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Search term: YDR378C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM6
SGD link S000002786
Alternative ID YDR378C
Description Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Synonyms YDR378C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1783 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein F

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g43810 GI:15224366
Arabidopsis thaliana (Ath) At3g59810 GI:15232179
Caenorhabditis elegans (Cel) CE22886
(WBGene00003080)		 GI:17510579 Q95XN6
Drosophila melanogaster (Dme) 7291213 GI:7291213
Homo sapiens (Hsa) Hs5901998
(LSM6)		 GI:5901998 P62312
Saccharomyces cerevisiae (Sce) YDR378c
(S000002786)		 GI:6320586
Schizosaccharomyces pombe (Spo) SPAC2F3.17c GI:19115292 Q9UUI1
Encephalitozoon cuniculi (Ecu) ECU06g1140 GI:19074364 Q8SRP0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002786
GO:0005634 nucleus C
IDA
SpoSPAC2F3.17c
ISS
AthAt2g43810
At3g59810
GO:0005688 U6 snRNP C
IDA
SceS000002786
ISS
SpoSPAC2F3.17c
TAS
SceS000002786
GO:0005730 nucleolus C
IDA
SceS000002786
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000002786
ISS
AthAt3g59810
At2g43810
GO:0030532 small nuclear ribonucleoprotein
complex		 C
TAS
HsaLSM6
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0003674 molecular_function F
ND
AthAt3g59810
At2g43810
GO:0003723 RNA binding F
IDA
SceS000002786
IPI
SceS000002786
GO:0005515 protein binding F
IPI
HsaLSM6
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000002786
GO:0002119 nematode larval development P
IMP
CelWBGene00003080
GO:0006401 RNA catabolic process P
RCA
SceS000002786
GO:0008380 RNA splicing P
TAS
HsaLSM6
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003080
GO:0010171 body morphogenesis P
IMP
CelWBGene00003080
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0040002 collagen and cuticulin-based cuticle
development		 P
IMP
CelWBGene00003080
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003080
GO:0040011 locomotion P
IMP
CelWBGene00003080

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38801

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) LSM6
(S000002786)		 GI:82795247
Kluyveromyces lactis (Kla) KLLA0E02530g GI:50308123
Eremothecium gossypii (Ego) AGOS_ACR204C GI:45185890


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002786
GO:0005688 U6 snRNP C
IDA
SceS000002786
TAS
SceS000002786
GO:0005730 nucleolus C
IDA
SceS000002786
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000002786
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002786
GO:0003723 RNA binding F
IDA
SceS000002786
IPI
SceS000002786
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002786
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000002786
GO:0006401 RNA catabolic process P
RCA
SceS000002786
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000002786

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2246

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga723 ENSANGP00000021121
Ashbya gossypii (Ago) ago1251 ACR204C
Arabidopsis thaliana (Ath) ath11580 At2g43810.1
Arabidopsis thaliana (Ath) ath17402 At3g59810.1
Caenorhabditis elegans (Cel) cel20593 Y71G12B.14
(CE22886;
WBGene00003080)
Candida glabrata (Cgl) cgl126 CAGL0A03051g
Cryptococcus neoformans (Cne) cne2776 183.m01717
Dictyostelium discoideum (Ddi) ddi2378 DDB0202447
Debaryomyces hansenii (Dha) dha3183 DEHA0D19789g
Drosophila melanogaster (Dme) dme6238 CG9344-PA
(FBgn0034564)
Encephalitozoon cuniculi (Ecu) ecu1591 19074364
Takifugu rubripes (Fru) fru23707 SINFRUP00000133790
Gallus gallus (Gga) gga17350 ENSGALP00000016207
(LSM6)
Gallus gallus (Gga) gga17351 ENSGALP00000016208
Homo sapiens (Hsa) hsa24707 ENSP00000296581
(LSM6)		 P62312
Kluyveromyces lactis (Kla) kla3061 KLLA0E02530g
Mus musculus (Mmu) mmu26239 ENSMUSP00000049722
(MGI:1925901)		 P62313
Mus musculus (Mmu) mmu4312 ENSMUSP00000075036
Neurospora crassa (Ncr) ncr10010 NCU10352.2
Plasmodium falciparum (Pfa) pfa4330 PF13_0142
Rattus norvegicus (Rno) rno9023 ENSRNOP00000046010
(RGD:1561937)
Rattus norvegicus (Rno) rno14844 ENSRNOP00000050933
(RGD:1561937)
Saccharomyces cerevisiae (Sce) sce1441 YDR378C
(S000002786)
Schizosaccharomyces pombe (Spo) spo2876 SPAC2F3.17c Q9UUI1


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002786
GO:0005634 nucleus C
IDA
SpoSPAC2F3.17c
ISS
AthAt2g43810
At3g59810
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0034564
PfaPF13_0142
GO:0005688 U6 snRNP C
IDA
SceS000002786
ISS
SpoSPAC2F3.17c
NAS
DmeFBgn0034564
TAS
SceS000002786
GO:0005730 nucleolus C
IDA
SceS000002786
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000002786
ISS
AthAt3g59810
At2g43810
GO:0005737 cytoplasm C
ISO
MmuMGI:1925901
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0034564
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0003674 molecular_function F
ND
AthAt3g59810
At2g43810
GO:0003723 RNA binding F
IDA
SceS000002786
IPI
SceS000002786
GO:0046982 protein heterodimerization activity F
ISO
MmuMGI:1925901
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002786
ISS
DmeFBgn0034564
SpoSPAC2F3.17c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000002786
GO:0002119 nematode larval development P
IMP
CelWBGene00003080
GO:0006401 RNA catabolic process P
RCA
SceS000002786
GO:0006402 mRNA catabolic process P
ISO
MmuMGI:1925901
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003080
GO:0010171 body morphogenesis P
IMP
CelWBGene00003080
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0040002 collagen and cuticulin-based cuticle
development		 P
IMP
CelWBGene00003080
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003080
GO:0040011 locomotion P
IMP
CelWBGene00003080

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC2F3.17c
(Q9UUI1)		 YDR378C
(S000002786)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002786
GO:0005634 nucleus C
IDA
SpoSPAC2F3.17c
GO:0005688 U6 snRNP C
IDA
SceS000002786
ISS
SpoSPAC2F3.17c
TAS
SceS000002786
GO:0005730 nucleolus C
IDA
SceS000002786
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000002786
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0003723 RNA binding F
IDA
SceS000002786
IPI
SceS000002786
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002786
ISS
SpoSPAC2F3.17c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000002786
GO:0006401 RNA catabolic process P
RCA
SceS000002786
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000002786
ISS
SpoSPAC2F3.17c

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GO info in one table:

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