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Search term: YEL037C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RAD23
SGD link S000000763
Alternative ID YEL037C
Description Protein with ubiquitin-like N terminus, subunit of Nuclear Excision Repair Factor 2 (NEF2) with Rad4p that recognizes and binds damaged DNA; enhances protein deglycosylation activity of Png1p; homolog of human HR23A and HR23B
Synonyms YEL037C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0011 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Nucleotide excision repair factor NEF2, RAD23 component

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g16190 GI:15221013
Arabidopsis thaliana (Ath) At1g79650 GI:7715605
Arabidopsis thaliana (Ath) At3g02540 GI:15232924
Arabidopsis thaliana (Ath) At5g16090 GI:15237268
Arabidopsis thaliana (Ath) At5g38470 GI:15240922
Caenorhabditis elegans (Cel) CE06606
(WBGene00013924)		 GI:17537797
Drosophila melanogaster (Dme) 7301100 GI:7301100
Drosophila melanogaster (Dme) 7304320 GI:4928456
Homo sapiens (Hsa) Hs20533600 GI:20533600
Homo sapiens (Hsa) Hs20542466 GI:20542466
Homo sapiens (Hsa) Hs4506387
(RAD23B)		 GI:4506387 P54727
Homo sapiens (Hsa) Hs4826964
(RAD23A)		 GI:4826964 P54725
Saccharomyces cerevisiae (Sce) YEL037c
(S000000763)		 GI:6320798 P32628
Saccharomyces cerevisiae (Sce) YOL111c
(S000005471)		 GI:6324461 Q12285
Schizosaccharomyces pombe (Spo) SPBC2D10.12 GI:19113023 O74803
Arabidopsis thaliana (Ath) At1g16190 GI:15221013
Arabidopsis thaliana (Ath) At1g79650 GI:7715605
Arabidopsis thaliana (Ath) At3g02540 GI:15232924
Arabidopsis thaliana (Ath) At5g16090 GI:15237268
Arabidopsis thaliana (Ath) At5g38470 GI:15240922
Caenorhabditis elegans (Cel) CE06606
(WBGene00013924)		 GI:17537797
Drosophila melanogaster (Dme) 7301100 GI:7301100
Drosophila melanogaster (Dme) 7304320 GI:4928456
Homo sapiens (Hsa) Hs20533600 GI:20533600
Homo sapiens (Hsa) Hs20542466 GI:20542466
Homo sapiens (Hsa) Hs4506387
(RAD23B)		 GI:4506387 P54727
Homo sapiens (Hsa) Hs4826964
(RAD23A)		 GI:4826964 P54725
Saccharomyces cerevisiae (Sce) YEL037c
(S000000763)		 GI:6320798 P32628
Saccharomyces cerevisiae (Sce) YOL111c
(S000005471)		 GI:6324461 Q12285
Schizosaccharomyces pombe (Spo) SPBC2D10.12 GI:19113023 O74803
Arabidopsis thaliana (Ath) At1g16190 GI:15221013
Arabidopsis thaliana (Ath) At1g79650 GI:7715605
Arabidopsis thaliana (Ath) At3g02540 GI:15232924
Arabidopsis thaliana (Ath) At5g16090 GI:15237268
Arabidopsis thaliana (Ath) At5g38470 GI:15240922
Caenorhabditis elegans (Cel) CE06606
(WBGene00013924)		 GI:17537797
Drosophila melanogaster (Dme) 7301100 GI:7301100
Drosophila melanogaster (Dme) 7304320 GI:4928456
Homo sapiens (Hsa) Hs20533600 GI:20533600
Homo sapiens (Hsa) Hs20542466 GI:20542466
Homo sapiens (Hsa) Hs4506387
(RAD23B)		 GI:4506387 P54727
Homo sapiens (Hsa) Hs4826964
(RAD23A)		 GI:4826964 P54725
Saccharomyces cerevisiae (Sce) YEL037c
(S000000763)		 GI:6320798 P32628
Saccharomyces cerevisiae (Sce) YOL111c
(S000005471)		 GI:6324461 Q12285
Schizosaccharomyces pombe (Spo) SPBC2D10.12 GI:19113023 O74803


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000763
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000763
GO:0000502 proteasome complex C
IMP
SceS000000763
IPI
SceS000000763
GO:0005634 nucleus C
IDA
AthAt3g02540
At5g38470
At1g79650
At1g16190
SceS000005471
SpoSPBC2D10.12
GO:0005635 nuclear envelope C
IDA
SpoSPBC2D10.12
GO:0005654 nucleoplasm C
EXP
HsaRAD23B
GO:0005737 cytoplasm C
IDA
SceS000005471
GO:0005739 mitochondrion C
IDA
SceS000000763
GO:0005829 cytosol C
IDA
SpoSPBC2D10.12
GO:0005840 ribosome C
IDA
SceS000005471
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase activity		 F
IDA
SceS000000763
GO:0003674 molecular_function F
ND
SceS000005471
GO:0003684 damaged DNA binding F
IDA
SceS000000763
ISS
AthAt5g38470
At1g79650
At1g16190
SpoSPBC2D10.12
GO:0003697 single-stranded DNA binding F
TAS
HsaRAD23B
RAD23A
GO:0005515 protein binding F
IPI
HsaRAD23A
RAD23B
GO:0030674 protein binding, bridging F
IPI
SceS000000763
GO:0031386 protein tag F
RCA
SceS000000763
GO:0031593 polyubiquitin binding F
TAS
SpoSPBC2D10.12
GO:0043130 ubiquitin binding F
IDA
AthAt5g38470
At3g02540
At1g79650
At1g16190
SceS000000763
SpoSPBC2D10.12
GO:0070628 proteasome binding F
IDA
AthAt1g16190
At3g02540
At5g38470
At1g79650
GO:0000003 reproduction P
IMP
CelWBGene00013924
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
HsaRAD23B
TAS
SceS000000763
GO:0000718 nucleotide-excision repair, DNA damage
removal		 P
EXP
HsaRAD23B
GO:0000753 cell morphogenesis involved in conjugation with
cellular fusion		 P
IMP
SceS000005471
GO:0006284 base-excision repair P
ISS
AthAt1g16190
At1g79650
GO:0006289 nucleotide-excision repair P
IDA
HsaRAD23B
IMP
SpoSPBC2D10.12
ISS
AthAt5g38470
GO:0006508 proteolysis P
RCA
SceS000000763
GO:0006517 protein deglycosylation P
IDA
SceS000000763
GO:0007346 regulation of mitotic cell cycle P
TAS
SpoSPBC2D10.12
GO:0009409 response to cold P
IEP
AthAt5g38470
GO:0016567 protein ubiquitination P
IMP
SpoSPBC2D10.12
GO:0030433 ER-associated protein catabolic
process		 P
IMP
SceS000000763
ISS
SpoSPBC2D10.12
GO:0042177 negative regulation of protein catabolic
process		 P
IMP
SpoSPBC2D10.12
TAS
SceS000000763
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
TAS
SpoSPBC2D10.12
GO:0045048 protein insertion into ER membrane P
IGI
SceS000005471

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
37704

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RAD23B GI:4506387 P54727
Pan troglodytes (Ptr) RAD23B GI:114626029
Canis familiaris (Cfa) RAD23B GI:57094213
Mus musculus (Mmu) Rad23b
(MGI:105128)		 GI:6679607 P54728
Rattus norvegicus (Rno) Rad23b
(RGD:1562958)		 GI:70778952
Gallus gallus (Gga) RAD23B GI:118104328
Anopheles gambiae (Aga) AgaP_AGAP000733 GI:158289573
Schizosaccharomyces pombe (Spo) rhp23
(SPBC2D10.12)		 GI:19113023 O74803
Saccharomyces cerevisiae (Sce) RAD23
(S000000763)		 GI:6320798 P32628
Kluyveromyces lactis (Kla) KLLA0E22220g GI:50309879
Eremothecium gossypii (Ego) AGOS_AFR358W GI:45198876
Magnaporthe grisea (Mgr) MGG_01656 GI:145613425
Neurospora crassa (Ncr) NCU07542.1 GI:32414697
Arabidopsis thaliana (Ath) RAD23-3 GI:15232924
Arabidopsis thaliana (Ath) AT5G38470 GI:15240922
Oryza sativa (Osa) Os06g0264300 GI:115467470


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000763
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000763
GO:0000502 proteasome complex C
IMP
SceS000000763
IPI
SceS000000763
GO:0005634 nucleus C
IDA
AthAt5g38470
SpoSPBC2D10.12
GO:0005635 nuclear envelope C
IDA
SpoSPBC2D10.12
GO:0005654 nucleoplasm C
EXP
HsaRAD23B
GO:0005739 mitochondrion C
IDA
SceS000000763
GO:0005829 cytosol C
IDA
SpoSPBC2D10.12
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase activity		 F
IDA
SceS000000763
GO:0003684 damaged DNA binding F
IDA
SceS000000763
ISS
AthAt5g38470
SpoSPBC2D10.12
GO:0003697 single-stranded DNA binding F
TAS
HsaRAD23B
GO:0005515 protein binding F
IPI
HsaRAD23B
GO:0030674 protein binding, bridging F
IPI
SceS000000763
GO:0031386 protein tag F
RCA
SceS000000763
GO:0031593 polyubiquitin binding F
TAS
SpoSPBC2D10.12
GO:0043130 ubiquitin binding F
IDA
AthAt5g38470
SceS000000763
SpoSPBC2D10.12
GO:0070628 proteasome binding F
IDA
AthAt5g38470
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
HsaRAD23B
TAS
SceS000000763
GO:0000718 nucleotide-excision repair, DNA damage
removal		 P
EXP
HsaRAD23B
GO:0006289 nucleotide-excision repair P
IDA
HsaRAD23B
IMP
SpoSPBC2D10.12
ISS
AthAt5g38470
GO:0006508 proteolysis P
RCA
SceS000000763
GO:0006517 protein deglycosylation P
IDA
SceS000000763
GO:0006974 response to DNA damage stimulus P
IDA
MmuMGI:105128
GO:0007283 spermatogenesis P
IMP
MmuMGI:105128
GO:0007346 regulation of mitotic cell cycle P
TAS
SpoSPBC2D10.12
GO:0009409 response to cold P
IEP
AthAt5g38470
GO:0016567 protein ubiquitination P
IMP
SpoSPBC2D10.12
GO:0030433 ER-associated protein catabolic
process		 P
IMP
SceS000000763
ISS
SpoSPBC2D10.12
GO:0042177 negative regulation of protein catabolic
process		 P
IMP
SpoSPBC2D10.12
TAS
SceS000000763
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
TAS
SpoSPBC2D10.12

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_585

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga15389 ENSANGP00000017457
Ashbya gossypii (Ago) ago3550 AFR358W
Arabidopsis thaliana (Ath) ath1729 At1g16190.1
Arabidopsis thaliana (Ath) ath7333 At1g79650.1
Arabidopsis thaliana (Ath) ath7334 At1g79650.2
Arabidopsis thaliana (Ath) ath7335 At1g79650.3
Arabidopsis thaliana (Ath) ath12270 At3g02540.1
Arabidopsis thaliana (Ath) ath12271 At3g02540.2
Arabidopsis thaliana (Ath) ath25611 At5g38470.1
Caenorhabditis elegans (Cel) cel21744 ZK20.3
(CE06606;
WBGene00013924)
Candida glabrata (Cgl) cgl4134 CAGL0L01309g
Cryptococcus neoformans (Cne) cne2454 181.m08491
Dictyostelium discoideum (Ddi) ddi12964 DDB0191177
Debaryomyces hansenii (Dha) dha866 DEHA0B04092g
Drosophila melanogaster (Dme) dme14143 CG10694-PA
(FBgn0039147)
Drosophila melanogaster (Dme) dme15525 CG1836-PA
(FBgn0026777)
Drosophila melanogaster (Dme) dme15524 CG1836-PB
(FBgn0026777)
Danio rerio (Dre) dre10385 ENSDARP00000010617
Danio rerio (Dre) dre31633 ENSDARP00000035723
(rad23b)		 Q6PHE9
Danio rerio (Dre) dre10384 ENSDARP00000041264
Danio rerio (Dre) dre10386 ENSDARP00000044344
Takifugu rubripes (Fru) fru24313 SINFRUP00000132055
Takifugu rubripes (Fru) fru6879 SINFRUP00000132801
Takifugu rubripes (Fru) fru6880 SINFRUP00000132802
Gallus gallus (Gga) gga27964 ENSGALP00000025004
Gallus gallus (Gga) gga27965 ENSGALP00000025005
(RAD23B)
Gallus gallus (Gga) gga27966 ENSGALP00000025006
Homo sapiens (Hsa) hsa31686 ENSP00000262560
Homo sapiens (Hsa) hsa15735 ENSP00000321365
(RAD23A)		 P54725
Homo sapiens (Hsa) hsa31687 ENSP00000350708
(RAD23B)		 P54727
Kluyveromyces lactis (Kla) kla3952 KLLA0E22220g
Mus musculus (Mmu) mmu26326 ENSMUSP00000003911
(MGI:105126)		 B7ZNQ1
Mus musculus (Mmu) mmu18165 ENSMUSP00000030134
(MGI:105128)		 Q3TJ52
Neurospora crassa (Ncr) ncr7343 NCU07542.2
Oryza sativa (Osa) osa8348 2543.m00060
Oryza sativa (Osa) osa28015 4222.m00133
Oryza sativa (Osa) osa30549 4322.m00215
Oryza sativa (Osa) osa30554 4322.m00253
Oryza sativa (Osa) osa37383 4981.m00144
Oryza sativa (Osa) osa52884 5946.m00117
Oryza sativa (Osa) osa53234 5956.m00246
Oryza sativa (Osa) osa53272 5956.m00313
Oryza sativa (Osa) osa69675 7084.m00095
Plasmodium falciparum (Pfa) pfa335 PF10_0114
Rattus norvegicus (Rno) rno23168 ENSRNOP00000021629
(RGD:1562958)		 Q4KMA2
Rattus norvegicus (Rno) rno14750 ENSRNOP00000038355
(RGD:1309899)
Saccharomyces cerevisiae (Sce) sce1663 YEL037C
(S000000763)
Schizosaccharomyces pombe (Spo) spo236 SPBC2D10.12 O74803
Yarrowia lipolytica (Yli) yli3386 YALI0D16401g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000763
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000763
GO:0000502 proteasome complex C
IMP
SceS000000763
IPI
SceS000000763
GO:0005634 nucleus C
IDA
AthAt3g02540
At5g38470
At1g79650
At1g16190
SpoSPBC2D10.12
GO:0005635 nuclear envelope C
IDA
SpoSPBC2D10.12
GO:0005739 mitochondrion C
IDA
SceS000000763
GO:0005829 cytosol C
IDA
SpoSPBC2D10.12
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase activity		 F
IDA
SceS000000763
GO:0003684 damaged DNA binding F
IDA
SceS000000763
ISS
AthAt5g38470
At1g79650
At1g16190
DmeFBgn0026777
FBgn0039147
PfaPF10_0114
SpoSPBC2D10.12
GO:0030674 protein binding, bridging F
IPI
SceS000000763
GO:0031386 protein tag F
RCA
SceS000000763
GO:0031593 polyubiquitin binding F
TAS
SpoSPBC2D10.12
GO:0043130 ubiquitin binding F
IDA
AthAt5g38470
At3g02540
At1g79650
At1g16190
SceS000000763
SpoSPBC2D10.12
GO:0070628 proteasome binding F
IDA
AthAt1g16190
At3g02540
At5g38470
At1g79650
GO:0000003 reproduction P
IMP
CelWBGene00013924
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
TAS
SceS000000763
GO:0006284 base-excision repair P
ISS
AthAt1g16190
At1g79650
DmeFBgn0039147
GO:0006289 nucleotide-excision repair P
IMP
SpoSPBC2D10.12
ISS
AthAt5g38470
DmeFBgn0026777
NAS
DmeFBgn0026777
GO:0006508 proteolysis P
RCA
SceS000000763
GO:0006517 protein deglycosylation P
IDA
SceS000000763
GO:0006974 response to DNA damage stimulus P
IDA
MmuMGI:105128
IGI
MmuMGI:105126
GO:0007283 spermatogenesis P
IMP
MmuMGI:105128
GO:0007346 regulation of mitotic cell cycle P
TAS
SpoSPBC2D10.12
GO:0009409 response to cold P
IEP
AthAt5g38470
GO:0016567 protein ubiquitination P
IMP
SpoSPBC2D10.12
GO:0030433 ER-associated protein catabolic
process		 P
IMP
SceS000000763
ISS
SpoSPBC2D10.12
GO:0042177 negative regulation of protein catabolic
process		 P
IMP
SpoSPBC2D10.12
TAS
SceS000000763
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
TAS
SpoSPBC2D10.12

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC2D10.12
(O74803)		 YEL037C
(S000000763)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000763
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000763
GO:0000502 proteasome complex C
IMP
SceS000000763
IPI
SceS000000763
GO:0005634 nucleus C
IDA
SpoSPBC2D10.12
GO:0005635 nuclear envelope C
IDA
SpoSPBC2D10.12
GO:0005739 mitochondrion C
IDA
SceS000000763
GO:0005829 cytosol C
IDA
SpoSPBC2D10.12
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase activity		 F
IDA
SceS000000763
GO:0003684 damaged DNA binding F
IDA
SceS000000763
ISS
SpoSPBC2D10.12
GO:0030674 protein binding, bridging F
IPI
SceS000000763
GO:0031386 protein tag F
RCA
SceS000000763
GO:0031593 polyubiquitin binding F
TAS
SpoSPBC2D10.12
GO:0043130 ubiquitin binding F
IDA
SceS000000763
SpoSPBC2D10.12
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
TAS
SceS000000763
GO:0006289 nucleotide-excision repair P
IMP
SpoSPBC2D10.12
GO:0006508 proteolysis P
RCA
SceS000000763
GO:0006517 protein deglycosylation P
IDA
SceS000000763
GO:0007346 regulation of mitotic cell cycle P
TAS
SpoSPBC2D10.12
GO:0016567 protein ubiquitination P
IMP
SpoSPBC2D10.12
GO:0030433 ER-associated protein catabolic
process		 P
IMP
SceS000000763
ISS
SpoSPBC2D10.12
GO:0042177 negative regulation of protein catabolic
process		 P
IMP
SpoSPBC2D10.12
TAS
SceS000000763
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
TAS
SpoSPBC2D10.12

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Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

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