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Search term: YDR515W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SLF1
SGD link S000002923
Alternative ID YDR515W
Description RNA binding protein that associates with polysomes; proposed to be involved in regulating mRNA translation; involved in the copper-dependent mineralization of copper sulfide complexes on cell surface in cells cultured in copper salts
Synonyms YDR515W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2590 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALINGINFORMATION STORAGE AND PROCESSING RNA-binding protein LARP/SRO9 and related La domain proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g35890 GI:7486390
Arabidopsis thaliana (Ath) At5g21160 GI:15242173
Arabidopsis thaliana (Ath) At5g66100 GI:15239264
Caenorhabditis elegans (Cel) CE28950 GI:17554676
Drosophila melanogaster (Dme) 7301667 GI:7301667
Homo sapiens (Hsa) Hs14149950 GI:14149950
Homo sapiens (Hsa) Hs22041373 GI:22041373
Homo sapiens (Hsa) Hs22049862 GI:22049862
Homo sapiens (Hsa) Hs8922390 GI:8922390
Saccharomyces cerevisiae (Sce) YCL037c
(S000000542)		 GI:6319812
Saccharomyces cerevisiae (Sce) YDR515w
(S000002923)		 GI:6320723 Q12034
Schizosaccharomyces pombe (Spo) SPAC1527.03 GI:19115466 Q9P6K0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt5g21160
GO:0005737 cytoplasm C
IDA
SceS000002923
ISS
SpoSPAC1527.03
GO:0005829 cytosol C
IDA
AthAt5g21160
SpoSPAC1527.03
GO:0005844 polysome C
IDA
SceS000000542
S000002923
ISS
SpoSPAC1527.03
GO:0003674 molecular_function F
ND
AthAt5g21160
At5g66100
GO:0003723 RNA binding F
IDA
SceS000000542
S000002923
ISS
SpoSPAC1527.03
GO:0006412 translation P
IPI
SceS000000542
ISS
SpoSPAC1527.03
GO:0006417 regulation of translation P
IGI
SceS000002923
IMP
SceS000002923
IPI
SceS000002923
RCA
SceS000000542
GO:0006878 cellular copper ion homeostasis P
IMP
SceS000002923
IPI
SceS000002923
GO:0008150 biological_process P
ND
AthAt5g66100
At5g21160

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117748

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SRO9
(S000000542)		 GI:37362625
Saccharomyces cerevisiae (Sce) SLF1
(S000002923)		 GI:6320723 Q12034


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000002923
GO:0005844 polysome C
IDA
SceS000000542
S000002923
GO:0003723 RNA binding F
IDA
SceS000000542
S000002923
GO:0006412 translation P
IPI
SceS000000542
GO:0006417 regulation of translation P
IGI
SceS000002923
IMP
SceS000002923
IPI
SceS000002923
RCA
SceS000000542
GO:0006878 cellular copper ion homeostasis P
IMP
SceS000002923
IPI
SceS000002923

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1807

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga696 ENSANGP00000019588
Ashbya gossypii (Ago) ago370 AAR182C
Ashbya gossypii (Ago) ago3906 AFR713W
Arabidopsis thaliana (Ath) ath24406 At5g21160.1
Caenorhabditis elegans (Cel) cel14038 R144.7
Dictyostelium discoideum (Ddi) ddi2523 DDB0217890
Drosophila melanogaster (Dme) dme14864 CG14066-PA
(FBgn0040108)
Drosophila melanogaster (Dme) dme14862 CG14066-PB
(FBgn0040108)
Drosophila melanogaster (Dme) dme14863 CG14066-PC
(FBgn0040108)
Danio rerio (Dre) dre8364 ENSDARP00000005003
(larp1)		 Q6PHL0
Danio rerio (Dre) dre25993 ENSDARP00000008632
Danio rerio (Dre) dre8365 ENSDARP00000028343
Takifugu rubripes (Fru) fru31562 SINFRUP00000134843
Takifugu rubripes (Fru) fru27980 SINFRUP00000147304
Takifugu rubripes (Fru) fru27982 SINFRUP00000147306
Gallus gallus (Gga) gga5865 ENSGALP00000006364
(LARP1)
Gallus gallus (Gga) gga17429 ENSGALP00000016576
Homo sapiens (Hsa) hsa24634 ENSP00000264584
(LARP1B)		 Q659C4-2
Homo sapiens (Hsa) hsa26048 ENSP00000285894
(LARP1)		 Q6PKG0-2
Homo sapiens (Hsa) hsa24635 ENSP00000321997
(LARP1B)		 Q659C4-1
Homo sapiens (Hsa) hsa26047 ENSP00000336721
(LARP1)		 Q6PKG0-3
Homo sapiens (Hsa) hsa24636 ENSP00000352190
Kluyveromyces lactis (Kla) kla551 KLLA0B00517g
Kluyveromyces lactis (Kla) kla1248 KLLA0C01210g
Mus musculus (Mmu) mmu3710 ENSMUSP00000039321
Mus musculus (Mmu) mmu3709 ENSMUSP00000071421
(MGI:1890165)		 Q6ZQ58-1
Neurospora crassa (Ncr) ncr2633 NCU02720.2
Oryza sativa (Osa) osa9176 2729.m00138
Rattus norvegicus (Rno) rno5027 ENSRNOP00000003536
Rattus norvegicus (Rno) rno5028 ENSRNOP00000034373
Rattus norvegicus (Rno) rno5029 ENSRNOP00000037598
(RGD:1306683)
Rattus norvegicus (Rno) rno15997 ENSRNOP00000042509
Rattus norvegicus (Rno) rno15995 ENSRNOP00000043290
(RGD:1565989)
Rattus norvegicus (Rno) rno15998 ENSRNOP00000047454
Saccharomyces cerevisiae (Sce) sce1582 YDR515W
(S000002923)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt5g21160
GO:0005737 cytoplasm C
IDA
SceS000002923
ISA
MmuMGI:1890165
GO:0005829 cytosol C
IDA
AthAt5g21160
GO:0005844 polysome C
IDA
SceS000002923
GO:0003674 molecular_function F
ND
AthAt5g21160
MmuMGI:1890165
GO:0003723 RNA binding F
IDA
SceS000002923
GO:0006417 regulation of translation P
IGI
SceS000002923
IMP
SceS000002923
IPI
SceS000002923
GO:0006878 cellular copper ion homeostasis P
IMP
SceS000002923
IPI
SceS000002923
GO:0008150 biological_process P
ND
AthAt5g21160
MmuMGI:1890165

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1527.03
(Q9P6K0)		 YDR515W
(S000002923)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000002923
ISS
SpoSPAC1527.03
GO:0005829 cytosol C
IDA
SpoSPAC1527.03
GO:0005844 polysome C
IDA
SceS000002923
ISS
SpoSPAC1527.03
GO:0003723 RNA binding F
IDA
SceS000002923
ISS
SpoSPAC1527.03
GO:0006412 translation P
ISS
SpoSPAC1527.03
GO:0006417 regulation of translation P
IGI
SceS000002923
IMP
SceS000002923
IPI
SceS000002923
GO:0006878 cellular copper ion homeostasis P
IMP
SceS000002923
IPI
SceS000002923

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GO info in one table:

s.khadayate@ucl.ac.uk