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Search term: YDR293C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SSD1
SGD link S000002701
Alternative ID YDR293C
Description Protein with a role in maintenance of cellular integrity, interacts with components of the TOR pathway; ssd1 mutant of a clinical S. cerevisiae strain displays elevated virulence
Synonyms YDR293C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2102 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g77680 GI:15220899
Arabidopsis thaliana (Ath) At2g17510 GI:15227854
Arabidopsis thaliana (Ath) At5g02250 GI:15241738
Caenorhabditis elegans (Cel) CE02758
(WBGene00018612)		 GI:17553506 Q09568
Caenorhabditis elegans (Cel) CE05214
(WBGene00001001)		 GI:17538438
Drosophila melanogaster (Dme) 7291934 GI:7291934
Drosophila melanogaster (Dme) 7301148 GI:18488261
Homo sapiens (Hsa) Hs14769950_2 GI:14769950
Homo sapiens (Hsa) Hs19115966 GI:19115966 Q8TF46
Homo sapiens (Hsa) Hs19923416 GI:19923416
Homo sapiens (Hsa) Hs20537912 GI:20537912
Homo sapiens (Hsa) Hs21703358_2 GI:21703358
Homo sapiens (Hsa) Hs22045556 GI:22045556
Saccharomyces cerevisiae (Sce) YDR293c
(S000002701)		 GI:6320499 P24276
Saccharomyces cerevisiae (Sce) YMR287c
(S000004900)		 GI:6323943 P39112
Saccharomyces cerevisiae (Sce) YOL021c
(S000005381)		 GI:6324552 Q08162
Schizosaccharomyces pombe (Spo) SPAC2C4.07c GI:19115422 O14040
Schizosaccharomyces pombe (Spo) SPBC26H8.10 GI:19113445 P37202
Schizosaccharomyces pombe (Spo) SPBC609.01 GI:19113103 O94525
Schizosaccharomyces pombe (Spo) SPCC16C4.09 GI:19075419 O74454
Schizosaccharomyces pombe (Spo) SPCC23B6.06 GI:19075629
Encephalitozoon cuniculi (Ecu) ECU03g0700 GI:19173030 Q8SW47


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000005381
ISS
SpoSPBC26H8.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000005381
ISS
SpoSPBC26H8.10
GO:0005634 nucleus C
IDA
SpoSPBC26H8.10
GO:0005730 nucleolus C
IDA
SceS000005381
GO:0005737 cytoplasm C
IDA
SceS000002701
SpoSPAC2C4.07c
SPBC609.01
SPCC16C4.09
GO:0005739 mitochondrion C
IDA
AthAt5g02250
SceS000004900
S000005381
ISS
SpoSPBC26H8.10
GO:0005759 mitochondrial matrix C
IDA
SceS000004900
GO:0005829 cytosol C
IDA
SpoSPAC2C4.07c
SPBC609.01
SPCC16C4.09
GO:0009507 chloroplast C
IDA
AthAt5g02250
GO:0032153 cell division site C
IDA
SpoSPCC16C4.09
GO:0000049 tRNA binding F
IDA
SceS000005381
IMP
SceS000005381
GO:0000175 3'-5'-exoribonuclease activity F
IDA
AthAt5g02250
SceS000005381
IMP
SceS000005381
ISS
SpoSPBC26H8.10
GO:0003723 RNA binding F
IDA
SceS000002701
ISS
AthAt2g17510
At5g02250
At1g77680
SpoSPAC2C4.07c
SPCC16C4.09
SPBC609.01
GO:0003729 mRNA binding F
IDA
SceS000002701
GO:0004518 nuclease activity F
RCA
SceS000002701
GO:0004521 endoribonuclease activity F
IDA
SceS000005381
IMP
SceS000005381
GO:0004527 exonuclease activity F
RCA
SceS000002701
GO:0004532 exoribonuclease activity F
RCA
SceS000002701
GO:0004540 ribonuclease activity F
ISS
AthAt1g77680
At5g02250
At2g17510
SpoSPBC609.01
SPAC2C4.07c
SPCC16C4.09
GO:0005515 protein binding F
IPI
SpoSPBC26H8.10
GO:0008408 3'-5' exonuclease activity F
RCA
SceS000002701
GO:0008536 Ran GTPase binding F
IPI
SpoSPBC26H8.10
GO:0008859 exoribonuclease II activity F
IDA
SceS000004900
GO:0016788 hydrolase activity, acting on ester
bonds		 F
RCA
SceS000002701
GO:0016796 exonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing
5'-phosphomonoesters		 F
RCA
SceS000002701
GO:0016896 exoribonuclease activity, producing
5'-phosphomonoesters		 F
RCA
SceS000002701
GO:0000003 reproduction P
IMP
CelWBGene00001001
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPBC26H8.10
GO:0000465 exonucleolytic trimming to generate mature 5'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
ISS
SpoSPBC26H8.10
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000005381
GO:0001300 chronological cell aging P
IMP
SceS000002701
GO:0001302 replicative cell aging P
IMP
SceS000002701
GO:0006364 rRNA processing P
IMP
AthAt5g02250
GO:0006401 RNA catabolic process P
IDA
SceS000004900
IMP
SceS000004900
ISS
SpoSPAC2C4.07c
SPCC16C4.09
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC26H8.10
GO:0007051 spindle organization P
IMP
SpoSPBC26H8.10
GO:0007346 regulation of mitotic cell cycle P
IMP
SpoSPBC26H8.10
GO:0008150 biological_process P
ND
SpoSPBC609.01
GO:0009658 chloroplast organization P
IMP
AthAt5g02250
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g02250
GO:0009826 unidimensional cell growth P
IMP
SpoSPCC16C4.09
GO:0016073 snRNA metabolic process P
RCA
SceS000005381
GO:0016075 rRNA catabolic process P
IMP
SceS000005381
GO:0031505 fungal-type cell wall organization P
IGI
SceS000002701
GO:0032853 positive regulation of Ran GTPase
activity		 P
IMP
SpoSPBC26H8.10
GO:0033554 cellular response to stress P
IEP
SpoSPAC2C4.07c
GO:0034475 U4 snRNA 3'-end processing P
RCA
SceS000005381
GO:0034613 cellular protein localization P
IGI
SpoSPCC16C4.09
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00001001
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00001001
GO:0043144 snoRNA processing P
RCA
SceS000005381
GO:0043628 ncRNA 3'-end processing P
IMP
SceS000005381
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000005381
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000005381
GO:0070651 nonfunctional rRNA decay P
IMP
SceS000005381
GO:0071028 nuclear mRNA surveillance P
IMP
SceS000005381
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IMP
SceS000005381
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000005381
IGI
SceS000005381
IMP
SceS000005381
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process		 P
IMP
SceS000005381
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IC
SceS000005381
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000005381

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68649

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SSD1
(S000002701)		 GI:6320499 P24276
Kluyveromyces lactis (Kla) KLLA0C10571g GI:50305423
Eremothecium gossypii (Ego) AGOS_AAL072C GI:45184752
Magnaporthe grisea (Mgr) MGG_08084 GI:145612079
Neurospora crassa (Ncr) NCU01197.1 GI:32412420