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Search term: YER112W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM4
SGD link S000000914
Alternative ID YER112W
Description Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Synonyms YER112W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3293 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein (snRNP)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g27720 GI:15241028
Caenorhabditis elegans (Cel) CE01277
(WBGene00003078)		 GI:17533617 Q19952
Drosophila melanogaster (Dme) 7297686 GI:7297686
Drosophila melanogaster (Dme) 7297687 GI:7297687
Homo sapiens (Hsa) Hs6912486
(LSM4)		 GI:6912486 Q9Y4Z0
Saccharomyces cerevisiae (Sce) YER112w
(S000000914)		 GI:6320958 P40070
Schizosaccharomyces pombe (Spo) SPBC30D10.06 GI:19113071 O14352
Encephalitozoon cuniculi (Ecu) ECU03g0360 GI:19172997 Q8SSB9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000914
GO:0005634 nucleus C
IDA
SpoSPBC30D10.06
ISS
AthAt5g27720
GO:0005681 spliceosomal complex C
NAS
SpoSPBC30D10.06
GO:0005682 U5 snRNP C
RCA
SceS000000914
GO:0005688 U6 snRNP C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
TAS
HsaLSM4
SceS000000914
GO:0005730 nucleolus C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000914
ISS
AthAt5g27720
SpoSPBC30D10.06
GO:0005829 cytosol C
IDA
SpoSPBC30D10.06
GO:0030532 small nuclear ribonucleoprotein
complex		 C
TAS
HsaLSM4
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
GO:0003674 molecular_function F
ND
AthAt5g27720
GO:0003723 RNA binding F
ISS
SpoSPBC30D10.06
GO:0005515 protein binding F
IPI
HsaLSM4
GO:0017070 U6 snRNA binding F
IDA
SceS000000914
IMP
SceS000000914
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000914
ISS
SpoSPBC30D10.06
TAS
SceS000000914
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000914
GO:0006364 rRNA processing P
ISS
SpoSPBC30D10.06
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC30D10.06
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003078
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00003078
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003078
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g27720
GO:0010171 body morphogenesis P
IMP
CelWBGene00003078
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000914
IMP
SceS000000914
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003078
GO:0040011 locomotion P
IMP
CelWBGene00003078
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00003078

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
99750

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) LSM4
(S000000914)		 GI:6320958 P40070
Kluyveromyces lactis (Kla) KLLA0E20889g GI:50309757
Eremothecium gossypii (Ego) AGOS_AGL296W GI:45200801


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000914
GO:0005682 U5 snRNP C
RCA
SceS000000914
GO:0005688 U6 snRNP C
IDA
SceS000000914
TAS
SceS000000914
GO:0005730 nucleolus C
IDA
SceS000000914
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000914
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000914
GO:0017070 U6 snRNA binding F
IDA
SceS000000914
IMP
SceS000000914
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000914
TAS
SceS000000914
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000914
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000914
IMP
SceS000000914

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2067

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11897 ENSANGP00000016613
Ashbya gossypii (Ago) ago4016 AGL296W
Arabidopsis thaliana (Ath) ath25046 At5g27720.1
Caenorhabditis elegans (Cel) cel7849 F32A5.7
(CE01277;
WBGene00003078)
Candida glabrata (Cgl) cgl1775 CAGL0G03465g
Cryptococcus neoformans (Cne) cne5579 179.m00439
Dictyostelium discoideum (Ddi) ddi9397 DDB0187253
Debaryomyces hansenii (Dha) dha942 DEHA0B05786g
Drosophila melanogaster (Dme) dme1821 CG31990-PA
Danio rerio (Dre) dre11907 ENSDARP00000037344
Encephalitozoon cuniculi (Ecu) ecu404 19172997
Takifugu rubripes (Fru) fru32429 SINFRUP00000146596
Gallus gallus (Gga) gga14174 ENSGALP00000005338
(LSM4)
Gallus gallus (Gga) gga14175 ENSGALP00000005339
Homo sapiens (Hsa) hsa15939 ENSP00000252816
(LSM4)		 Q9Y4Z0
Kluyveromyces lactis (Kla) kla3890 KLLA0E20889g
Mus musculus (Mmu) mmu26126 ENSMUSP00000034311
(MGI:1354692)		 Q9CY46
Neurospora crassa (Ncr) ncr7481 NCU07683.2
Oryza sativa (Osa) osa9677 2710.m00122
Oryza sativa (Osa) osa9616 2735.m00174
Plasmodium falciparum (Pfa) pfa960 PF11_0524
Rattus norvegicus (Rno) rno12218 ENSRNOP00000026567
(RGD:1306808)
Saccharomyces cerevisiae (Sce) sce1849 YER112W
(S000000914)
Schizosaccharomyces pombe (Spo) spo1917 SPBC30D10.06 O14352
Yarrowia lipolytica (Yli) yli672 YALI0A19756g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000914
GO:0005634 nucleus C
IDA
SpoSPBC30D10.06
ISS
AthAt5g27720
GO:0005654 nucleoplasm C
ISS
MmuMGI:1354692
GO:0005681 spliceosomal complex C
ISS
MmuMGI:1354692
NAS
SpoSPBC30D10.06
GO:0005682 U5 snRNP C
RCA
SceS000000914
GO:0005688 U6 snRNP C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
TAS
SceS000000914
GO:0005730 nucleolus C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000914
ISS
AthAt5g27720
SpoSPBC30D10.06
GO:0005737 cytoplasm C
ISS
MmuMGI:1354692
GO:0005829 cytosol C
IDA
SpoSPBC30D10.06
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
GO:0003674 molecular_function F
ND
AthAt5g27720
MmuMGI:1354692
GO:0003723 RNA binding F
ISS
SpoSPBC30D10.06
GO:0017070 U6 snRNA binding F
IDA
SceS000000914
IMP
SceS000000914
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000914
ISS
SpoSPBC30D10.06
TAS
SceS000000914
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000914
GO:0006364 rRNA processing P
ISS
SpoSPBC30D10.06
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC30D10.06
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003078
GO:0008150 biological_process P
ND
MmuMGI:1354692
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00003078
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003078
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g27720
GO:0010171 body morphogenesis P
IMP
CelWBGene00003078
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000914
IMP
SceS000000914
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003078
GO:0040011 locomotion P
IMP
CelWBGene00003078
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00003078

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC30D10.06
(O14352)		 YER112W
(S000000914)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000914
GO:0005634 nucleus C
IDA
SpoSPBC30D10.06
GO:0005681 spliceosomal complex C
NAS
SpoSPBC30D10.06
GO:0005682 U5 snRNP C
RCA
SceS000000914
GO:0005688 U6 snRNP C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
TAS
SceS000000914
GO:0005730 nucleolus C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000914
ISS
SpoSPBC30D10.06
GO:0005829 cytosol C
IDA
SpoSPBC30D10.06
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000914
ISS
SpoSPBC30D10.06
GO:0003723 RNA binding F
ISS
SpoSPBC30D10.06
GO:0017070 U6 snRNA binding F
IDA
SceS000000914
IMP
SceS000000914
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000914
ISS
SpoSPBC30D10.06
TAS
SceS000000914
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000914
GO:0006364 rRNA processing P
ISS
SpoSPBC30D10.06
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC30D10.06
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000914
IMP
SceS000000914

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

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