YOGY Home YOGY Help

Search term: YER029C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SMB1
SGD link S000000831
Alternative ID YER029C
Description Core Sm protein Sm B; part of heteroheptameric complex (with Smd1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm B and Sm B'
Synonyms YER029C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3168 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U1 snRNP component

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g20440 GI:15237095
Arabidopsis thaliana (Ath) At5g44500 GI:15241519
Caenorhabditis elegans (Cel) CE14704
(WBGene00004915)		 GI:17509627 P91918
Drosophila melanogaster (Dme) 7297695
(FBgn0010083)		 GI:17136806
Homo sapiens (Hsa) Hs14150161 GI:14150161
Homo sapiens (Hsa) Hs4507125 GI:4507125 P14678
Homo sapiens (Hsa) Hs4507135
(SNRPN)		 GI:4507135 Q6LBS1
Saccharomyces cerevisiae (Sce) YER029c
(S000000831)		 GI:6320867 P40018
Schizosaccharomyces pombe (Spo) SPAC26A3.08 GI:19115063 Q10163


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
DmeFBgn0010083
SpoSPAC26A3.08
ISS
AthAt5g44500
At4g20440
NAS
DmeFBgn0010083
GO:0005654 nucleoplasm C
IDA
AthAt4g20440
GO:0005681 spliceosomal complex C
IC
SpoSPAC26A3.08
ISS
DmeFBgn0010083
TAS
HsaSNRPN
GO:0005682 U5 snRNP C
IDA
SceS000000831
GO:0005685 U1 snRNP C
IDA
SceS000000831
SpoSPAC26A3.08
GO:0005730 nucleolus C
IDA
AthAt5g44500
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt5g44500
At4g20440
GO:0005829 cytosol C
IDA
SpoSPAC26A3.08
GO:0015030 Cajal body C
IDA
AthAt4g20440
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0010083
NAS
DmeFBgn0010083
TAS
HsaSNRPN
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000831
ISS
SpoSPAC26A3.08
GO:0071004 U2-type prespliceosome C
IDA
SceS000000831
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0010083
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0010083
GO:0003674 molecular_function F
ND
AthAt5g44500
SceS000000831
GO:0003723 RNA binding F
RCA
SceS000000831
GO:0005515 protein binding F
IPI
HsaSNRPN
GO:0042802 identical protein binding F
IPI
HsaSNRPN
GO:0000003 reproduction P
IMP
CelWBGene00004915
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC26A3.08
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0010083
IPI
SceS000000831
ISS
DmeFBgn0010083
TAS
AthAt4g20440
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00004915
GO:0002119 nematode larval development P
IMP
CelWBGene00004915
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004915
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0010083
GO:0008380 RNA splicing P
TAS
HsaSNRPN
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004915
GO:0016070 RNA metabolic process P
NAS
DmeFBgn0010083
GO:0016071 mRNA metabolic process P
RCA
SceS000000831
GO:0040007 growth P
IMP
CelWBGene00004915
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004915

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48678

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SMB1
(S000000831)		 GI:6320867 P40018
Kluyveromyces lactis (Kla) KLLA0B00627g GI:50303233


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005682 U5 snRNP C
IDA
SceS000000831
GO:0005685 U1 snRNP C
IDA
SceS000000831
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000831
GO:0071004 U2-type prespliceosome C
IDA
SceS000000831
GO:0003674 molecular_function F
ND
SceS000000831
GO:0003723 RNA binding F
RCA
SceS000000831
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000831
GO:0016071 mRNA metabolic process P
RCA
SceS000000831

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1501

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga931 ENSANGP00000007148
Ashbya gossypii (Ago) ago2932 AER432C
Arabidopsis thaliana (Ath) ath19949 At4g20440.1
Arabidopsis thaliana (Ath) ath19950 At4g20440.2
Arabidopsis thaliana (Ath) ath26280 At5g44500.1
Caenorhabditis elegans (Cel) cel17253 W08E3.1
(CE14704;
WBGene00004915)
Candida glabrata (Cgl) cgl525 CAGL0C02497g
Cryptococcus neoformans (Cne) cne4088 185.m02760
Dictyostelium discoideum (Ddi) ddi1986 DDB0206555
Debaryomyces hansenii (Dha) dha844 DEHA0B03586g
Drosophila melanogaster (Dme) dme1831 CG5352-PA
(FBgn0010083)
Danio rerio (Dre) dre28638 ENSDARP00000023337
Gallus gallus (Gga) gga12175 ENSGALP00000011718
(SNRPB)		 Q9PV94
Homo sapiens (Hsa) hsa19681 ENSP00000303591
(SNRPB)
Homo sapiens (Hsa) hsa10303 ENSP00000306223
(SNRPN)		 Q9BPU5
Homo sapiens (Hsa) hsa10305 ENSP00000336543
(SNRPN)		 P63162
Homo sapiens (Hsa) hsa10304 ENSP00000336639
Homo sapiens (Hsa) hsa19680 ENSP00000338720
(SNRPB)		 Q9UIS4
Homo sapiens (Hsa) hsa19682 ENSP00000342803
Kluyveromyces lactis (Kla) kla556 KLLA0B00627g
Mus musculus (Mmu) mmu24099 ENSMUSP00000055941
(MGI:98347)		 P63163
Neurospora crassa (Ncr) ncr2429 NCU02508.2
Oryza sativa (Osa) osa47984 5799.m00135
Oryza sativa (Osa) osa48109 5800.m00178
Plasmodium falciparum (Pfa) pfa1474 PF14_0146
Rattus norvegicus (Rno) rno19712 ENSRNOP00000009170
Rattus norvegicus (Rno) rno2004 ENSRNOP00000021763
(RGD:621306)		 P63164
Rattus norvegicus (Rno) rno19713 ENSRNOP00000039298
(RGD:621301)		 B0BN51
Saccharomyces cerevisiae (Sce) sce1743 YER029C
(S000000831)
Schizosaccharomyces pombe (Spo) spo877 SPAC26A3.08 Q10163
Yarrowia lipolytica (Yli) yli3298 YALI0D14102g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
DmeFBgn0010083
SpoSPAC26A3.08
ISS
AthAt5g44500
At4g20440
NAS
DmeFBgn0010083
TAS
MmuMGI:98347
GO:0005654 nucleoplasm C
IDA
AthAt4g20440
GO:0005681 spliceosomal complex C
IC
SpoSPAC26A3.08
ISS
DmeFBgn0010083
PfaPF14_0146
GO:0005682 U5 snRNP C
IDA
SceS000000831
GO:0005685 U1 snRNP C
IDA
SceS000000831
SpoSPAC26A3.08
ISO
MmuMGI:98347
GO:0005686 U2 snRNP C
ISO
MmuMGI:98347
GO:0005730 nucleolus C
IDA
AthAt5g44500
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt5g44500
At4g20440
GO:0005829 cytosol C
IDA
SpoSPAC26A3.08
GO:0015030 Cajal body C
IDA
AthAt4g20440
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0010083
NAS
DmeFBgn0010083
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000831
ISS
SpoSPAC26A3.08
GO:0071004 U2-type prespliceosome C
IDA
SceS000000831
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0010083
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0010083
GO:0003674 molecular_function F
ND
AthAt5g44500
PfaPF14_0146
SceS000000831
GO:0003723 RNA binding F
RCA
SceS000000831
GO:0000003 reproduction P
IMP
CelWBGene00004915
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC26A3.08
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0010083
IPI
SceS000000831
ISS
DmeFBgn0010083
TAS
AthAt4g20440
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00004915
GO:0002119 nematode larval development P
IMP
CelWBGene00004915
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004915
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0010083
GO:0008380 RNA splicing P
ISS
PfaPF14_0146
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004915
GO:0016070 RNA metabolic process P
NAS
DmeFBgn0010083
GO:0016071 mRNA metabolic process P
RCA
SceS000000831
GO:0040007 growth P
IMP
CelWBGene00004915
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004915

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC26A3.08
(Q10163)		 YER029C
(S000000831)