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Search term: YDR404C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPB7
SGD link S000002812
Alternative ID YDR404C
Description RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; involved recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of
Synonyms YDR404C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3298 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA-directed RNA polymerase subunit E'

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g22900 GI:18403570
Arabidopsis thaliana (Ath) At4g14520 GI:15233470
Arabidopsis thaliana (Ath) At4g14660 GI:15233533
Arabidopsis thaliana (Ath) At5g59180 GI:15237831
Caenorhabditis elegans (Cel) CE22465
(WBGene00021845)		 GI:17510349 Q9N3C9
Drosophila melanogaster (Dme) 7299973 GI:7299973
Homo sapiens (Hsa) Hs4505947
(POLR2G)		 GI:4505947 P62487
Saccharomyces cerevisiae (Sce) YDR404c
(S000002812)		 GI:6320612 P34087
Schizosaccharomyces pombe (Spo) SPACUNK4.06c GI:19114885 O14459
Encephalitozoon cuniculi (Ecu) ECU07g1750 GI:19074596 Q8SRG5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthAt3g22900
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002812
GO:0005634 nucleus C
IDA
HsaPOLR2G
SceS000002812
SpoSPACUNK4.06c
GO:0005654 nucleoplasm C
EXP
HsaPOLR2G
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2G
SceS000002812
IPI
AthAt5g59180
GO:0005737 cytoplasm C
IDA
SceS000002812
GO:0005829 cytosol C
IDA
SpoSPACUNK4.06c
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IC
SpoSPACUNK4.06c
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt4g14660
GO:0003697 single-stranded DNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003723 RNA binding F
ISS
SpoSPACUNK4.06c
GO:0003727 single-stranded RNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPACUNK4.06c
ISS
AthAt4g14660
At5g59180
At3g22900
GO:0004672 protein kinase activity F
IDA
HsaPOLR2G
GO:0005515 protein binding F
IPI
HsaPOLR2G
SpoSPACUNK4.06c
GO:0000003 reproduction P
IMP
CelWBGene00021845
GO:0000291 nuclear-transcribed mRNA catabolic process,
exonucleolytic		 P
IGI
SceS000002812
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00021845
GO:0002119 nematode larval development P
IMP
CelWBGene00021845
GO:0006350 transcription P
ISS
AthAt5g59180
At3g22900
At4g14660
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2G
IGI
SceS000002812
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2G
IDA
SceS000002812
TAS
SpoSPACUNK4.06c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2G
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00021845
GO:0007369 gastrulation P
IMP
CelWBGene00021845
GO:0008380 RNA splicing P
EXP
HsaPOLR2G
GO:0009790 embryo development P
IMP
CelWBGene00021845
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00021845
GO:0031123 RNA 3'-end processing P
IPI
SpoSPACUNK4.06c
GO:0040007 growth P
IMP
CelWBGene00021845
GO:0060213 positive regulation of nuclear-transcribed mRNA
poly(A) tail shortening		 P
IMP
SceS000002812

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2019

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR2G GI:4505947 P62487
Pan troglodytes (Ptr) POLR2G GI:114638047
Canis familiaris (Cfa) POLR2G GI:57099729
Mus musculus (Mmu) Polr2g
(MGI:1914960)		 GI:13385826 P62488
Rattus norvegicus (Rno) Polr2g
(RGD:621284)		 GI:16758826
Drosophila melanogaster (Dme) Rpb7
(FBgn0051155)		 GI:24647020
Anopheles gambiae (Aga) AgaP_AGAP002121 GI:58394731
Caenorhabditis elegans (Cel) rpb-7
(CE22465;
WBGene00021845)		 GI:17510349 Q9N3C9
Schizosaccharomyces pombe (Spo) SPAPYUK71.02 GI:19114885
Saccharomyces cerevisiae (Sce) RPB7
(S000002812)		 GI:6320612 P34087
Kluyveromyces lactis (Kla) KLLA0C06787g GI:50305083
Eremothecium gossypii (Ego) AGOS_AFR402C GI:45198920
Arabidopsis thaliana (Ath) NRPB7 GI:15237831
Oryza sativa (Osa) Os05g0400700 GI:115463767
Plasmodium falciparum (Pfa) PF10_0269 GI:124802663


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002812
GO:0005634 nucleus C
IDA
HsaPOLR2G
SceS000002812
GO:0005654 nucleoplasm C
EXP
HsaPOLR2G
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2G
SceS000002812
IPI
AthNRPB7
ISS
DmeFBgn0051155
PfaPF10_0269
GO:0005737 cytoplasm C
IDA
SceS000002812
GO:0003697 single-stranded DNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003727 single-stranded RNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003899 DNA-directed RNA polymerase activity F
ISS
AthNRPB7
DmeFBgn0051155
GO:0004672 protein kinase activity F
IDA
HsaPOLR2G
GO:0005515 protein binding F
IPI
HsaPOLR2G
GO:0000003 reproduction P
IMP
CelWBGene00021845
GO:0000291 nuclear-transcribed mRNA catabolic process,
exonucleolytic		 P
IGI
SceS000002812
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00021845
GO:0002119 nematode larval development P
IMP
CelWBGene00021845
GO:0006350 transcription P
ISS
AthNRPB7
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2G
IGI
SceS000002812
ISS
DmeFBgn0051155
PfaPF10_0269
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2G
IDA
SceS000002812
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2G
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00021845
GO:0007369 gastrulation P
IMP
CelWBGene00021845
GO:0008380 RNA splicing P
EXP
HsaPOLR2G
GO:0009790 embryo development P
IMP
CelWBGene00021845
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00021845
GO:0040007 growth P
IMP
CelWBGene00021845
GO:0060213 positive regulation of nuclear-transcribed mRNA
poly(A) tail shortening		 P
IMP
SceS000002812

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2272

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4244 ENSANGP00000017695
Ashbya gossypii (Ago) ago3594 AFR402C
Arabidopsis thaliana (Ath) ath27981 At5g59180.1
Caenorhabditis elegans (Cel) cel19719 Y54E10BR.6
(CE22465;
WBGene00021845)
Candida glabrata (Cgl) cgl1344 CAGL0F02673g
Cryptococcus neoformans (Cne) cne870 163.m06232
Dictyostelium discoideum (Ddi) ddi12928 DDB0216295
Debaryomyces hansenii (Dha) dha6067 DEHA0G08195g
Drosophila melanogaster (Dme) dme12690 CG31155-PA
(FBgn0051155)
Danio rerio (Dre) dre5309 ENSDARP00000010566
Danio rerio (Dre) dre5328 ENSDARP00000041901
Encephalitozoon cuniculi (Ecu) ecu1982 19074596
Takifugu rubripes (Fru) fru22013 SINFRUP00000147569
Homo sapiens (Hsa) hsa5809 ENSP00000301788
(POLR2G)		 P62487
Kluyveromyces lactis (Kla) kla1499 KLLA0C06787g
Mus musculus (Mmu) mmu13275 ENSMUSP00000003790
Neurospora crassa (Ncr) ncr2577 NCU02661.2
Oryza sativa (Osa) osa66265 6889.m00189
Plasmodium falciparum (Pfa) pfa487 PF10_0269
Rattus norvegicus (Rno) rno3646 ENSRNOP00000026313
(RGD:621284)		 P62489
Saccharomyces cerevisiae (Sce) sce1469 YDR404C
(S000002812)
Schizosaccharomyces pombe (Spo) spo413 SPACUNK4.06c O14459


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002812
GO:0005634 nucleus C
IDA
SceS000002812
SpoSPACUNK4.06c
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000002812
IPI
AthAt5g59180
ISS
DmeFBgn0051155
PfaPF10_0269
GO:0005737 cytoplasm C
IDA
SceS000002812
GO:0005829 cytosol C
IDA
SpoSPACUNK4.06c
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IC
SpoSPACUNK4.06c
GO:0003697 single-stranded DNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003723 RNA binding F
ISS
SpoSPACUNK4.06c
GO:0003727 single-stranded RNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPACUNK4.06c
ISS
AthAt5g59180
DmeFBgn0051155
GO:0005515 protein binding F
IPI
SpoSPACUNK4.06c
GO:0000003 reproduction P
IMP
CelWBGene00021845
GO:0000291 nuclear-transcribed mRNA catabolic process,
exonucleolytic		 P
IGI
SceS000002812
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00021845
GO:0002119 nematode larval development P
IMP
CelWBGene00021845
GO:0006350 transcription P
ISS
AthAt5g59180
GO:0006366 transcription from RNA polymerase II
promoter		 P
IGI
SceS000002812
ISS
DmeFBgn0051155
PfaPF10_0269
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IDA
SceS000002812
TAS
SpoSPACUNK4.06c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00021845
GO:0007369 gastrulation P
IMP
CelWBGene00021845
GO:0009790 embryo development P
IMP
CelWBGene00021845
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00021845
GO:0031123 RNA 3'-end processing P
IPI
SpoSPACUNK4.06c
GO:0040007 growth P
IMP
CelWBGene00021845
GO:0060213 positive regulation of nuclear-transcribed mRNA
poly(A) tail shortening		 P
IMP
SceS000002812

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPACUNK4.06c
(O14459)		 YDR404C
(S000002812)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000002812
GO:0005634 nucleus C
IDA
SceS000002812
SpoSPACUNK4.06c
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000002812
GO:0005737 cytoplasm C
IDA
SceS000002812
GO:0005829 cytosol C
IDA
SpoSPACUNK4.06c
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IC
SpoSPACUNK4.06c
GO:0003697 single-stranded DNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003723 RNA binding F
ISS
SpoSPACUNK4.06c
GO:0003727 single-stranded RNA binding F
IDA
SceS000002812
IMP
SceS000002812
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPACUNK4.06c
GO:0005515 protein binding F
IPI
SpoSPACUNK4.06c
GO:0000291 nuclear-transcribed mRNA catabolic process,
exonucleolytic		 P
IGI
SceS000002812
GO:0006366 transcription from RNA polymerase II
promoter		 P
IGI
SceS000002812
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IDA
SceS000002812
TAS
SpoSPACUNK4.06c
GO:0031123 RNA 3'-end processing P
IPI
SpoSPACUNK4.06c
GO:0060213 positive regulation of nuclear-transcribed mRNA
poly(A) tail shortening		 P
IMP
SceS000002812

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GO info in one table:

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