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Search term: YDR482C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CWC21
SGD link S000002890
Alternative ID YDR482C
Description Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; may bind RNA; has similarity to S. pombe Cwf21p
Synonyms YDR482C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1869 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Splicing coactivator SRm160/300, subunit SRm300

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g49600_1 GI:11358453
Caenorhabditis elegans (Cel) CE25503
(WBGene00013260)		 GI:17537603 Q9U213
Drosophila melanogaster (Dme) 7292130 GI:7292130
Homo sapiens (Hsa) Hs19923466 GI:19923466
Homo sapiens (Hsa) Hs22049504 GI:22049504
Saccharomyces cerevisiae (Sce) YDR482c
(S000002890)		 GI:6320690 Q03375
Schizosaccharomyces pombe (Spo) SPAC4A8.09c GI:19114732 O14161


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC4A8.09c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC4A8.09c
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000002890
GO:0005730 nucleolus C
IDA
AthAt3g49600
GO:0005816 spindle pole body C
IDA
SpoSPAC4A8.09c
GO:0003674 molecular_function F
ND
SceS000002890
SpoSPAC4A8.09c
GO:0004843 ubiquitin-specific protease activity F
ISS
AthAt3g49600
GO:0000003 reproduction P
IMP
CelWBGene00013260
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000002890
IMP
SceS000002890
TAS
SpoSPAC4A8.09c
GO:0002119 nematode larval development P
IMP
CelWBGene00013260
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00013260
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013260
GO:0040007 growth P
IMP
CelWBGene00013260
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00013260
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00013260
GO:0048316 seed development P
IMP
AthAt3g49600

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38847

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) CWC21
(S000002890)		 GI:6320690 Q03375
Eremothecium gossypii (Ego) AGOS_AGL263W GI:45200834


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000002890
GO:0003674 molecular_function F
ND
SceS000002890
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000002890
IMP
SceS000002890

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1642

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga1489 ENSANGP00000012452
Ashbya gossypii (Ago) ago4049 AGL263W
Caenorhabditis elegans (Cel) cel19969 Y57A10A.19
(CE25503;
WBGene00013260)
Candida glabrata (Cgl) cgl2385 CAGL0H07381g
Cryptococcus neoformans (Cne) cne4356 177.m03109
Cryptococcus neoformans (Cne) cne5439 179.m00291
Dictyostelium discoideum (Ddi) ddi10583 DDB0219673
Debaryomyces hansenii (Dha) dha1234 DEHA0B12804g
Drosophila melanogaster (Dme) dme7469 CG7971-PA
(FBgn0035253)
Drosophila melanogaster (Dme) dme7468 CG7971-PB
(FBgn0035253)
Drosophila melanogaster (Dme) dme7467 CG7971-PC
(FBgn0035253)
Danio rerio (Dre) dre17535 ENSDARP00000018468
Danio rerio (Dre) dre17537 ENSDARP00000019847
Danio rerio (Dre) dre17536 ENSDARP00000038251
Takifugu rubripes (Fru) fru22598 SINFRUP00000132104
Takifugu rubripes (Fru) fru22599 SINFRUP00000132105
Takifugu rubripes (Fru) fru22600 SINFRUP00000132106
Takifugu rubripes (Fru) fru22597 SINFRUP00000175565
Homo sapiens (Hsa) hsa11522 ENSP00000301740
(SRRM2)		 Q9UQ35-1
Kluyveromyces lactis (Kla) kla974 KLLA0B10054g
Mus musculus (Mmu) mmu11040 ENSMUSP00000073018
(MGI:1923206)		 Q05BN4
Neurospora crassa (Ncr) ncr6316 NCU06498.2
Oryza sativa (Osa) osa4240 2220.m00148
Oryza sativa (Osa) osa45180 5381.m00217
Plasmodium falciparum (Pfa) pfa1162 PF14_0482
Rattus norvegicus (Rno) rno4564 ENSRNOP00000006370
(RGD:1310163)		 B2GUY6
Saccharomyces cerevisiae (Sce) sce1548 YDR482C
(S000002890)
Schizosaccharomyces pombe (Spo) spo2830 SPAC4A8.09c O14161
Yarrowia lipolytica (Yli) yli6323 YALI0F23309g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1923206
PfaPF14_0482
GO:0005634 nucleus C
IDA
SpoSPAC4A8.09c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC4A8.09c
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000002890
GO:0005816 spindle pole body C
IDA
SpoSPAC4A8.09c
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0035253
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0035253
GO:0003674 molecular_function F
ND
MmuMGI:1923206
PfaPF14_0482
SceS000002890
SpoSPAC4A8.09c
GO:0000003 reproduction P
IMP
CelWBGene00013260
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0035253
IGI
SceS000002890
IMP
SceS000002890
TAS
SpoSPAC4A8.09c
GO:0002119 nematode larval development P
IMP
CelWBGene00013260
GO:0008150 biological_process P
ND
MmuMGI:1923206
PfaPF14_0482
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00013260
GO:0008380 RNA splicing P
ISS
DmeFBgn0035253
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013260
GO:0040007 growth P
IMP
CelWBGene00013260
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00013260
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00013260

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4A8.09c
(O14161)		 YDR482C
(S000002890)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC4A8.09c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC4A8.09c
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000002890
GO:0005816 spindle pole body C
IDA
SpoSPAC4A8.09c
GO:0003674 molecular_function F
ND
SceS000002890
SpoSPAC4A8.09c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000002890
IMP
SceS000002890
TAS
SpoSPAC4A8.09c

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GO info in one table:

s.khadayate@ucl.ac.uk