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Search term: YDR473C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP3
SGD link S000002881
Alternative ID YDR473C
Description Splicing factor, component of the U4/U6-U5 snRNP complex
Synonyms YDR473C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2769 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Putative u4/u6 small nuclear ribonucleoprotein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g28060 GI:15217815
Arabidopsis thaliana (Ath) At3g55930 GI:15228779
Arabidopsis thaliana (Ath) At3g56790 GI:15229008
Caenorhabditis elegans (Cel) CE03498
(WBGene00010844)
GI:17554268 Q21486
Drosophila melanogaster (Dme) 7293728 GI:7293728 Q9VW52
Homo sapiens (Hsa) Hs22049844_1 GI:22049844
Homo sapiens (Hsa) Hs4758556
(PRPF3)
GI:4758556 O43395
Saccharomyces cerevisiae (Sce) YDR473c
(S000002881)
GI:6320681 Q03338
Schizosaccharomyces pombe (Spo) SPAC29E6.02 GI:19115472 Q09856


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g56790
At1g28060
At3g55930
GO:0005634 nucleus C
IDA
SpoSPAC29E6.02
GO:0005681 spliceosomal complex C
NAS
HsaPRPF3
GO:0005816 spindle pole body C
IDA
SpoSPAC29E6.02
GO:0005819 spindle C
IDA
SpoSPAC29E6.02
GO:0015030 Cajal body C
IDA
HsaPRPF3
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002881
ISS
SpoSPAC29E6.02
GO:0003674 molecular_function F
ND
AthAt3g56790
At3g55930
At1g28060
SceS000002881
SpoSPAC29E6.02
GO:0005515 protein binding F
IPI
HsaPRPF3
GO:0000375 RNA splicing, via transesterification
reactions
P
TAS
HsaPRPF3
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002881
ISS
SpoSPAC29E6.02
NAS
HsaPRPF3
GO:0006397 mRNA processing P
TAS
HsaPRPF3
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010844
GO:0008150 biological_process P
ND
AthAt3g56790
At3g55930
At1g28060
GO:0008380 RNA splicing P
TAS
HsaPRPF3
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00010844
GO:0016071 mRNA metabolic process P
RCA
SceS000002881

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
74652

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) PRP3
(S000002881)
GI:6320681 Q03338
Kluyveromyces lactis (Kla) KLLA0E09251g GI:50308729
Eremothecium gossypii (Ego) AGOS_AEL234C GI:45190373


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002881
GO:0003674 molecular_function F
ND
SceS000002881
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002881
GO:0016071 mRNA metabolic process P
RCA
SceS000002881

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1942

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga14423 ENSANGP00000014537
Ashbya gossypii (Ago) ago2272 AEL234C
Arabidopsis thaliana (Ath) ath2937 At1g28060.1
Arabidopsis thaliana (Ath) ath16982 At3g55930.1
Caenorhabditis elegans (Cel) cel12890 M03C11.7
(CE03498;
WBGene00010844)
Candida glabrata (Cgl) cgl5046 CAGL0M08976g
Cryptococcus neoformans (Cne) cne5803 179.m00677
Dictyostelium discoideum (Ddi) ddi2211 DDB0167575
Debaryomyces hansenii (Dha) dha5976 DEHA0G06204g
Drosophila melanogaster (Dme) dme10299 CG7757-PA
(FBgn0036915)
Drosophila melanogaster (Dme) dme10300 CG7757-PB
(FBgn0036915)
Danio rerio (Dre) dre6826 ENSDARP00000025313
Danio rerio (Dre) dre6815 ENSDARP00000037629
Takifugu rubripes (Fru) fru12913 SINFRUP00000139891
Gallus gallus (Gga) gga24650 ENSGALP00000000633
(RCJMB04_20b24)
Homo sapiens (Hsa) hsa1942 ENSP00000236015
Homo sapiens (Hsa) hsa30378 ENSP00000315379
(PRPF3)
O43395-1
Kluyveromyces lactis (Kla) kla3367 KLLA0E09251g
Mus musculus (Mmu) mmu17160 ENSMUSP00000015892
(MGI:1918017)
Q922U1
Neurospora crassa (Ncr) ncr1591 NCU01637.2
Oryza sativa (Osa) osa48188 5660.m00127
Oryza sativa (Osa) osa45558 5685.m00155
Plasmodium falciparum (Pfa) pfa4184 MAL13P1.45
Rattus norvegicus (Rno) rno16620 ENSRNOP00000037116
(RGD:1310555)
Saccharomyces cerevisiae (Sce) sce1540 YDR473C
(S000002881)
Schizosaccharomyces pombe (Spo) spo688 SPAC29E6.02 Q09856
Yarrowia lipolytica (Yli) yli970 YALI0B05632g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g28060
At3g55930
GO:0005634 nucleus C
IDA
SpoSPAC29E6.02
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0036915
GO:0005687 U4 snRNP C
ISS
DmeFBgn0036915
GO:0005688 U6 snRNP C
ISS
DmeFBgn0036915
GO:0005816 spindle pole body C
IDA
SpoSPAC29E6.02
GO:0005819 spindle C
IDA
SpoSPAC29E6.02
GO:0030532 small nuclear ribonucleoprotein
complex
C
ISS
DmeFBgn0036915
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002881
ISS
SpoSPAC29E6.02
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036915
GO:0003674 molecular_function F
ND
AthAt3g55930
At1g28060
SceS000002881
SpoSPAC29E6.02
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036915
IPI
SceS000002881
ISS
DmeFBgn0036915
SpoSPAC29E6.02
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010844
GO:0008150 biological_process P
ND
AthAt3g55930
At1g28060
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00010844
GO:0016071 mRNA metabolic process P
RCA
SceS000002881

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC29E6.02
(Q09856)
YDR473C
(S000002881)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC29E6.02
GO:0005816 spindle pole body C
IDA
SpoSPAC29E6.02
GO:0005819 spindle C
IDA
SpoSPAC29E6.02
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000002881
ISS
SpoSPAC29E6.02
GO:0003674 molecular_function F
ND
SceS000002881
SpoSPAC29E6.02
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000002881
ISS
SpoSPAC29E6.02
GO:0016071 mRNA metabolic process P
RCA
SceS000002881

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GO info in one table:

s.khadayate@ucl.ac.uk