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Search term: YER146W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM5
SGD link S000000948
Alternative ID YER146W
Description Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Synonyms YER146W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1775 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U6 snRNA-associated Sm-like protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g48870 GI:15239727
Caenorhabditis elegans (Cel) CE09757
(WBGene00003079)
GI:17560310 O18694
Drosophila melanogaster (Dme) 7295386 GI:7295386
Homo sapiens (Hsa) Hs6912488
(LSM5)
GI:6912488 Q9Y4Y9
Saccharomyces cerevisiae (Sce) YER146w
(S000000948)
GI:6320994 P40089
Schizosaccharomyces pombe (Spo) SPBC20F10.09 GI:19113165 O42978


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC20F10.09
ISS
AthAt5g48870
GO:0005681 spliceosomal complex C
NAS
SpoSPBC20F10.09
GO:0005688 U6 snRNP C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
TAS
SceS000000948
GO:0005730 nucleolus C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
GO:0005732 small nucleolar ribonucleoprotein
complex
C
IPI
SceS000000948
ISS
AthAt5g48870
SpoSPBC20F10.09
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
GO:0003723 RNA binding F
IDA
SceS000000948
IPI
SceS000000948
ISS
AthAt5g48870
SpoSPBC20F10.09
GO:0005515 protein binding F
IPI
HsaLSM5
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000948
ISS
SpoSPBC20F10.09
GO:0000956 nuclear-transcribed mRNA catabolic
process
P
TAS
SceS000000948
GO:0006364 rRNA processing P
ISS
SpoSPBC20F10.09
GO:0006399 tRNA metabolic process P
RCA
SceS000000948
GO:0006401 RNA catabolic process P
RCA
SceS000000948
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC20F10.09
GO:0009414 response to water deprivation P
IMP
AthAt5g48870
GO:0009737 response to abscisic acid stimulus P
IMP
AthAt5g48870
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003079

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38958

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) LSM5
(S000000948)
GI:6320994 P40089
Kluyveromyces lactis (Kla) KLLA0E10186g GI:50308811
Eremothecium gossypii (Ego) AGOS_AGR130W GI:45201226


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005688 U6 snRNP C
IDA
SceS000000948
TAS
SceS000000948
GO:0005730 nucleolus C
IDA
SceS000000948
GO:0005732 small nucleolar ribonucleoprotein
complex
C
IPI
SceS000000948
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000948
GO:0003723 RNA binding F
IDA
SceS000000948
IPI
SceS000000948
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000948
GO:0000956 nuclear-transcribed mRNA catabolic
process
P
TAS
SceS000000948
GO:0006399 tRNA metabolic process P
RCA
SceS000000948
GO:0006401 RNA catabolic process P
RCA
SceS000000948

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2552

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga2050 ENSANGP00000011511
Ashbya gossypii (Ago) ago4441 AGR130W
Arabidopsis thaliana (Ath) ath26794 At5g48870.1
Caenorhabditis elegans (Cel) cel7606 F28F8.3
(CE09757;
WBGene00003079)
Candida glabrata (Cgl) cgl2813 CAGL0I06721g
Cryptococcus neoformans (Cne) cne1830 181.m07799
Dictyostelium discoideum (Ddi) ddi384 DDB0189977
Debaryomyces hansenii (Dha) dha5572 DEHA0F26554g
Drosophila melanogaster (Dme) dme8186 CG6610-PA
(FBgn0035675)
Takifugu rubripes (Fru) fru27632 SINFRUP00000128377
Gallus gallus (Gga) gga10236 ENSGALP00000019908
(LSM5)
Homo sapiens (Hsa) hsa28432 ENSP00000223084
(LSM5)
C9JGU8
Kluyveromyces lactis (Kla) kla3409 KLLA0E10186g
Mus musculus (Mmu) mmu132 ENSMUSP00000064031
Mus musculus (Mmu) mmu21925 ENSMUSP00000076780
Oryza sativa (Osa) osa26688 3952.m00075
Oryza sativa (Osa) osa29182 4271.m00147
Oryza sativa (Osa) osa60640 6419.m00186
Plasmodium falciparum (Pfa) pfa1862 PF14_0411
Rattus norvegicus (Rno) rno11911 ENSRNOP00000014428
Rattus norvegicus (Rno) rno25435 ENSRNOP00000029367
Saccharomyces cerevisiae (Sce) sce1889 YER146W
(S000000948)
Schizosaccharomyces pombe (Spo) spo3707 SPBC20F10.09 O42978
Yarrowia lipolytica (Yli) yli1319 YALI0B14058g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC20F10.09
ISS
AthAt5g48870
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0035675
NAS
SpoSPBC20F10.09
GO:0005688 U6 snRNP C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
NAS
DmeFBgn0035675
TAS
SceS000000948
GO:0005730 nucleolus C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
GO:0005732 small nucleolar ribonucleoprotein
complex
C
IPI
SceS000000948
ISS
AthAt5g48870
PfaPF14_0411
SpoSPBC20F10.09
GO:0030532 small nuclear ribonucleoprotein
complex
C
ISS
DmeFBgn0035675
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
GO:0003674 molecular_function F
ND
PfaPF14_0411
GO:0003723 RNA binding F
IDA
SceS000000948
IPI
SceS000000948
ISS
AthAt5g48870
SpoSPBC20F10.09
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000948
ISS
DmeFBgn0035675
SpoSPBC20F10.09
GO:0000956 nuclear-transcribed mRNA catabolic
process
P
TAS
SceS000000948
GO:0006364 rRNA processing P
ISS
SpoSPBC20F10.09
GO:0006399 tRNA metabolic process P
RCA
SceS000000948
GO:0006401 RNA catabolic process P
RCA
SceS000000948
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC20F10.09
GO:0008380 RNA splicing P
ISS
PfaPF14_0411
GO:0009414 response to water deprivation P
IMP
AthAt5g48870
GO:0009737 response to abscisic acid stimulus P
IMP
AthAt5g48870
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003079

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC20F10.09
(O42978)
YER146W
(S000000948)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC20F10.09
GO:0005681 spliceosomal complex C
NAS
SpoSPBC20F10.09
GO:0005688 U6 snRNP C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
TAS
SceS000000948
GO:0005730 nucleolus C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
GO:0005732 small nucleolar ribonucleoprotein
complex
C
IPI
SceS000000948
ISS
SpoSPBC20F10.09
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000948
ISS
SpoSPBC20F10.09
GO:0003723 RNA binding F
IDA
SceS000000948
IPI
SceS000000948
ISS
SpoSPBC20F10.09
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000948
ISS
SpoSPBC20F10.09
GO:0000956 nuclear-transcribed mRNA catabolic
process
P
TAS
SceS000000948
GO:0006364 rRNA processing P
ISS
SpoSPBC20F10.09
GO:0006399 tRNA metabolic process P
RCA
SceS000000948
GO:0006401 RNA catabolic process P
RCA
SceS000000948
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC20F10.09

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GO info in one table:

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