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Search term: YER162C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RAD4
SGD link S000000964
Alternative ID YER162C
Description Protein that recognizes and binds damaged DNA (with Rad23p) during nucleotide excision repair; subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human XPC protein
Synonyms YER162C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2179 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g16630 GI:15237383
Caenorhabditis elegans (Cel) CE25606 GI:17544222
Drosophila melanogaster (Dme) 7303083
(FBgn0004698)		 GI:17136712
Homo sapiens (Hsa) Hs20127460 GI:20127460
Saccharomyces cerevisiae (Sce) YDR314c
(S000002722)		 GI:6320520 Q06665
Saccharomyces cerevisiae (Sce) YER162c
(S000000964)		 GI:6321010 P14736
Schizosaccharomyces pombe (Spo) SPAC12B10.12c GI:19115556 Q10445
Schizosaccharomyces pombe (Spo) SPCC4G3.10c GI:19075328 P87235
Encephalitozoon cuniculi (Ecu) ECU01g0450 GI:19075054


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000964
GO:0000109 nucleotide-excision repair complex C
ISS
SpoSPAC12B10.12c
SPCC4G3.10c
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000964
GO:0005634 nucleus C
IDA
SceS000002722
SpoSPAC12B10.12c
ISS
AthAt5g16630
NAS
DmeFBgn0004698
GO:0005730 nucleolus C
IDA
SpoSPCC4G3.10c
GO:0005819 spindle C
IDA
SpoSPAC12B10.12c
GO:0009507 chloroplast C
IDA
AthAt5g16630
GO:0003674 molecular_function F
ND
SceS000002722
GO:0003684 damaged DNA binding F
IDA
SceS000000964
ISS
AthAt5g16630
DmeFBgn0004698
SpoSPCC4G3.10c
GO:0006289 nucleotide-excision repair P
IGI
SpoSPAC12B10.12c
SPCC4G3.10c
IMP
SceS000002722
S000000964
ISS
AthAt5g16630
DmeFBgn0004698
GO:0006298 mismatch repair P
IGI
SpoSPCC4G3.10c
SPAC12B10.12c
GO:0006914 autophagy P
RCA
SceS000000964
GO:0042176 regulation of protein catabolic
process		 P
RCA
SceS000002722

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38966

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) rhp41
(SPAC12B10.12c)		 GI:19115556 Q10445
Saccharomyces cerevisiae (Sce) RAD4
(S000000964)		 GI:6321010 P14736
Kluyveromyces lactis (Kla) KLLA0F14465g GI:50311411
Eremothecium gossypii (Ego) AGOS_AGR162C GI:45201258
Magnaporthe grisea (Mgr) MGG_12211 GI:145607525


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000964
GO:0000109 nucleotide-excision repair complex C
ISS
SpoSPAC12B10.12c
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000964
GO:0005634 nucleus C
IDA
SpoSPAC12B10.12c
GO:0005819 spindle C
IDA
SpoSPAC12B10.12c
GO:0003684 damaged DNA binding F
IDA
SceS000000964
GO:0006289 nucleotide-excision repair P
IGI
SpoSPAC12B10.12c
IMP
SceS000000964
GO:0006298 mismatch repair P
IGI
SpoSPAC12B10.12c
GO:0006914 autophagy P
RCA
SceS000000964

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1750

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga13053 ENSANGP00000013795
Anopheles gambiae (Aga) aga5724 ENSANGP00000014411
Anopheles gambiae (Aga) aga5720 ENSANGP00000014415
Anopheles gambiae (Aga) aga4069 ENSANGP00000018339
Ashbya gossypii (Ago) ago4473 AGR162C
Arabidopsis thaliana (Ath) ath23892 At5g16630.1
Caenorhabditis elegans (Cel) cel20890 Y76B12C.2
(CE31668;
WBGene00022296)
Candida glabrata (Cgl) cgl4585 CAGL0L11726g
Cryptococcus neoformans (Cne) cne522 163.m06525
Dictyostelium discoideum (Ddi) ddi11174 DDB0184310
Debaryomyces hansenii (Dha) dha4645 DEHA0F05808g
Drosophila melanogaster (Dme) dme5214 CG8153-PA
(FBgn0004698)
Drosophila melanogaster (Dme) dme5215 CG8153-PB
(FBgn0004698)
Drosophila melanogaster (Dme) dme5216 CG8153-PC
(FBgn0004698)
Danio rerio (Dre) dre31863 ENSDARP00000039631
Danio rerio (Dre) dre31759 ENSDARP00000050633
Encephalitozoon cuniculi (Ecu) ecu1691 19075054
Takifugu rubripes (Fru) fru4333 SINFRUP00000145945
Gallus gallus (Gga) gga5302 ENSGALP00000010261
(XPC)
Homo sapiens (Hsa) hsa22119 ENSP00000285021
(XPC)		 Q01831
Kluyveromyces lactis (Kla) kla4730 KLLA0F14465g
Mus musculus (Mmu) mmu22360 ENSMUSP00000032182
(MGI:103557)		 P51612
Mus musculus (Mmu) mmu22361 ENSMUSP00000060522
Neurospora crassa (Ncr) ncr4682 NCU04821.2
Neurospora crassa (Ncr) ncr6403 NCU06585.2
Oryza sativa (Osa) osa16583 3083.m00105
Oryza sativa (Osa) osa74325 7294.m00073
Rattus norvegicus (Rno) rno21865 ENSRNOP00000011204
Rattus norvegicus (Rno) rno21864 ENSRNOP00000011490
(RGD:1305760)
Saccharomyces cerevisiae (Sce) sce1910 YER162C
(S000000964)
Schizosaccharomyces pombe (Spo) spo4082 SPAC12B10.12c Q10445
Schizosaccharomyces pombe (Spo) spo3697 SPCC4G3.10c P87235
Yarrowia lipolytica (Yli) yli3072 YALI0D08756g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000964
GO:0000109 nucleotide-excision repair complex C
ISS
SpoSPAC12B10.12c
SPCC4G3.10c
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000964
GO:0005634 nucleus C
IDA
MmuMGI:103557
SpoSPAC12B10.12c
ISO
MmuMGI:103557
ISS
AthAt5g16630
NAS
DmeFBgn0004698
GO:0005730 nucleolus C
IDA
SpoSPCC4G3.10c
GO:0005737 cytoplasm C
ISO
MmuMGI:103557
GO:0005819 spindle C
IDA
SpoSPAC12B10.12c
GO:0009507 chloroplast C
IDA
AthAt5g16630
GO:0003684 damaged DNA binding F
IDA
SceS000000964
ISS
AthAt5g16630
DmeFBgn0004698
SpoSPCC4G3.10c
GO:0006281 DNA repair P
IMP
MmuMGI:103557
GO:0006289 nucleotide-excision repair P
IDA
MmuMGI:103557
IGI
SpoSPAC12B10.12c
SPCC4G3.10c
IMP
MmuMGI:103557
SceS000000964
ISS
AthAt5g16630
DmeFBgn0004698
GO:0006298 mismatch repair P
IGI
SpoSPCC4G3.10c
SPAC12B10.12c
GO:0006914 autophagy P
RCA
SceS000000964
GO:0006974 response to DNA damage stimulus P
IMP
MmuMGI:103557
GO:0010224 response to UV-B P
IMP
MmuMGI:103557
GO:0031573 intra-S DNA damage checkpoint P
IGI
MmuMGI:103557

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC4G3.10c
(P87235)		 YER162C
(S000000964)
SPAC12B10.12c
(Q10445)		 YER162C
(S000000964)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000964
GO:0000109 nucleotide-excision repair complex C
ISS
SpoSPAC12B10.12c
SPCC4G3.10c
GO:0000111 nucleotide-excision repair factor 2
complex		 C
IDA
SceS000000964
GO:0005634 nucleus C
IDA
SpoSPAC12B10.12c
GO:0005730 nucleolus C
IDA
SpoSPCC4G3.10c
GO:0005819 spindle C
IDA
SpoSPAC12B10.12c
GO:0003684 damaged DNA binding F
IDA
SceS000000964
ISS
SpoSPCC4G3.10c
GO:0006289 nucleotide-excision repair P
IGI
SpoSPAC12B10.12c
SPCC4G3.10c
IMP
SceS000000964
GO:0006298 mismatch repair P
IGI
SpoSPCC4G3.10c
SPAC12B10.12c
GO:0006914 autophagy P
RCA
SceS000000964

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