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Search term: YER164W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CHD1
SGD link S000000966
Alternative ID YER164W
Description Nucleosome remodeling factor that functions in regulation of transcription elongation; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SLIK complexes
Synonyms YER164W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0384 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Chromodomain-helicase DNA-binding protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g08060 GI:15223095
Arabidopsis thaliana (Ath) At2g13370 GI:15225028
Caenorhabditis elegans (Cel) CE11572 GI:17507917
Caenorhabditis elegans (Cel) CE18196 GI:17508849
Drosophila melanogaster (Dme) 7295870
(FBgn0016132)		 GI:17137266 Q7KU24
Drosophila melanogaster (Dme) 7296236 GI:7296236
Homo sapiens (Hsa) Hs13376715 GI:13376715
Homo sapiens (Hsa) Hs21362042 GI:19421557 Q9H6D4
Homo sapiens (Hsa) Hs22047300 GI:22047300
Homo sapiens (Hsa) Hs22047966 GI:22047966
Homo sapiens (Hsa) Hs22048060 GI:22048060
Homo sapiens (Hsa) Hs22048063 GI:22048063
Homo sapiens (Hsa) Hs22066125 GI:22066125
Homo sapiens (Hsa) Hs4557447 GI:4557447
Homo sapiens (Hsa) Hs4557449 GI:4557449
Homo sapiens (Hsa) HsM14149926 GI:14149926
Saccharomyces cerevisiae (Sce) YER164w
(S000000966)		 GI:6321012 P32657
Schizosaccharomyces pombe (Spo) SPAC1783.05 GI:19114572 Q9US25
Schizosaccharomyces pombe (Spo) SPAC3G6.01 GI:19115879 O14139
Encephalitozoon cuniculi (Ecu) ECU01g0350 GI:19075044
Arabidopsis thaliana (Ath) At1g08060 GI:15223095
Arabidopsis thaliana (Ath) At2g13370 GI:15225028
Caenorhabditis elegans (Cel) CE11572 GI:17507917
Caenorhabditis elegans (Cel) CE18196 GI:17508849
Drosophila melanogaster (Dme) 7295870
(FBgn0016132)		 GI:17137266 Q7KU24
Drosophila melanogaster (Dme) 7296236 GI:7296236
Homo sapiens (Hsa) Hs13376715 GI:13376715
Homo sapiens (Hsa) Hs21362042 GI:19421557 Q9H6D4
Homo sapiens (Hsa) Hs22047300 GI:22047300
Homo sapiens (Hsa) Hs22047966 GI:22047966
Homo sapiens (Hsa) Hs22048060 GI:22048060
Homo sapiens (Hsa) Hs22048063 GI:22048063
Homo sapiens (Hsa) Hs22066125 GI:22066125
Homo sapiens (Hsa) Hs4557447 GI:4557447
Homo sapiens (Hsa) Hs4557449 GI:4557449
Homo sapiens (Hsa) HsM14149926 GI:14149926
Saccharomyces cerevisiae (Sce) YER164w
(S000000966)		 GI:6321012 P32657
Schizosaccharomyces pombe (Spo) SPAC1783.05 GI:19114572 Q9US25
Schizosaccharomyces pombe (Spo) SPAC3G6.01 GI:19115879 O14139
Encephalitozoon cuniculi (Ecu) ECU01g0350 GI:19075044
Arabidopsis thaliana (Ath) At1g08060 GI:15223095
Arabidopsis thaliana (Ath) At2g13370 GI:15225028
Caenorhabditis elegans (Cel) CE11572 GI:17507917
Caenorhabditis elegans (Cel) CE18196 GI:17508849
Drosophila melanogaster (Dme) 7295870
(FBgn0016132)		 GI:17137266 Q7KU24
Drosophila melanogaster (Dme) 7296236 GI:7296236
Homo sapiens (Hsa) Hs13376715 GI:13376715
Homo sapiens (Hsa) Hs21362042 GI:19421557 Q9H6D4
Homo sapiens (Hsa) Hs22047300 GI:22047300
Homo sapiens (Hsa) Hs22047966 GI:22047966
Homo sapiens (Hsa) Hs22048060 GI:22048060
Homo sapiens (Hsa) Hs22048063 GI:22048063
Homo sapiens (Hsa) Hs22066125 GI:22066125
Homo sapiens (Hsa) Hs4557447 GI:4557447
Homo sapiens (Hsa) Hs4557449 GI:4557449
Homo sapiens (Hsa) HsM14149926 GI:14149926
Saccharomyces cerevisiae (Sce) YER164w
(S000000966)		 GI:6321012 P32657
Schizosaccharomyces pombe (Spo) SPAC1783.05 GI:19114572 Q9US25
Schizosaccharomyces pombe (Spo) SPAC3G6.01 GI:19115879 O14139
Encephalitozoon cuniculi (Ecu) ECU01g0350 GI:19075044


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000000966
GO:0000779 condensed chromosome, centromeric
region		 C
IDA
SpoSPAC1783.05
GO:0000790 nuclear chromatin C
IC
SpoSPAC1783.05
NAS
SpoSPAC3G6.01
GO:0005634 nucleus C
IDA
AthAt1g08060
SpoSPAC1783.05
SPAC3G6.01
NAS
SpoSPAC3G6.01
GO:0005739 mitochondrion C
IDA
SceS000000966
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000000966
GO:0031934 mating-type region heterochromatin C
IDA
SpoSPAC3G6.01
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000000966
GO:0003677 DNA binding F
ISS
AthAt2g13370
NAS
SpoSPAC3G6.01
TAS
SpoSPAC1783.05
GO:0003682 chromatin binding F
ISS
AthAt2g13370
GO:0004003 ATP-dependent DNA helicase activity F
IDA
SpoSPAC3G6.01
ISS
SpoSPAC1783.05
GO:0004386 helicase activity F
ISS
AthAt2g13370
RCA
SceS000000966
GO:0005515 protein binding F
IPI
SpoSPAC1783.05
SPAC3G6.01
GO:0005524 ATP binding F
IC
SpoSPAC3G6.01
ISS
AthAt2g13370
GO:0008094 DNA-dependent ATPase activity F
IDA
SpoSPAC1783.05
ISS
SpoSPAC3G6.01
RCA
SceS000000966
GO:0016887 ATPase activity F
IDA
SceS000000966
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000000966
GO:0042623 ATPase activity, coupled F
RCA
SceS000000966
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPAC3G6.01
GO:0006200 ATP catabolic process P
IDA
SpoSPAC3G6.01
ISS
SpoSPAC1783.05
GO:0006333 chromatin assembly or disassembly P
ISS
AthAt2g13370
GO:0006338 chromatin remodeling P
IDA
SceS000000966
IMP
SpoSPAC1783.05
NAS
SpoSPAC3G6.01
GO:0006342 chromatin silencing P
IMP
AthAt1g08060
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000000966
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SpoSPAC1783.05
GO:0007076 mitotic chromosome condensation P
IMP
SpoSPAC1783.05
GO:0016584 nucleosome positioning P
IDA
SceS000000966
GO:0030466 chromatin silencing at silent mating-type
cassette		 P
IMP
SpoSPAC1783.05
SPAC3G6.01
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPAC1783.05
GO:0035067 negative regulation of histone
acetylation		 P
IMP
SpoSPAC1783.05
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IEP
SpoSPAC3G6.01
SPAC1783.05
IMP
SceS000000966
GO:0048096 chromatin-mediated maintenance of
transcription		 P
TAS
SpoSPAC1783.05
GO:0060303 regulation of nucleosome density P
IMP
SpoSPAC3G6.01
SPAC1783.05

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68174

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) CHD1 GI:68299795
Pan troglodytes (Ptr) CHD1 GI:114600959
Canis familiaris (Cfa) CHD1 GI:73951996
Mus musculus (Mmu) Chd1
(MGI:88393)		 GI:6680928 P40201
Gallus gallus (Gga) CHD1 GI:45384402
Caenorhabditis elegans (Cel) H06O01.2
(CE32454;
WBGene00010369)		 GI:32563629
Schizosaccharomyces pombe (Spo) hrp3
(SPAC3G6.01)		 GI:19115879 O14139
Schizosaccharomyces pombe (Spo) chd1 GI:19114572
Saccharomyces cerevisiae (Sce) CHD1
(S000000966)		 GI:6321012 P32657
Kluyveromyces lactis (Kla) KLLA0C17578g GI:50306047
Eremothecium gossypii (Ego) AGOS_AGR123C GI:45201219
Plasmodium falciparum (Pfa) PF10_0232 GI:124802575


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000000966
GO:0000790 nuclear chromatin C
NAS
SpoSPAC3G6.01
GO:0005634 nucleus C
IDA
SpoSPAC3G6.01
NAS
MmuMGI:88393
SpoSPAC3G6.01
GO:0005739 mitochondrion C
IDA
SceS000000966
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000000966
GO:0031934 mating-type region heterochromatin C
IDA
SpoSPAC3G6.01
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000000966
GO:0003677 DNA binding F
NAS
SpoSPAC3G6.01
GO:0003682 chromatin binding F
NAS
MmuMGI:88393
GO:0004003 ATP-dependent DNA helicase activity F
IDA
SpoSPAC3G6.01
TAS
HsaCHD1
GO:0004386 helicase activity F
NAS
MmuMGI:88393
RCA
SceS000000966
GO:0005515 protein binding F
IPI
SpoSPAC3G6.01
GO:0005524 ATP binding F
IC
SpoSPAC3G6.01
GO:0008094 DNA-dependent ATPase activity F
ISS
SpoSPAC3G6.01
RCA
SceS000000966
GO:0016887 ATPase activity F
IDA
SceS000000966
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000000966
GO:0042623 ATPase activity, coupled F
RCA
SceS000000966
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPAC3G6.01
GO:0006200 ATP catabolic process P
IDA
SpoSPAC3G6.01
GO:0006333 chromatin assembly or disassembly P
NAS
MmuMGI:88393
GO:0006338 chromatin remodeling P
IDA
SceS000000966
IGI
MmuMGI:88393
NAS
SpoSPAC3G6.01
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
HsaCHD1
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000000966
GO:0008152 metabolic process P
NAS
MmuMGI:88393
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010369
GO:0016584 nucleosome positioning P
IDA
SceS000000966
GO:0030466 chromatin silencing at silent mating-type
cassette		 P
IMP
SpoSPAC3G6.01
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IEP
SpoSPAC3G6.01
IMP
SceS000000966
GO:0060303 regulation of nucleosome density P
IMP
SpoSPAC3G6.01

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_487

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10727 ENSANGP00000011045
Ashbya gossypii (Ago) ago4434 AGR123C
Arabidopsis thaliana (Ath) ath8232 At2g13370.1
Caenorhabditis elegans (Cel) cel11248 H06O01.2
(CE32454;
WBGene00010369)
Candida glabrata (Cgl) cgl4587 CAGL0L11770g
Cryptococcus neoformans (Cne) cne216 162.m02661
Dictyostelium discoideum (Ddi) ddi13057 DDB0220640
Debaryomyces hansenii (Dha) dha6292 DEHA0G13277g
Drosophila melanogaster (Dme) dme510 CG3733-PA
(FBgn0016132)
Danio rerio (Dre) dre25542 ENSDARP00000015265
Danio rerio (Dre) dre29396 ENSDARP00000015894
Danio rerio (Dre) dre29393 ENSDARP00000018989
Danio rerio (Dre) dre25538 ENSDARP00000023993
Danio rerio (Dre) dre25543 ENSDARP00000027632
Danio rerio (Dre) dre29398 ENSDARP00000037783
Danio rerio (Dre) dre25541 ENSDARP00000038636
Danio rerio (Dre) dre25537 ENSDARP00000042290
Danio rerio (Dre) dre25539 ENSDARP00000046312
Danio rerio (Dre) dre25540 ENSDARP00000047672
Danio rerio (Dre) dre29395 ENSDARP00000047720
Danio rerio (Dre) dre29397 ENSDARP00000050744
(LOC563236)
Takifugu rubripes (Fru) fru29105 SINFRUP00000149000
Takifugu rubripes (Fru) fru29102 SINFRUP00000149010
Takifugu rubripes (Fru) fru7463 SINFRUP00000160883
Takifugu rubripes (Fru) fru7464 SINFRUP00000160885
Takifugu rubripes (Fru) fru7466 SINFRUP00000166821
Takifugu rubripes (Fru) fru7465 SINFRUP00000169554
Takifugu rubripes (Fru) fru29103 SINFRUP00000172811
Takifugu rubripes (Fru) fru29104 SINFRUP00000175953
Takifugu rubripes (Fru) fru7467 SINFRUP00000176212
Gallus gallus (Gga) gga4081 ENSGALP00000011245
Gallus gallus (Gga) gga4082 ENSGALP00000011246
(CHD2)
Gallus gallus (Gga) gga4083 ENSGALP00000011247
Gallus gallus (Gga) gga4080 ENSGALP00000011248
Gallus gallus (Gga) gga27416 ENSGALP00000023553
(CHD1)		 Q9DGQ2
Gallus gallus (Gga) gga27418 ENSGALP00000023555
(CHD1)
Homo sapiens (Hsa) hsa25539 ENSP00000284049
(CHD1)		 O14646-1
Homo sapiens (Hsa) hsa11210 ENSP00000311700
(CHD2)		 O14647-2
Kluyveromyces lactis (Kla) kla1984 KLLA0C17578g
Mus musculus (Mmu) mmu10874 ENSMUSP00000024627
(MGI:88393)		 Q14BJ0
Mus musculus (Mmu) mmu24182 ENSMUSP00000038545
(MGI:2448567)		 Q3V0V7
Mus musculus (Mmu) mmu24178 ENSMUSP00000073897
Mus musculus (Mmu) mmu24179 ENSMUSP00000075297
Mus musculus (Mmu) mmu24181 ENSMUSP00000078477
Mus musculus (Mmu) mmu24180 ENSMUSP00000079335
Neurospora crassa (Ncr) ncr2965 NCU03060.2
Oryza sativa (Osa) osa4883 2128.m00099
Oryza sativa (Osa) osa53221 5955.m00125
Oryza sativa (Osa) osa51610 5981.m00119
Plasmodium falciparum (Pfa) pfa450 PF10_0232
Rattus norvegicus (Rno) rno2086 ENSRNOP00000017144
Rattus norvegicus (Rno) rno603 ENSRNOP00000019358
(RGD:1306794)
Saccharomyces cerevisiae (Sce) sce1912 YER164W
(S000000966)
Schizosaccharomyces pombe (Spo) spo4933 SPAC1783.05 Q9US25
Schizosaccharomyces pombe (Spo) spo4253 SPAC3G6.01 O14139
Yarrowia lipolytica (Yli) yli1737 YALI0C00363g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000000966
GO:0000779 condensed chromosome, centromeric
region		 C
IDA
SpoSPAC1783.05
GO:0000790 nuclear chromatin C
IC
SpoSPAC1783.05
NAS
SpoSPAC3G6.01
GO:0005575 cellular_component C
ND
MmuMGI:2448567
GO:0005634 nucleus C
IDA
SpoSPAC1783.05
SPAC3G6.01
NAS
MmuMGI:88393
SpoSPAC3G6.01
GO:0005739 mitochondrion C
IDA
SceS000000966
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000000966
GO:0031934 mating-type region heterochromatin C
IDA
SpoSPAC3G6.01
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000000966
GO:0003674 molecular_function F
ND
MmuMGI:2448567
GO:0003677 DNA binding F
ISS
AthAt2g13370
NAS
SpoSPAC3G6.01
TAS
SpoSPAC1783.05
GO:0003682 chromatin binding F
ISS
AthAt2g13370
NAS
MmuMGI:88393
GO:0004003 ATP-dependent DNA helicase activity F
IDA
SpoSPAC3G6.01
ISS
SpoSPAC1783.05
GO:0004386 helicase activity F
ISS
AthAt2g13370
NAS
MmuMGI:88393
RCA
SceS000000966
GO:0005515 protein binding F
IPI
SpoSPAC1783.05
SPAC3G6.01
GO:0005524 ATP binding F
IC
SpoSPAC3G6.01
ISS
AthAt2g13370
GO:0008094 DNA-dependent ATPase activity F
IDA
SpoSPAC1783.05
ISS
SpoSPAC3G6.01
RCA
SceS000000966
GO:0016887 ATPase activity F
IDA
SceS000000966
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000000966
GO:0042623 ATPase activity, coupled F
RCA
SceS000000966
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPAC3G6.01
GO:0006200 ATP catabolic process P
IDA
SpoSPAC3G6.01
ISS
SpoSPAC1783.05
GO:0006333 chromatin assembly or disassembly P
ISS
AthAt2g13370
NAS
MmuMGI:88393
GO:0006338 chromatin remodeling P
IDA
SceS000000966
IGI
MmuMGI:88393
IMP
SpoSPAC1783.05
NAS
SpoSPAC3G6.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000000966
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SpoSPAC1783.05
GO:0007076 mitotic chromosome condensation P
IMP
SpoSPAC1783.05
GO:0008150 biological_process P
ND
MmuMGI:2448567
GO:0008152 metabolic process P
NAS
MmuMGI:88393
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010369
GO:0016584 nucleosome positioning P
IDA
SceS000000966
GO:0030466 chromatin silencing at silent mating-type
cassette		 P
IMP
SpoSPAC1783.05
SPAC3G6.01
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPAC1783.05
GO:0035067 negative regulation of histone
acetylation		 P
IMP
SpoSPAC1783.05
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IEP
SpoSPAC3G6.01
SPAC1783.05
IMP
SceS000000966
GO:0048096 chromatin-mediated maintenance of
transcription		 P
TAS
SpoSPAC1783.05
GO:0060303 regulation of nucleosome density P
IMP
SpoSPAC3G6.01
SPAC1783.05

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC3G6.01
(O14139)		 YER164W
(S000000966)
SPAC1783.05
(Q9US25)		 YER164W
(S000000966)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000000966
GO:0000779 condensed chromosome, centromeric
region		 C
IDA
SpoSPAC1783.05
GO:0000790 nuclear chromatin C
IC
SpoSPAC1783.05
NAS
SpoSPAC3G6.01
GO:0005634 nucleus C
IDA
SpoSPAC1783.05
SPAC3G6.01
NAS
SpoSPAC3G6.01
GO:0005739 mitochondrion C
IDA
SceS000000966
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000000966
GO:0031934 mating-type region heterochromatin C
IDA
SpoSPAC3G6.01
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000000966
GO:0003677 DNA binding F
NAS
SpoSPAC3G6.01
TAS
SpoSPAC1783.05
GO:0004003 ATP-dependent DNA helicase activity F
IDA
SpoSPAC3G6.01
ISS
SpoSPAC1783.05
GO:0004386 helicase activity F
RCA
SceS000000966
GO:0005515 protein binding F
IPI
SpoSPAC1783.05
SPAC3G6.01
GO:0005524 ATP binding F
IC
SpoSPAC3G6.01
GO:0008094 DNA-dependent ATPase activity F
IDA
SpoSPAC1783.05
ISS
SpoSPAC3G6.01
RCA
SceS000000966
GO:0016887 ATPase activity F
IDA
SceS000000966
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000000966
GO:0042623 ATPase activity, coupled F
RCA
SceS000000966
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPAC3G6.01
GO:0006200 ATP catabolic process P
IDA
SpoSPAC3G6.01
ISS
SpoSPAC1783.05
GO:0006338 chromatin remodeling P
IDA
SceS000000966
IMP
SpoSPAC1783.05
NAS
SpoSPAC3G6.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000000966
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SpoSPAC1783.05
GO:0007076 mitotic chromosome condensation P
IMP
SpoSPAC1783.05
GO:0016584 nucleosome positioning P
IDA
SceS000000966
GO:0030466 chromatin silencing at silent mating-type
cassette		 P
IMP
SpoSPAC1783.05
SPAC3G6.01
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPAC1783.05
GO:0035067 negative regulation of histone
acetylation		 P
IMP
SpoSPAC1783.05
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IEP
SpoSPAC3G6.01
SPAC1783.05
IMP
SceS000000966
GO:0048096 chromatin-mediated maintenance of
transcription		 P
TAS
SpoSPAC1783.05
GO:0060303 regulation of nucleosome density P
IMP
SpoSPAC3G6.01
SPAC1783.05

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