YOGY Home YOGY Help

Search term: YDR408C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ADE8
SGD link S000002816
Alternative ID YDR408C
Description Phosphoribosyl-glycinamide transformylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway
Synonyms YDR408C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3076 ACDHYP-

KOGs classification KOGs description
METABOLISM 5'-phosphoribosylglycinamide formyltransferase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g31220 GI:15221650
Arabidopsis thaliana (Ath) At4g17360 GI:15236046
Caenorhabditis elegans (Cel) CE28304_2 GI:17567511 Q20143
Drosophila melanogaster (Dme) 7297208_3 GI:17647139
Homo sapiens (Hsa) Hs4503915_2
(GART)		 GI:4503915 P22102
Saccharomyces cerevisiae (Sce) YDR408c
(S000002816)		 GI:6320616 P04161
Schizosaccharomyces pombe (Spo) SPCC24E4.01 GI:19076065


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002816
GO:0005737 cytoplasm C
IDA
SceS000002816
GO:0005739 mitochondrion C
IDA
AthAt4g17360
GO:0009507 chloroplast C
IDA
AthAt1g31220
GO:0004644 phosphoribosylglycinamide formyltransferase
activity		 F
IGI
AthAt1g31220
TAS
SceS000002816
GO:0005515 protein binding F
IPI
HsaGART
GO:0008864 formyltetrahydrofolate deformylase
activity		 F
ISS
AthAt4g17360
At1g31220
GO:0016742 hydroxymethyl-, formyl- and related transferase
activity		 F
ISS
AthAt4g17360
At1g31220
GO:0006164 purine nucleotide biosynthetic
process		 P
TAS
SceS000002816
GO:0006189 'de novo' IMP biosynthetic process P
TAS
SceS000002816
GO:0009058 biosynthetic process P
ISS
AthAt4g17360
At1g31220
GO:0009152 purine ribonucleotide biosynthetic
process		 P
IGI
AthAt1g31220
ISS
AthAt4g17360
At1g31220
GO:0009168 purine ribonucleoside monophosphate biosynthetic
process		 P
EXP
HsaGART
GO:0009853 photorespiration P
IMP
AthAt4g17360
GO:0046084 adenine biosynthetic process P
IMP
SceS000002816
GO:0046653 tetrahydrofolate metabolic process P
IMP
AthAt4g17360

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38817

Species Gene ID NCBI link UniProt link
Canis familiaris (Cfa) LOC609892 GI:74001409
Schizosaccharomyces pombe (Spo) ade5
(SPCC569.08c)		 GI:19076065 Q9UUK7
Saccharomyces cerevisiae (Sce) ADE8
(S000002816)		 GI:6320616 P04161
Kluyveromyces lactis (Kla) KLLA0A02211g GI:50302327
Eremothecium gossypii (Ego) AGOS_AAR120C GI:45184944
Magnaporthe grisea (Mgr) MGG_13813 GI:145603081
Neurospora crassa (Ncr) NCU00843.1 GI:32409085
Arabidopsis thaliana (Ath) AT1G31220 GI:15221650
Oryza sativa (Osa) Os05g0270800 GI:115462921
Oryza sativa (Osa) Os08g0500900 GI:115477130


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002816
ISS
SpoSPCC569.08c
GO:0005737 cytoplasm C
IDA
SceS000002816
ISS
SpoSPCC569.08c
GO:0009507 chloroplast C
IDA
AthAt1g31220
GO:0004644 phosphoribosylglycinamide formyltransferase
activity		 F
IGI
AthAt1g31220
ISS
SpoSPCC569.08c
TAS
SceS000002816
GO:0008864 formyltetrahydrofolate deformylase
activity		 F
ISS
AthAt1g31220
GO:0016742 hydroxymethyl-, formyl- and related transferase
activity		 F
ISS
AthAt1g31220
GO:0006164 purine nucleotide biosynthetic
process		 P
TAS
SceS000002816
GO:0006189 'de novo' IMP biosynthetic process P
ISS
SpoSPCC569.08c
TAS
SceS000002816
GO:0009058 biosynthetic process P
ISS
AthAt1g31220
GO:0009152 purine ribonucleotide biosynthetic
process		 P
IGI
AthAt1g31220
ISS
AthAt1g31220
GO:0032259 methylation P
ISS
SpoSPCC569.08c
GO:0046084 adenine biosynthetic process P
IMP
SceS000002816
ISS
SpoSPCC569.08c

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3327

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago307 AAR120C
Arabidopsis thaliana (Ath) ath3262 At1g31220.1
Candida glabrata (Cgl) cgl1348 CAGL0F02761g
Cryptococcus neoformans (Cne) cne5817 179.m00692
Dictyostelium discoideum (Ddi) ddi12864 DDB0230085
Debaryomyces hansenii (Dha) dha5985 DEHA0G06402g
Debaryomyces hansenii (Dha) dha5986 DEHA0G06413g
Escherichia coli (Eco) eco2421 16130425
Kluyveromyces lactis (Kla) kla95 KLLA0A02211g
Neurospora crassa (Ncr) ncr821 NCU00843.2
Oryza sativa (Osa) osa15908 3053.m00165
Oryza sativa (Osa) osa28988 4213.m00068
Saccharomyces cerevisiae (Sce) sce1474 YDR408C
(S000002816)
Schizosaccharomyces pombe (Spo) spo4841 SPCC569.08c Q9UUK7
Yarrowia lipolytica (Yli) yli2835 YALI0D03069g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002816
ISS
SpoSPCC569.08c
GO:0005737 cytoplasm C
IDA
SceS000002816
ISS
SpoSPCC569.08c
GO:0009507 chloroplast C
IDA
AthAt1g31220
GO:0004644 phosphoribosylglycinamide formyltransferase
activity		 F
IGI
AthAt1g31220
ISS
SpoSPCC569.08c
TAS
SceS000002816
GO:0008864 formyltetrahydrofolate deformylase
activity		 F
ISS
AthAt1g31220
GO:0016742 hydroxymethyl-, formyl- and related transferase
activity		 F
ISS
AthAt1g31220
GO:0006164 purine nucleotide biosynthetic
process		 P
TAS
SceS000002816
GO:0006189 'de novo' IMP biosynthetic process P
ISS
SpoSPCC569.08c
TAS
SceS000002816
GO:0009058 biosynthetic process P
ISS
AthAt1g31220
GO:0009152 purine ribonucleotide biosynthetic
process		 P
IGI
AthAt1g31220
ISS
AthAt1g31220
GO:0032259 methylation P
ISS
SpoSPCC569.08c
GO:0046084 adenine biosynthetic process P
IMP
SceS000002816
ISS
SpoSPCC569.08c

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC569.08c
(Q9UUK7)		 YDR408C
(S000002816)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002816
ISS
SpoSPCC569.08c
GO:0005737 cytoplasm C
IDA
SceS000002816
ISS
SpoSPCC569.08c
GO:0004644 phosphoribosylglycinamide formyltransferase
activity		 F
ISS
SpoSPCC569.08c
TAS
SceS000002816
GO:0006164 purine nucleotide biosynthetic
process		 P
TAS
SceS000002816
GO:0006189 'de novo' IMP biosynthetic process P
ISS
SpoSPCC569.08c
TAS
SceS000002816
GO:0032259 methylation P
ISS
SpoSPCC569.08c
GO:0046084 adenine biosynthetic process P
IMP
SceS000002816
ISS
SpoSPCC569.08c

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk