YOGY Home YOGY Help

Search term: YER165W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PAB1
SGD link S000000967
Alternative ID YER165W
Description Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G
Synonyms YER165W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0123 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING Polyadenylate-binding protein (RRM superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g22760 GI:15219945
Arabidopsis thaliana (Ath) At1g45100 GI:15219528
Arabidopsis thaliana (Ath) At1g49760 GI:15222813
Arabidopsis thaliana (Ath) At1g71770 GI:15217573
Arabidopsis thaliana (Ath) At2g15500 GI:15226539
Arabidopsis thaliana (Ath) At2g23350 GI:15227815
Arabidopsis thaliana (Ath) At2g36660 GI:15228016
Arabidopsis thaliana (Ath) At3g16380 GI:15228191
Arabidopsis thaliana (Ath) At3g19330_1 GI:15230350
Arabidopsis thaliana (Ath) At3g19350 GI:15230352
Arabidopsis thaliana (Ath) At3g48830_2 GI:15229038
Arabidopsis thaliana (Ath) At3g48840 GI:15229039
Arabidopsis thaliana (Ath) At4g34110 GI:15235241
Arabidopsis thaliana (Ath) At5g03580 GI:15242807
Arabidopsis thaliana (Ath) At5g41690 GI:10178023
Caenorhabditis elegans (Cel) CE02193
(WBGene00003903)		 GI:17567133 Q19579
Caenorhabditis elegans (Cel) CE03230 GI:17567131 Q19579
Caenorhabditis elegans (Cel) CE20412
(WBGene00003902)		 GI:17510879
Drosophila melanogaster (Dme) 7302665
(FBgn0003031)		 GI:17136378
Homo sapiens (Hsa) Hs13569958 GI:13569958
Homo sapiens (Hsa) Hs13644124 GI:13644124
Homo sapiens (Hsa) Hs17435151 GI:17435151
Homo sapiens (Hsa) Hs17449010 GI:17449010
Homo sapiens (Hsa) Hs18201888
(PABPC5)		 GI:18201888 Q96DU9
Homo sapiens (Hsa) Hs18600888_2 GI:18600888
Homo sapiens (Hsa) Hs20472792 GI:20472792
Homo sapiens (Hsa) Hs20472797 GI:20472797
Homo sapiens (Hsa) Hs20475270 GI:20475270
Homo sapiens (Hsa) Hs20535199 GI:20535199
Homo sapiens (Hsa) Hs20559158 GI:20559158
Homo sapiens (Hsa) Hs22055266 GI:22055266
Homo sapiens (Hsa) Hs22058383 GI:22058383
Homo sapiens (Hsa) Hs22058480 GI:22058480
Homo sapiens (Hsa) Hs22067809 GI:22067809
Homo sapiens (Hsa) Hs4504715
(PABPC4)		 GI:4504715 Q15164
Homo sapiens (Hsa) Hs4505575 GI:4505575
Homo sapiens (Hsa) Hs4885511 GI:4885511
Saccharomyces cerevisiae (Sce) YER165w
(S000000967)		 GI:6321013 P04147
Saccharomyces cerevisiae (Sce) YFR023w
(S000001919)		 GI:14318545 P39684
Saccharomyces cerevisiae (Sce) YHR015w
(S000001057)		 GI:6321803 P38760
Schizosaccharomyces pombe (Spo) SPAC57A7.04c GI:19114289 P31209
Encephalitozoon cuniculi (Ecu) ECU02g0250 GI:19073946 Q8SWG0
Encephalitozoon cuniculi (Ecu) ECU07g0340 GI:19074456 Q8SRL7
Encephalitozoon cuniculi (Ecu) ECU09g1470 GI:19173268
Encephalitozoon cuniculi (Ecu) ECU10g1110 GI:19074720 Q8SR30
Arabidopsis thaliana (Ath) At1g22760 GI:15219945
Arabidopsis thaliana (Ath) At1g45100 GI:15219528
Arabidopsis thaliana (Ath) At1g49760 GI:15222813
Arabidopsis thaliana (Ath) At1g71770 GI:15217573
Arabidopsis thaliana (Ath) At2g15500 GI:15226539
Arabidopsis thaliana (Ath) At2g23350 GI:15227815
Arabidopsis thaliana (Ath) At2g36660 GI:15228016
Arabidopsis thaliana (Ath) At3g16380 GI:15228191
Arabidopsis thaliana (Ath) At3g19330_1 GI:15230350
Arabidopsis thaliana (Ath) At3g19350 GI:15230352
Arabidopsis thaliana (Ath) At3g48830_2 GI:15229038
Arabidopsis thaliana (Ath) At3g48840 GI:15229039
Arabidopsis thaliana (Ath) At4g34110 GI:15235241
Arabidopsis thaliana (Ath) At5g03580 GI:15242807
Arabidopsis thaliana (Ath) At5g41690 GI:10178023
Caenorhabditis elegans (Cel) CE02193
(WBGene00003903)		 GI:17567133 Q19579
Caenorhabditis elegans (Cel) CE03230 GI:17567131 Q19579
Caenorhabditis elegans (Cel) CE20412
(WBGene00003902)		 GI:17510879
Drosophila melanogaster (Dme) 7302665
(FBgn0003031)		 GI:17136378
Homo sapiens (Hsa) Hs13569958 GI:13569958
Homo sapiens (Hsa) Hs13644124 GI:13644124
Homo sapiens (Hsa) Hs17435151 GI:17435151
Homo sapiens (Hsa) Hs17449010 GI:17449010
Homo sapiens (Hsa) Hs18201888
(PABPC5)		 GI:18201888 Q96DU9
Homo sapiens (Hsa) Hs18600888_2 GI:18600888
Homo sapiens (Hsa) Hs20472792 GI:20472792
Homo sapiens (Hsa) Hs20472797 GI:20472797
Homo sapiens (Hsa) Hs20475270 GI:20475270
Homo sapiens (Hsa) Hs20535199 GI:20535199
Homo sapiens (Hsa) Hs20559158 GI:20559158
Homo sapiens (Hsa) Hs22055266 GI:22055266
Homo sapiens (Hsa) Hs22058383 GI:22058383
Homo sapiens (Hsa) Hs22058480 GI:22058480
Homo sapiens (Hsa) Hs22067809 GI:22067809
Homo sapiens (Hsa) Hs4504715
(PABPC4)		 GI:4504715 Q15164
Homo sapiens (Hsa) Hs4505575 GI:4505575
Homo sapiens (Hsa) Hs4885511 GI:4885511
Saccharomyces cerevisiae (Sce) YER165w
(S000000967)		 GI:6321013 P04147
Saccharomyces cerevisiae (Sce) YFR023w
(S000001919)		 GI:14318545 P39684
Saccharomyces cerevisiae (Sce) YHR015w
(S000001057)		 GI:6321803 P38760
Schizosaccharomyces pombe (Spo) SPAC57A7.04c GI:19114289 P31209
Encephalitozoon cuniculi (Ecu) ECU02g0250 GI:19073946 Q8SWG0
Encephalitozoon cuniculi (Ecu) ECU07g0340 GI:19074456 Q8SRL7
Encephalitozoon cuniculi (Ecu) ECU09g1470 GI:19173268
Encephalitozoon cuniculi (Ecu) ECU10g1110 GI:19074720 Q8SR30
Arabidopsis thaliana (Ath) At1g22760 GI:15219945
Arabidopsis thaliana (Ath) At1g45100 GI:15219528
Arabidopsis thaliana (Ath) At1g49760 GI:15222813
Arabidopsis thaliana (Ath) At1g71770 GI:15217573
Arabidopsis thaliana (Ath) At2g15500 GI:15226539
Arabidopsis thaliana (Ath) At2g23350 GI:15227815
Arabidopsis thaliana (Ath) At2g36660 GI:15228016
Arabidopsis thaliana (Ath) At3g16380 GI:15228191
Arabidopsis thaliana (Ath) At3g19330_1 GI:15230350
Arabidopsis thaliana (Ath) At3g19350 GI:15230352
Arabidopsis thaliana (Ath) At3g48830_2 GI:15229038
Arabidopsis thaliana (Ath) At3g48840 GI:15229039
Arabidopsis thaliana (Ath) At4g34110 GI:15235241
Arabidopsis thaliana (Ath) At5g03580 GI:15242807
Arabidopsis thaliana (Ath) At5g41690 GI:10178023
Caenorhabditis elegans (Cel) CE02193
(WBGene00003903)		 GI:17567133 Q19579
Caenorhabditis elegans (Cel) CE03230 GI:17567131 Q19579
Caenorhabditis elegans (Cel) CE20412
(WBGene00003902)		 GI:17510879
Drosophila melanogaster (Dme) 7302665
(FBgn0003031)		 GI:17136378
Homo sapiens (Hsa) Hs13569958 GI:13569958
Homo sapiens (Hsa) Hs13644124 GI:13644124
Homo sapiens (Hsa) Hs17435151 GI:17435151
Homo sapiens (Hsa) Hs17449010 GI:17449010
Homo sapiens (Hsa) Hs18201888
(PABPC5)		 GI:18201888 Q96DU9
Homo sapiens (Hsa) Hs18600888_2 GI:18600888
Homo sapiens (Hsa) Hs20472792 GI:20472792
Homo sapiens (Hsa) Hs20472797 GI:20472797
Homo sapiens (Hsa) Hs20475270 GI:20475270
Homo sapiens (Hsa) Hs20535199 GI:20535199
Homo sapiens (Hsa) Hs20559158 GI:20559158
Homo sapiens (Hsa) Hs22055266 GI:22055266
Homo sapiens (Hsa) Hs22058383 GI:22058383
Homo sapiens (Hsa) Hs22058480 GI:22058480
Homo sapiens (Hsa) Hs22067809 GI:22067809
Homo sapiens (Hsa) Hs4504715
(PABPC4)		 GI:4504715 Q15164
Homo sapiens (Hsa) Hs4505575 GI:4505575
Homo sapiens (Hsa) Hs4885511 GI:4885511
Saccharomyces cerevisiae (Sce) YER165w
(S000000967)		 GI:6321013 P04147
Saccharomyces cerevisiae (Sce) YFR023w
(S000001919)		 GI:14318545 P39684
Saccharomyces cerevisiae (Sce) YHR015w
(S000001057)		 GI:6321803 P38760
Schizosaccharomyces pombe (Spo) SPAC57A7.04c GI:19114289 P31209
Encephalitozoon cuniculi (Ecu) ECU02g0250 GI:19073946 Q8SWG0
Encephalitozoon cuniculi (Ecu) ECU07g0340 GI:19074456 Q8SRL7
Encephalitozoon cuniculi (Ecu) ECU09g1470 GI:19173268
Encephalitozoon cuniculi (Ecu) ECU10g1110 GI:19074720 Q8SR30


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00003902
GO:0005575 cellular_component C
ND
AthAt3g48840
At3g19350
At5g03580
At2g15500
SceS000001919
GO:0005634 nucleus C
IDA
AthAt1g71770
SceS000000967
SpoSPAC57A7.04c
GO:0005643 nuclear pore C
IPI
SceS000001057
GO:0005737 cytoplasm C
IDA
HsaPABPC4
SceS000000967
SpoSPAC57A7.04c
GO:0005829 cytosol C
IDA
AthAt1g71770
SpoSPAC57A7.04c
GO:0005840 ribosome C
IDA
SceS000000967
GO:0005886 plasma membrane C
IDA
AthAt3g19330
GO:0010494 stress granule C
IDA
SceS000000967
GO:0030529 ribonucleoprotein complex C
IDA
HsaPABPC4
GO:0043186 P granule C
IDA
CelWBGene00003902
GO:0003674 molecular_function F
ND
AthAt2g15500
At3g19330
SceS000001919
GO:0003676 nucleic acid binding F
ISS
AthAt3g48840
At5g03580
GO:0003723 RNA binding F
ISS
AthAt1g49760
At3g16380
At4g34110
At3g48830
At2g23350
At5g03580
At1g45100
At1g22760
At1g71770
At2g36660
At5g41690
SceS000001057
GO:0003729 mRNA binding F
IDA
CelWBGene00003902
GO:0003743 translation initiation factor activity F
ISS
AthAt3g16380
At2g36660
At4g34110
At1g22760
At1g71770
At1g49760
At2g23350
GO:0004652 polynucleotide adenylyltransferase
activity		 F
ISS
AthAt3g48830
GO:0005515 protein binding F
IPI
HsaPABPC4
GO:0008143 poly(A) RNA binding F
IDA
AthAt1g71770
HsaPABPC4
SceS000000967
IMP
SceS000000967
ISS
AthAt3g19350
TAS
SpoSPAC57A7.04c
GO:0008266 poly(U) RNA binding F
IDA
HsaPABPC4
GO:0000003 reproduction P
IMP
CelWBGene00003902
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IGI
AthAt1g71770
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00003902
GO:0006396 RNA processing P
ISS
AthAt3g48830
TAS
HsaPABPC4
GO:0006397 mRNA processing P
IGI
AthAt1g22760
GO:0006401 RNA catabolic process P
TAS
HsaPABPC4
GO:0006406 mRNA export from nucleus P
IMP
SpoSPAC57A7.04c
IPI
SceS000001057
GO:0006412 translation P
TAS
HsaPABPC4
GO:0006413 translational initiation P
IGI
AthAt1g71770
ISS
AthAt4g34110
TAS
AthAt3g16380
GO:0006415 translational termination P
RCA
SceS000001057
GO:0006417 regulation of translation P
RCA
SceS000000967
TAS
AthAt3g19350
GO:0006446 regulation of translational initiation P
IDA
SceS000000967
IMP
SceS000000967
ISS
SpoSPAC57A7.04c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003902
GO:0007276 gamete generation P
IMP
CelWBGene00003902
GO:0007596 blood coagulation P
TAS
HsaPABPC4
GO:0008150 biological_process P
ND
AthAt3g48840
At2g15500
At3g19330
At5g03580
SceS000001919
GO:0009651 response to salt stress P
IEP
AthAt4g34110
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003903
WBGene00003902
GO:0010171 body morphogenesis P
IMP
CelWBGene00003902
GO:0016071 mRNA metabolic process P
TAS
AthAt3g16380
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
RCA
SceS000001919
GO:0040007 growth P
IMP
CelWBGene00003902
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003902
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003902
GO:0046686 response to cadmium ion P
IEP
AthAt1g49760
At2g23350
GO:0060211 regulation of nuclear-transcribed mRNA poly(A)
tail shortening		 P
IDA
SceS000000967
IMP
SceS000000967

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
37638

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PABPC1 GI:46367787
Canis familiaris (Cfa) PABPC1 GI:73974124
Mus musculus (Mmu) Pabpc1
(MGI:1349722)		 GI:31560656 P29341
Rattus norvegicus (Rno) Pabpc1
(RGD:619838)		 GI:19705459
Gallus gallus (Gga) RCJMB04_7l20 GI:71896197
Schizosaccharomyces pombe (Spo) pabp
(SPAC57A7.04c)		 GI:19114289 P31209
Saccharomyces cerevisiae (Sce) PAB1
(S000000967)		 GI:6321013 P04147
Kluyveromyces lactis (Kla) KLLA0C17600g GI:50306049
Eremothecium gossypii (Ego) AGOS_AGR122C GI:45201218
Magnaporthe grisea (Mgr) MGG_09505 GI:39961142
Neurospora crassa (Ncr) NCU04799.1 GI:32407122
Arabidopsis thaliana (Ath) PAB8 GI:18402769
Oryza sativa (Osa) Os08g0314800 GI:115475838
Oryza sativa (Osa) Os04g0504800 GI:115459296
Oryza sativa (Osa) Os09g0115400 GI:115477976
Plasmodium falciparum (Pfa) PFL1170w GI:124806145


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
PfaPFL1170w
GO:0005634 nucleus C
IDA
SceS000000967
SpoSPAC57A7.04c
GO:0005737 cytoplasm C
IDA
SceS000000967
SpoSPAC57A7.04c
TAS
HsaPABPC1
GO:0005829 cytosol C
EXP
HsaPABPC1
IDA
SpoSPAC57A7.04c
GO:0005840 ribosome C
IDA
SceS000000967
GO:0010494 stress granule C
IDA
SceS000000967
GO:0030529 ribonucleoprotein complex C
IDA
HsaPABPC1
GO:0003723 RNA binding F
ISS
AthPAB8
GO:0003729 mRNA binding F
ISO
MmuMGI:1349722
ISS
PfaPFL1170w
GO:0003743 translation initiation factor activity F
ISS
AthPAB8
GO:0005515 protein binding F
IPI
HsaPABPC1
GO:0008022 protein C-terminus binding F
IPI
HsaPABPC1
GO:0008143 poly(A) RNA binding F
IDA
HsaPABPC1
SceS000000967
IMP
SceS000000967
ISO
MmuMGI:1349722
ISS
PfaPFL1170w
TAS
HsaPABPC1
SpoSPAC57A7.04c
GO:0008494 translation activator activity F
TAS
HsaPABPC1
GO:0006378 mRNA polyadenylation P
TAS
HsaPABPC1
GO:0006396 RNA processing P
ISS
PfaPFL1170w
GO:0006406 mRNA export from nucleus P
IMP
SpoSPAC57A7.04c
GO:0006417 regulation of translation P
RCA
SceS000000967
GO:0006446 regulation of translational initiation P
IDA
SceS000000967
IMP
SceS000000967
ISS
SpoSPAC57A7.04c
GO:0046686 response to cadmium ion P
IEP
AthPAB8
GO:0048255 mRNA stabilization P
TAS
HsaPABPC1
GO:0060211 regulation of nuclear-transcribed mRNA poly(A)
tail shortening		 P
IDA
SceS000000967
IMP
SceS000000967

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_238

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8101 ENSANGP00000022280
Anopheles gambiae (Aga) aga8102 ENSANGP00000026584
Ashbya gossypii (Ago) ago4433 AGR122C
Arabidopsis thaliana (Ath) ath2444 At1g22760.1
Arabidopsis thaliana (Ath) ath4249 At1g49760.1
Arabidopsis thaliana (Ath) ath6458 At1g71770.1
Arabidopsis thaliana (Ath) ath9245 At2g23350.1
Arabidopsis thaliana (Ath) ath10736 At2g36660.1
Caenorhabditis elegans (Cel) cel6697 F18H3.3a
(CE02193;
WBGene00003903)
Caenorhabditis elegans (Cel) cel6698 F18H3.3b
(CE03230)
Caenorhabditis elegans (Cel) cel17568 Y106G6H.2a
(CE20412;
WBGene00003902)
Caenorhabditis elegans (Cel) cel17569 Y106G6H.2b
(CE36227)
Caenorhabditis elegans (Cel) cel17570 Y106G6H.2c
(CE36228)
Candida glabrata (Cgl) cgl4588 CAGL0L11792g
Cryptococcus neoformans (Cne) cne219 162.m02667
Dictyostelium discoideum (Ddi) ddi11122 DDB0192007
Debaryomyces hansenii (Dha) dha6291 DEHA0G13255g
Drosophila melanogaster (Dme) dme5791 CG5119-PA
(FBgn0003031)
Drosophila melanogaster (Dme) dme5793 CG5119-PB
(FBgn0003031)
Drosophila melanogaster (Dme) dme5788 CG5119-PC
(FBgn0003031)
Drosophila melanogaster (Dme) dme5794 CG5119-PD
(FBgn0003031)
Drosophila melanogaster (Dme) dme5789 CG5119-PE
(FBgn0003031)
Drosophila melanogaster (Dme) dme5792 CG5119-PF
(FBgn0003031)
Drosophila melanogaster (Dme) dme5795 CG5119-PG
(FBgn0003031)
Drosophila melanogaster (Dme) dme5790 CG5119-PH
(FBgn0003031)
Danio rerio (Dre) dre26134 ENSDARP00000011650
Danio rerio (Dre) dre31845 ENSDARP00000015866
(zgc:55855)		 Q6TGY6
Danio rerio (Dre) dre7716 ENSDARP00000021064
(pabpc1a)		 Q499B6
Danio rerio (Dre) dre31844 ENSDARP00000040286
(zgc:55855)		 Q6TGY6
Encephalitozoon cuniculi (Ecu) ecu636 19074720
Takifugu rubripes (Fru) fru29084 SINFRUP00000127626
Takifugu rubripes (Fru) fru12269 SINFRUP00000133710
Takifugu rubripes (Fru) fru12268 SINFRUP00000133711
Takifugu rubripes (Fru) fru8873 SINFRUP00000136945
Takifugu rubripes (Fru) fru9351 SINFRUP00000147841
Takifugu rubripes (Fru) fru29085 SINFRUP00000168626
Takifugu rubripes (Fru) fru9352 SINFRUP00000169545
Gallus gallus (Gga) gga13021 ENSGALP00000006017
Gallus gallus (Gga) gga13019 ENSGALP00000006018
(PABPC4)
Gallus gallus (Gga) gga13022 ENSGALP00000006020
Gallus gallus (Gga) gga11867 ENSGALP00000006555
(PABPC1L)
Gallus gallus (Gga) gga27223 ENSGALP00000023287
Gallus gallus (Gga) gga27224 ENSGALP00000023288
(RCJMB04_7l20)		 Q5ZL53
Homo sapiens (Hsa) hsa30589 ENSP00000174661
(PABPC1)		 P11940-2
Homo sapiens (Hsa) hsa8585 ENSP00000281589
(PABPC3)		 Q9H361
Homo sapiens (Hsa) hsa30588 ENSP00000313007
(PABPC1)		 P11940-1
Homo sapiens (Hsa) hsa30587 ENSP00000350613
Kluyveromyces lactis (Kla) kla1985 KLLA0C17600g
Mus musculus (Mmu) mmu8896 ENSMUSP00000001809
(MGI:1349722)		 Q05DT1
Mus musculus (Mmu) mmu17835 ENSMUSP00000054095
Mus musculus (Mmu) mmu17836 ENSMUSP00000075872
Mus musculus (Mmu) mmu17837 ENSMUSP00000077084
Mus musculus (Mmu) mmu18839 ENSMUSP00000077794
(MGI:2385206)		 Q91YZ8
Mus musculus (Mmu) mmu18838 ENSMUSP00000079070
(MGI:2385206)		 Q3TSA5
Mus musculus (Mmu) mmu8572 ENSMUSP00000079967
Neurospora crassa (Ncr) ncr4660 NCU04799.2
Oryza sativa (Osa) osa17219 3114.m00129
Oryza sativa (Osa) osa27269 3978.m00202
Oryza sativa (Osa) osa48772 5676.m00102
Oryza sativa (Osa) osa58095 6252.m00127
Oryza sativa (Osa) osa82045 8174.m00122
Oryza sativa (Osa) osa85714 8336.m00158
Oryza sativa (Osa) osa85719 8336.m00195
Plasmodium falciparum (Pfa) pfa5017 PFL1170w
Rattus norvegicus (Rno) rno26971 ENSRNOP00000012775
(RGD:619838)		 Q9EPH8
Rattus norvegicus (Rno) rno23878 ENSRNOP00000021032
(RGD:1305015)
Rattus norvegicus (Rno) rno23879 ENSRNOP00000021045
(RGD:1305015)		 B2GUY3
Saccharomyces cerevisiae (Sce) sce1914 YER165W
(S000000967)
Schizosaccharomyces pombe (Spo) spo1854 SPAC57A7.04c P31209
Yarrowia lipolytica (Yli) yli1744 YALI0C00539g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00003902
GO:0005575 cellular_component C
ND
PfaPFL1170w
GO:0005634 nucleus C
IDA
AthAt1g71770
SceS000000967
SpoSPAC57A7.04c
GO:0005737 cytoplasm C
IDA
SceS000000967
SpoSPAC57A7.04c
ISO
MmuMGI:2385206
GO:0005829 cytosol C
IDA
AthAt1g71770
SpoSPAC57A7.04c
GO:0005840 ribosome C
IDA
SceS000000967
GO:0010494 stress granule C
IDA
SceS000000967
GO:0043186 P granule C
IDA
CelWBGene00003902
GO:0003723 RNA binding F
ISS
AthAt1g49760
At2g23350
At1g22760
At1g71770
At2g36660
GO:0003729 mRNA binding F
IDA
CelWBGene00003902
ISO
MmuMGI:1349722
ISS
PfaPFL1170w
GO:0003743 translation initiation factor activity F
ISS
AthAt2g36660
At1g22760
At1g71770
At1g49760
At2g23350
GO:0008143 poly(A) RNA binding F
IDA
AthAt1g71770
SceS000000967
IMP
SceS000000967
ISO
MmuMGI:1349722
MGI:2385206
ISS
PfaPFL1170w
TAS
SpoSPAC57A7.04c
GO:0008266 poly(U) RNA binding F
ISO
MmuMGI:2385206
GO:0000003 reproduction P
IMP
CelWBGene00003902
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IGI
AthAt1g71770
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00003902
GO:0006396 RNA processing P
ISS
PfaPFL1170w
GO:0006397 mRNA processing P
IGI
AthAt1g22760
GO:0006406 mRNA export from nucleus P
IMP
SpoSPAC57A7.04c
GO:0006413 translational initiation P
IGI
AthAt1g71770
GO:0006417 regulation of translation P
RCA
SceS000000967
GO:0006446 regulation of translational initiation P
IDA
SceS000000967
IMP
SceS000000967
ISS
SpoSPAC57A7.04c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003902
GO:0007276 gamete generation P
IMP
CelWBGene00003902
GO:0008150 biological_process P
ND
MmuMGI:2385206
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003903
WBGene00003902
GO:0010171 body morphogenesis P
IMP
CelWBGene00003902
GO:0040007 growth P
IMP
CelWBGene00003902
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003902
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003902
GO:0046686 response to cadmium ion P
IEP
AthAt1g49760
At2g23350
GO:0060211 regulation of nuclear-transcribed mRNA poly(A)
tail shortening		 P
IDA
SceS000000967
IMP
SceS000000967

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC57A7.04c
(P31209)		 YER165W
(S000000967)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000967
SpoSPAC57A7.04c
GO:0005737 cytoplasm C
IDA
SceS000000967
SpoSPAC57A7.04c
GO:0005829 cytosol C
IDA
SpoSPAC57A7.04c
GO:0005840 ribosome C
IDA
SceS000000967
GO:0010494 stress granule C
IDA
SceS000000967
GO:0008143 poly(A) RNA binding F
IDA
SceS000000967
IMP
SceS000000967
TAS
SpoSPAC57A7.04c
GO:0006406 mRNA export from nucleus P
IMP
SpoSPAC57A7.04c
GO:0006417 regulation of translation P
RCA
SceS000000967
GO:0006446 regulation of translational initiation P
IDA
SceS000000967
IMP
SceS000000967
ISS
SpoSPAC57A7.04c
GO:0060211 regulation of nuclear-transcribed mRNA poly(A)
tail shortening		 P
IDA
SceS000000967
IMP
SceS000000967

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk