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Search term: YDR312W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SSF2
SGD link S000002720
Alternative ID YDR312W
Description Protein required for ribosomal large subunit maturation, functionally redundant with Ssf1p; member of the Brix family
Synonyms YDR312W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2963 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA-binding protein required for 60S ribosomal subunit biogenesis

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g61770 GI:15240351
Caenorhabditis elegans (Cel) CE18041_1 GI:17508181
Drosophila melanogaster (Dme) 7300704
(FBgn0010770)		 GI:17136906 Q9VDE5
Homo sapiens (Hsa) Hs9910566 GI:9910566
Saccharomyces cerevisiae (Sce) YDR312w
(S000002720)		 GI:6320518 Q12153
Saccharomyces cerevisiae (Sce) YHR066w
(S000001108)		 GI:6321857 P38789
Schizosaccharomyces pombe (Spo) SPAC6B12.01 GI:19114668


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g61770
DmeFBgn0010770
GO:0005730 nucleolus C
IDA
SceS000002720
S000001108
ISS
SceS000002720
GO:0003674 molecular_function F
ND
DmeFBgn0010770
GO:0019843 rRNA binding F
IPI
SceS000002720
S000001108
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001108
S000002720
IPI
SceS000001108
ISS
SceS000002720
GO:0000747 conjugation with cellular fusion P
IGI
SceS000001108
S000002720
GO:0002164 larval development P
IMP
DmeFBgn0010770
GO:0007444 imaginal disc development P
IMP
DmeFBgn0010770
GO:0008361 regulation of cell size P
IMP
SceS000001108
GO:0048477 oogenesis P
IMP
DmeFBgn0010770

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5690

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PPAN-P2RY11 GI:99028871
Pan troglodytes (Ptr) PPAN-P2RY11 GI:114675282
Canis familiaris (Cfa) PPAN-P2RY11 GI:73986991
Mus musculus (Mmu) Ppan
(MGI:2178445)		 GI:21704228 Q8BYM4
Rattus norvegicus (Rno) Ppan
(RGD:1306325)		 GI:58865536
Drosophila melanogaster (Dme) ppan
(FBgn0010770)		 GI:17136906 Q9VDE5
Anopheles gambiae (Aga) AgaP_AGAP004556 GI:118784644
Caenorhabditis elegans (Cel) lpd-6
(CE37030;
WBGene00003062)		 GI:71988785
Schizosaccharomyces pombe (Spo) SPAC1B9.03c GI:19114668 O14206
Saccharomyces cerevisiae (Sce) SSF2
(S000002720)		 GI:6320518 Q12153
Saccharomyces cerevisiae (Sce) SSF1
(S000001108)		 GI:6321857 P38789
Kluyveromyces lactis (Kla) KLLA0C14586g GI:50305785
Eremothecium gossypii (Ego) AGOS_AAL040W GI:45184784
Magnaporthe grisea (Mgr) MGG_00087 GI:39975533
Neurospora crassa (Ncr) NCU04503.1 GI:32406486
Arabidopsis thaliana (Ath) PPAN GI:30697571
Oryza sativa (Osa) Os03g0343700 GI:115452957


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthPPAN
DmeFBgn0010770
GO:0005634 nucleus C
ISO
MmuMGI:2178445
GO:0005730 nucleolus C
IDA
SceS000002720
S000001108
SpoSPAC1B9.03c
ISS
SceS000002720
SpoSPAC1B9.03c
GO:0003674 molecular_function F
ND
DmeFBgn0010770
MmuMGI:2178445
GO:0019843 rRNA binding F
IPI
SceS000002720
S000001108
ISS
SpoSPAC1B9.03c
GO:0000003 reproduction P
IMP
CelWBGene00003062
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001108
S000002720
IPI
SceS000001108
ISS
SceS000002720
SpoSPAC1B9.03c
GO:0000747 conjugation with cellular fusion P
IGI
SceS000001108
S000002720
GO:0001560 regulation of cell growth by extracellular
stimulus		 P
ISO
MmuMGI:2178445
GO:0002119 nematode larval development P
IMP
CelWBGene00003062
GO:0002164 larval development P
IMP
DmeFBgn0010770
GO:0006629 lipid metabolic process P
IMP
CelWBGene00003062
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003062
GO:0007444 imaginal disc development P
IMP
DmeFBgn0010770
GO:0008361 regulation of cell size P
IMP
SceS000001108
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003062
GO:0019915 lipid storage P
IMP
CelWBGene00003062
GO:0040007 growth P
IMP
CelWBGene00003062
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003062
GO:0048477 oogenesis P
IMP
DmeFBgn0010770

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2248

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7108 ENSANGP00000012208
Ashbya gossypii (Ago) ago147 AAL040W
Arabidopsis thaliana (Ath) ath28276 At5g61770.1
Arabidopsis thaliana (Ath) ath28277 At5g61770.2
Arabidopsis thaliana (Ath) ath28278 At5g61770.3
Caenorhabditis elegans (Cel) cel12474 K09H9.6
(CE37030;
WBGene00003062)
Candida glabrata (Cgl) cgl3470 CAGL0J10890g
Cryptococcus neoformans (Cne) cne5252 179.m00101
Dictyostelium discoideum (Ddi) ddi8704 DDB0186541
Debaryomyces hansenii (Dha) dha3622 DEHA0E08591g
Drosophila melanogaster (Dme) dme13634 CG5786-PA
(FBgn0010770)
Danio rerio (Dre) dre27554 ENSDARP00000038241
(ppan)		 Q7ZVK7
Encephalitozoon cuniculi (Ecu) ecu271 19173440
Takifugu rubripes (Fru) fru30127 SINFRUP00000155722
Homo sapiens (Hsa) hsa15589 ENSP00000253107
(PPAN)		 Q9NQ55-1
Homo sapiens (Hsa) hsa15590 ENSP00000340201
(PPAN)		 C9JW41
Kluyveromyces lactis (Kla) kla1852 KLLA0C14586g
Mus musculus (Mmu) mmu27133 ENSMUSP00000004203
(MGI:2178445)		 Q8BYM4
Neurospora crassa (Ncr) ncr4372 NCU04503.2
Plasmodium falciparum (Pfa) pfa2147 PF08_0053
Rattus norvegicus (Rno) rno28079 ENSRNOP00000027974
(RGD:1306325)		 Q5FVQ2
Saccharomyces cerevisiae (Sce) sce1365 YDR312W
(S000002720)
Saccharomyces cerevisiae (Sce) sce2824 YHR066W
(S000001108)
Schizosaccharomyces pombe (Spo) spo466 SPAC1B9.03c O14206
Yarrowia lipolytica (Yli) yli412 YALI0A12155g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g61770
DmeFBgn0010770
GO:0005634 nucleus C
ISO
MmuMGI:2178445
GO:0005730 nucleolus C
IDA
SceS000002720
S000001108
SpoSPAC1B9.03c
ISS
SceS000002720
SpoSPAC1B9.03c
GO:0003674 molecular_function F
ND
DmeFBgn0010770
MmuMGI:2178445
GO:0019843 rRNA binding F
IPI
SceS000002720
S000001108
ISS
SpoSPAC1B9.03c
GO:0000003 reproduction P
IMP
CelWBGene00003062
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001108
S000002720
IPI
SceS000001108
ISS
SceS000002720
SpoSPAC1B9.03c
GO:0000747 conjugation with cellular fusion P
IGI
SceS000001108
S000002720
GO:0001560 regulation of cell growth by extracellular
stimulus		 P
ISO
MmuMGI:2178445
GO:0002119 nematode larval development P
IMP
CelWBGene00003062
GO:0002164 larval development P
IMP
DmeFBgn0010770
GO:0006629 lipid metabolic process P
IMP
CelWBGene00003062
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003062
GO:0007444 imaginal disc development P
IMP
DmeFBgn0010770
GO:0008361 regulation of cell size P
IMP
SceS000001108
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003062
GO:0019915 lipid storage P
IMP
CelWBGene00003062
GO:0040007 growth P
IMP
CelWBGene00003062
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003062
GO:0048477 oogenesis P
IMP
DmeFBgn0010770

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1B9.03c
(O14206)		 YDR312W
(S000002720)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000002720
SpoSPAC1B9.03c
ISS
SceS000002720
SpoSPAC1B9.03c
GO:0019843 rRNA binding F
IPI
SceS000002720
ISS
SpoSPAC1B9.03c
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000002720
ISS
SceS000002720
SpoSPAC1B9.03c
GO:0000747 conjugation with cellular fusion P
IGI
SceS000002720

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GO info in one table:

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