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Search term: YER066W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRT13
SGD link S000000868
Alternative ID YER066W
Description Putative protein of unknown function; non-essential gene identified in a screen for mutants with decreased levels of rDNA transcription
Synonyms YER066W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0274 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Cdc4 and related F-box and WD-40 proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g25440_1 GI:15235075
Arabidopsis thaliana (Ath) At5g21040 GI:15242140
Arabidopsis thaliana (Ath) At5g40880 GI:15237513
Arabidopsis thaliana (Ath) At5g49200 GI:15239819
Arabidopsis thaliana (Ath) At5g51980 GI:15242242
Caenorhabditis elegans (Cel) CE02308
(WBGene00011332)		 GI:17535893 Q22071
Caenorhabditis elegans (Cel) CE25007 GI:17563260 Q93794
Caenorhabditis elegans (Cel) CE27762 GI:17563262
Drosophila melanogaster (Dme) 7292465 GI:17737533
Homo sapiens (Hsa) Hs11024696 GI:11024696
Homo sapiens (Hsa) Hs13994164_1 GI:13994164
Homo sapiens (Hsa) Hs14150011_2 GI:14150011
Homo sapiens (Hsa) Hs15812196
(FBXO24)		 GI:15812196 O75426
Homo sapiens (Hsa) Hs16117779 GI:16117779 Q969H0
Homo sapiens (Hsa) Hs16117781
(FBXW7)		 GI:16117781 Q969H0
Homo sapiens (Hsa) Hs22047819 GI:22047819
Homo sapiens (Hsa) Hs22047943 GI:22047943
Homo sapiens (Hsa) Hs22058783 GI:22058783
Homo sapiens (Hsa) Hs5453581 GI:5453581
Homo sapiens (Hsa) Hs6912360 GI:6912360
Saccharomyces cerevisiae (Sce) YER066w
(S000000868)		 GI:6320909 P40042
Saccharomyces cerevisiae (Sce) YFL009w
(S000001885)		 GI:14318513 P07834
Saccharomyces cerevisiae (Sce) YIL046w
(S000001308)		 GI:6322143 P39014
Saccharomyces cerevisiae (Sce) YML088w
(S000004553)		 GI:6323551 Q04511
Schizosaccharomyces pombe (Spo) SPAC4D7.03 GI:19115868 O14170
Schizosaccharomyces pombe (Spo) SPAC57A10.05c GI:19114222 P87053
Schizosaccharomyces pombe (Spo) SPBC1703.06 GI:19112993 Q9P7W4
Schizosaccharomyces pombe (Spo) SPBC2G2.18 GI:19113239
Encephalitozoon cuniculi (Ecu) ECU01g1300 GI:19075143
Arabidopsis thaliana (Ath) At4g25440_1 GI:15235075
Arabidopsis thaliana (Ath) At5g21040 GI:15242140
Arabidopsis thaliana (Ath) At5g40880 GI:15237513
Arabidopsis thaliana (Ath) At5g49200 GI:15239819
Arabidopsis thaliana (Ath) At5g51980 GI:15242242
Caenorhabditis elegans (Cel) CE02308
(WBGene00011332)		 GI:17535893 Q22071
Caenorhabditis elegans (Cel) CE25007 GI:17563260 Q93794
Caenorhabditis elegans (Cel) CE27762 GI:17563262
Drosophila melanogaster (Dme) 7292465 GI:17737533
Homo sapiens (Hsa) Hs11024696 GI:11024696
Homo sapiens (Hsa) Hs13994164_1 GI:13994164
Homo sapiens (Hsa) Hs14150011_2 GI:14150011
Homo sapiens (Hsa) Hs15812196
(FBXO24)		 GI:15812196 O75426
Homo sapiens (Hsa) Hs16117779 GI:16117779 Q969H0
Homo sapiens (Hsa) Hs16117781
(FBXW7)		 GI:16117781 Q969H0
Homo sapiens (Hsa) Hs22047819 GI:22047819
Homo sapiens (Hsa) Hs22047943 GI:22047943
Homo sapiens (Hsa) Hs22058783 GI:22058783
Homo sapiens (Hsa) Hs5453581 GI:5453581
Homo sapiens (Hsa) Hs6912360 GI:6912360
Saccharomyces cerevisiae (Sce) YER066w
(S000000868)		 GI:6320909 P40042
Saccharomyces cerevisiae (Sce) YFL009w
(S000001885)		 GI:14318513 P07834
Saccharomyces cerevisiae (Sce) YIL046w
(S000001308)		 GI:6322143 P39014
Saccharomyces cerevisiae (Sce) YML088w
(S000004553)		 GI:6323551 Q04511
Schizosaccharomyces pombe (Spo) SPAC4D7.03 GI:19115868 O14170
Schizosaccharomyces pombe (Spo) SPAC57A10.05c GI:19114222 P87053
Schizosaccharomyces pombe (Spo) SPBC1703.06 GI:19112993 Q9P7W4
Schizosaccharomyces pombe (Spo) SPBC2G2.18 GI:19113239
Encephalitozoon cuniculi (Ecu) ECU01g1300 GI:19075143
Arabidopsis thaliana (Ath) At4g25440_1 GI:15235075
Arabidopsis thaliana (Ath) At5g21040 GI:15242140
Arabidopsis thaliana (Ath) At5g40880 GI:15237513
Arabidopsis thaliana (Ath) At5g49200 GI:15239819
Arabidopsis thaliana (Ath) At5g51980 GI:15242242
Caenorhabditis elegans (Cel) CE02308
(WBGene00011332)		 GI:17535893 Q22071
Caenorhabditis elegans (Cel) CE25007 GI:17563260 Q93794
Caenorhabditis elegans (Cel) CE27762 GI:17563262
Drosophila melanogaster (Dme) 7292465 GI:17737533
Homo sapiens (Hsa) Hs11024696 GI:11024696
Homo sapiens (Hsa) Hs13994164_1 GI:13994164
Homo sapiens (Hsa) Hs14150011_2 GI:14150011
Homo sapiens (Hsa) Hs15812196
(FBXO24)		 GI:15812196 O75426
Homo sapiens (Hsa) Hs16117779 GI:16117779 Q969H0
Homo sapiens (Hsa) Hs16117781
(FBXW7)		 GI:16117781 Q969H0
Homo sapiens (Hsa) Hs22047819 GI:22047819
Homo sapiens (Hsa) Hs22047943 GI:22047943
Homo sapiens (Hsa) Hs22058783 GI:22058783
Homo sapiens (Hsa) Hs5453581 GI:5453581
Homo sapiens (Hsa) Hs6912360 GI:6912360
Saccharomyces cerevisiae (Sce) YER066w
(S000000868)		 GI:6320909 P40042
Saccharomyces cerevisiae (Sce) YFL009w
(S000001885)		 GI:14318513 P07834
Saccharomyces cerevisiae (Sce) YIL046w
(S000001308)		 GI:6322143 P39014
Saccharomyces cerevisiae (Sce) YML088w
(S000004553)		 GI:6323551 Q04511
Schizosaccharomyces pombe (Spo) SPAC4D7.03 GI:19115868 O14170
Schizosaccharomyces pombe (Spo) SPAC57A10.05c GI:19114222 P87053
Schizosaccharomyces pombe (Spo) SPBC1703.06 GI:19112993 Q9P7W4
Schizosaccharomyces pombe (Spo) SPBC2G2.18 GI:19113239
Encephalitozoon cuniculi (Ecu) ECU01g1300 GI:19075143


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000151 ubiquitin ligase complex C
ISS
SpoSPBC1703.06
NAS
HsaFBXO24
GO:0000152 nuclear ubiquitin ligase complex C
ISS
SpoSPAC57A10.05c
GO:0005575 cellular_component C
ND
AthAt5g40880
At5g51980
At4g25440
SceS000000868
GO:0005634 nucleus C
IDA
SceS000001885
S000001308
S000004553
SpoSPAC57A10.05c
GO:0005635 nuclear envelope C
IDA
SpoSPAC4D7.03
GO:0005737 cytoplasm C
IDA
SceS000004553
SpoSPBC1703.06
GO:0005829 cytosol C
IDA
SpoSPBC1703.06
GO:0016363 nuclear matrix C
IDA
SceS000001885
GO:0019005 SCF ubiquitin ligase complex C
IDA
SceS000001885
SpoSPAC4D7.03
SPAC57A10.05c
IPI
SceS000001885
S000001308
S000004553
ISS
AthAt5g21040
GO:0043224 nuclear SCF ubiquitin ligase complex C
IDA
SceS000001308
S000001885
GO:0003674 molecular_function F
ND
AthAt5g21040
SceS000000868
GO:0003676 nucleic acid binding F
ISS
AthAt5g40880
At5g49200
At5g51980
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000001885
IMP
SceS000004553
NAS
HsaFBXO24
RCA
SceS000001308
GO:0005515 protein binding F
IDA
SceS000004553
IPI
SpoSPAC57A10.05c
SPBC1703.06
SPAC4D7.03
TAS
SceS000001308
GO:0016874 ligase activity F
RCA
SceS000001308
GO:0016879 ligase activity, forming carbon-nitrogen
bonds		 F
RCA
SceS000001308
GO:0016881 acid-amino acid ligase activity F
RCA
SceS000001308
GO:0019787 small conjugating protein ligase
activity		 F
RCA
SceS000001308
GO:0030674 protein binding, bridging F
ISS
SpoSPAC57A10.05c
SPBC1703.06
SPAC4D7.03
GO:0042802 identical protein binding F
IPI
SpoSPAC4D7.03
GO:0000082 G1/S transition of mitotic cell
cycle		 P
IMP
SceS000001885
S000001308
GO:0000086 G2/M transition of mitotic cell
cycle		 P
IGI
SceS000001885
IMP
SceS000001885
GO:0000087 M phase of mitotic cell cycle P
IMP
SceS000001308
GO:0000114 regulation of transcription involved in G1 phase
of mitotic cell cycle		 P
IMP
SceS000001308
GO:0000278 mitotic cell cycle P
IC
SpoSPAC57A10.05c
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000004553
IPI
SceS000004553
TAS
SpoSPAC4D7.03
GO:0006974 response to DNA damage stimulus P
IMP
SceS000004553
IPI
SceS000004553
GO:0007126 meiosis P
IMP
SceS000001885
GO:0007346 regulation of mitotic cell cycle P
IC
SpoSPAC4D7.03
GO:0008150 biological_process P
ND
AthAt4g25440
At5g49200
At5g51980
SceS000000868
SpoSPBC1703.06
GO:0016036 cellular response to phosphate
starvation		 P
IMP
AthAt5g21040
GO:0016567 protein ubiquitination P
IGI
SceS000001308
IPI
SceS000001308
NAS
HsaFBXO24
GO:0030174 regulation of DNA-dependent DNA replication
initiation		 P
IMP
SceS000001308
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent
protein catabolic process		 P
IDA
SceS000001885
S000001308
GO:0032876 negative regulation of DNA endoreduplication P
IMP
SpoSPAC4D7.03
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IDA
SceS000001885
IPI
SpoSPAC57A10.05c
RCA
SceS000001308
GO:0046685 response to arsenic P
IDA
SceS000001308
GO:0046686 response to cadmium ion P
IDA
SceS000001308
GO:0051325 interphase P
RCA
SceS000001885
GO:0071276 cellular response to cadmium ion P
IEP
SpoSPAC57A10.05c
IGI
SpoSPAC57A10.05c

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s.khadayate@ucl.ac.uk