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Search term: YDR311W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TFB1
SGD link S000002719
Alternative ID YDR311W
Description Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair, target for transcriptional activators
Synonyms YDR311W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2074 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g55750 GI:15222769
Arabidopsis thaliana (Ath) At3g61420 GI:15233107
Caenorhabditis elegans (Cel) CE18097 GI:17541742
Drosophila melanogaster (Dme) 7303190 GI:7303190
Homo sapiens (Hsa) Hs22061192 GI:22061192
Homo sapiens (Hsa) Hs4885365 GI:4885365 P32780
Saccharomyces cerevisiae (Sce) YDR311w
(S000002719)		 GI:6320517 P32776
Schizosaccharomyces pombe (Spo) SPAC16E8.11c GI:19115135 O13745


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000112 nucleotide-excision repair factor 3
complex		 C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0000439 core TFIIH complex C
IDA
SceS000002719
GO:0005575 cellular_component C
ND
AthAt3g61420
At1g55750
GO:0005675 holo TFIIH complex C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0005737 cytoplasm C
IDA
SpoSPAC16E8.11c
GO:0005829 cytosol C
IDA
SpoSPAC16E8.11c
GO:0003674 molecular_function F
ND
AthAt3g61420
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000002719
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000002719
GO:0000717 nucleotide-excision repair, DNA duplex
unwinding		 P
ISS
SpoSPAC16E8.11c
GO:0006289 nucleotide-excision repair P
IMP
SceS000002719
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC16E8.11c
GO:0008150 biological_process P
ND
AthAt3g61420
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000002719
GO:0045449 regulation of transcription P
ISS
SpoSPAC16E8.11c
GO:0070816 phosphorylation of RNA polymerase II C-terminal
domain		 P
IDA
SceS000002719

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38765

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) tfb1
(SPAC16E8.11c)		 GI:19115135 O13745
Saccharomyces cerevisiae (Sce) TFB1
(S000002719)		 GI:6320517 P32776
Kluyveromyces lactis (Kla) KLLA0C14630g GI:50305789
Eremothecium gossypii (Ego) AGOS_AAL042W GI:45184782
Magnaporthe grisea (Mgr) MGG_03192 GI:145608346
Neurospora crassa (Ncr) NCU05423.1 GI:32409595


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000112 nucleotide-excision repair factor 3
complex		 C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0000439 core TFIIH complex C
IDA
SceS000002719
GO:0005675 holo TFIIH complex C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0005737 cytoplasm C
IDA
SpoSPAC16E8.11c
GO:0005829 cytosol C
IDA
SpoSPAC16E8.11c
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000002719
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000002719
GO:0000717 nucleotide-excision repair, DNA duplex
unwinding		 P
ISS
SpoSPAC16E8.11c
GO:0006289 nucleotide-excision repair P
IMP
SceS000002719
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC16E8.11c
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000002719
GO:0045449 regulation of transcription P
ISS
SpoSPAC16E8.11c
GO:0070816 phosphorylation of RNA polymerase II C-terminal
domain		 P
IDA
SceS000002719

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3377

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8131 ENSANGP00000012561
Ashbya gossypii (Ago) ago145 AAL042W
Arabidopsis thaliana (Ath) ath4911 At1g55750.1
Arabidopsis thaliana (Ath) ath17581 At3g61420.1
Caenorhabditis elegans (Cel) cel13182 R02D3.3
(CE36601;
WBGene00019821)
Candida glabrata (Cgl) cgl3472 CAGL0J10934g
Cryptococcus neoformans (Cne) cne5427 179.m00280
Dictyostelium discoideum (Ddi) ddi11478 DDB0231031
Debaryomyces hansenii (Dha) dha3410 DEHA0E03905g
Drosophila melanogaster (Dme) dme5067 CG8151-PA
(FBgn0033929)
Drosophila melanogaster (Dme) dme5066 CG8151-PB
(FBgn0033929)
Drosophila melanogaster (Dme) dme5068 CG8151-PC
(FBgn0033929)
Danio rerio (Dre) dre27990 ENSDARP00000038901
(zgc:92126)		 Q66I03
Takifugu rubripes (Fru) fru26362 SINFRUP00000141666
Gallus gallus (Gga) gga18855 ENSGALP00000010132
(GTF2H1)
Homo sapiens (Hsa) hsa5285 ENSP00000265963
(GTF2H1)		 P32780
Kluyveromyces lactis (Kla) kla1854 KLLA0C14630g
Mus musculus (Mmu) mmu24017 ENSMUSP00000006774
(MGI:1277216)		 Q9DBA9
Neurospora crassa (Ncr) ncr5266 NCU05423.2
Oryza sativa (Osa) osa20183 3520.m00118
Rattus norvegicus (Rno) rno1925 ENSRNOP00000017342
(RGD:1308225)
Saccharomyces cerevisiae (Sce) sce1364 YDR311W
(S000002719)
Schizosaccharomyces pombe (Spo) spo438 SPAC16E8.11c O13745
Yarrowia lipolytica (Yli) yli1254 YALI0B12452g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000112 nucleotide-excision repair factor 3
complex		 C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0000439 core TFIIH complex C
IDA
SceS000002719
GO:0005575 cellular_component C
ND
AthAt3g61420
At1g55750
GO:0005634 nucleus C
IDA
MmuMGI:1277216
GO:0005675 holo TFIIH complex C
IDA
SceS000002719
ISS
DmeFBgn0033929
SpoSPAC16E8.11c
GO:0005737 cytoplasm C
IDA
SpoSPAC16E8.11c
GO:0005829 cytosol C
IDA
SpoSPAC16E8.11c
GO:0003674 molecular_function F
ND
AthAt3g61420
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000002719
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000002719
ISS
DmeFBgn0033929
SpoSPAC16E8.11c
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000002719
GO:0000003 reproduction P
IMP
CelWBGene00019821
GO:0000717 nucleotide-excision repair, DNA duplex
unwinding		 P
ISS
SpoSPAC16E8.11c
GO:0006289 nucleotide-excision repair P
IMP
SceS000002719
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
DmeFBgn0033929
SpoSPAC16E8.11c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00019821
GO:0008150 biological_process P
ND
AthAt3g61420
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00019821
GO:0010171 body morphogenesis P
IMP
CelWBGene00019821
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000002719
GO:0040002 collagen and cuticulin-based cuticle
development		 P
IMP
CelWBGene00019821
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00019821
GO:0040011 locomotion P
IMP
CelWBGene00019821
GO:0045449 regulation of transcription P
ISS
SpoSPAC16E8.11c
GO:0070816 phosphorylation of RNA polymerase II C-terminal
domain		 P
IDA
SceS000002719

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC16E8.11c
(O13745)		 YDR311W
(S000002719)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000112 nucleotide-excision repair factor 3
complex		 C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0000439 core TFIIH complex C
IDA
SceS000002719
GO:0005675 holo TFIIH complex C
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0005737 cytoplasm C
IDA
SpoSPAC16E8.11c
GO:0005829 cytosol C
IDA
SpoSPAC16E8.11c
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000002719
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000002719
ISS
SpoSPAC16E8.11c
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000002719
GO:0000717 nucleotide-excision repair, DNA duplex
unwinding		 P
ISS
SpoSPAC16E8.11c
GO:0006289 nucleotide-excision repair P
IMP
SceS000002719
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC16E8.11c
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000002719
GO:0045449 regulation of transcription P
ISS
SpoSPAC16E8.11c
GO:0070816 phosphorylation of RNA polymerase II C-terminal
domain		 P
IDA
SceS000002719

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GO info in one table:

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