.03
GO:0010526 negative regulation of transposition,
RNA-mediated		 P
IMP
SceS000002697
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IPI
SceS000002697
ISS
SpoSPBC337.03

Back to the top
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