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Search term: YFL002C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SPB4
SGD link S000001894
Alternative ID YFL002C
Description Putative ATP-dependent RNA helicase, nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients
Synonyms YFL002C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0345 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g71280 GI:15224011
Arabidopsis thaliana (Ath) At1g71370 GI:15217442
Arabidopsis thaliana (Ath) At5g05450 GI:15239115
Caenorhabditis elegans (Cel) CE03821
(WBGene00013983)		 GI:17556951 P34640
Drosophila melanogaster (Dme) 7299006 GI:7299006
Homo sapiens (Hsa) Hs17474221 GI:17474221
Homo sapiens (Hsa) Hs20551983 GI:20551983
Saccharomyces cerevisiae (Sce) YFL002c
(S000001894)		 GI:14318521 P25808
Schizosaccharomyces pombe (Spo) SPBC24C6.02 GI:19112748 O74764
Encephalitozoon cuniculi (Ecu) ECU10g0690 GI:19074678 Q8SR49
Arabidopsis thaliana (Ath) At1g71280 GI:15224011
Arabidopsis thaliana (Ath) At1g71370 GI:15217442
Arabidopsis thaliana (Ath) At5g05450 GI:15239115
Caenorhabditis elegans (Cel) CE03821
(WBGene00013983)		 GI:17556951 P34640
Drosophila melanogaster (Dme) 7299006 GI:7299006
Homo sapiens (Hsa) Hs17474221 GI:17474221
Homo sapiens (Hsa) Hs20551983 GI:20551983
Saccharomyces cerevisiae (Sce) YFL002c
(S000001894)		 GI:14318521 P25808
Schizosaccharomyces pombe (Spo) SPBC24C6.02 GI:19112748 O74764
Encephalitozoon cuniculi (Ecu) ECU10g0690 GI:19074678 Q8SR49
Arabidopsis thaliana (Ath) At1g71280 GI:15224011
Arabidopsis thaliana (Ath) At1g71370 GI:15217442
Arabidopsis thaliana (Ath) At5g05450 GI:15239115
Caenorhabditis elegans (Cel) CE03821
(WBGene00013983)		 GI:17556951 P34640
Drosophila melanogaster (Dme) 7299006 GI:7299006
Homo sapiens (Hsa) Hs17474221 GI:17474221
Homo sapiens (Hsa) Hs20551983 GI:20551983
Saccharomyces cerevisiae (Sce) YFL002c
(S000001894)		 GI:14318521 P25808
Schizosaccharomyces pombe (Spo) SPBC24C6.02 GI:19112748 O74764
Encephalitozoon cuniculi (Ecu) ECU10g0690 GI:19074678 Q8SR49


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g05450
At1g71370
GO:0005730 nucleolus C
IDA
SpoSPBC24C6.02
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g05450
At1g71370
At1g71280
GO:0008266 poly(U) RNA binding F
IDA
AthAt1g71280
GO:0000003 reproduction P
IMP
CelWBGene00013983
GO:0000027 ribosomal large subunit assembly P
TAS
SceS000001894
GO:0002119 nematode larval development P
IMP
CelWBGene00013983
GO:0006364 rRNA processing P
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0008150 biological_process P
ND
AthAt5g05450
At1g71370
GO:0040007 growth P
IMP
CelWBGene00013983
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013983
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC24C6.02

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
12196

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX55 GI:41327779
Pan troglodytes (Ptr) DDX55 GI:114647685
Canis familiaris (Cfa) DDX55 GI:73994422
Mus musculus (Mmu) Ddx55
(MGI:1915098)		 GI:117647283 Q6ZPL9
Gallus gallus (Gga) DDX55 GI:57525164
Drosophila melanogaster (Dme) CG9630
(FBgn0037561)		 GI:21355559
Anopheles gambiae (Aga) AgaP_AGAP001223 GI:158302381
Schizosaccharomyces pombe (Spo) SPBC24C6.02 GI:19112748 O74764
Saccharomyces cerevisiae (Sce) SPB4
(S000001894)		 GI:14318521 P25808
Kluyveromyces lactis (Kla) KLLA0E14410g GI:50309183
Eremothecium gossypii (Ego) AGOS_AGL004C GI:45201092
Magnaporthe grisea (Mgr) MGG_02417 GI:145606282
Neurospora crassa (Ncr) NCU03380.1 GI:32404050
Arabidopsis thaliana (Ath) AT5G05450 GI:15239115
Arabidopsis thaliana (Ath) AT1G71280 GI:15224011
Arabidopsis thaliana (Ath) AT1G71370 GI:15217442
Oryza sativa (Osa) Os01g0164500 GI:115434688


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g05450
At1g71370
DmeFBgn0037561
MmuMGI:1915098
GO:0005730 nucleolus C
IDA
SpoSPBC24C6.02
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0003674 molecular_function F
ND
MmuMGI:1915098
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0037561
SpoSPBC24C6.02
TAS
SceS000001894
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g05450
At1g71370
At1g71280
GO:0008266 poly(U) RNA binding F
IDA
AthAt1g71280
GO:0000027 ribosomal large subunit assembly P
TAS
SceS000001894
GO:0006364 rRNA processing P
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0008150 biological_process P
ND
AthAt5g05450
At1g71370
DmeFBgn0037561
MmuMGI:1915098
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC24C6.02

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1635

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3297 ENSANGP00000009871
Ashbya gossypii (Ago) ago4307 AGL004C
Arabidopsis thaliana (Ath) ath6415 At1g71280.1
Arabidopsis thaliana (Ath) ath6426 At1g71370.1
Arabidopsis thaliana (Ath) ath22723 At5g05450.1
Caenorhabditis elegans (Cel) cel21951 ZK512.2
(CE03821;
WBGene00013983)
Candida glabrata (Cgl) cgl4470 CAGL0L08976g
Dictyostelium discoideum (Ddi) ddi10258 DDB0183998
Debaryomyces hansenii (Dha) dha2670 DEHA0D08470g
Drosophila melanogaster (Dme) dme11483 CG9630-PA
(FBgn0037561)
Danio rerio (Dre) dre24150 ENSDARP00000020323
(ddx55)		 Q8JHJ2
Encephalitozoon cuniculi (Ecu) ecu594 19074678
Takifugu rubripes (Fru) fru29315 SINFRUP00000136408
Gallus gallus (Gga) gga7161 ENSGALP00000005213
Gallus gallus (Gga) gga7162 ENSGALP00000005214
Gallus gallus (Gga) gga7160 ENSGALP00000005215
(DDX55)		 Q5ZLN8
Homo sapiens (Hsa) hsa8416 ENSP00000238146
(DDX55)		 Q8NHQ9
Homo sapiens (Hsa) hsa8417 ENSP00000346244
(DDX55)		 B4DVE4
Kluyveromyces lactis (Kla) kla3596 KLLA0E14410g
Mus musculus (Mmu) mmu20952 ENSMUSP00000031335
Mus musculus (Mmu) mmu20953 ENSMUSP00000070279
(MGI:1915098)		 Q6ZPL9
Neurospora crassa (Ncr) ncr3277 NCU03380.2
Oryza sativa (Osa) osa12436 2841.m00156
Oryza sativa (Osa) osa39517 4992.m00115
Plasmodium falciparum (Pfa) pfa1548 PF14_0185
Rattus norvegicus (Rno) rno8518 ENSRNOP00000001387
Rattus norvegicus (Rno) rno8519 ENSRNOP00000029725
Saccharomyces cerevisiae (Sce) sce1948 YFL002C
(S000001894)
Schizosaccharomyces pombe (Spo) spo2700 SPBC24C6.02 O74764
Yarrowia lipolytica (Yli) yli6107 YALI0F18238g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g05450
At1g71370
DmeFBgn0037561
MmuMGI:1915098
PfaPF14_0185
GO:0005730 nucleolus C
IDA
SpoSPBC24C6.02
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0003674 molecular_function F
ND
MmuMGI:1915098
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0037561
PfaPF14_0185
SpoSPBC24C6.02
TAS
SceS000001894
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g05450
At1g71370
At1g71280
GO:0008266 poly(U) RNA binding F
IDA
AthAt1g71280
GO:0000003 reproduction P
IMP
CelWBGene00013983
GO:0000027 ribosomal large subunit assembly P
TAS
SceS000001894
GO:0002119 nematode larval development P
IMP
CelWBGene00013983
GO:0006364 rRNA processing P
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0008150 biological_process P
ND
AthAt5g05450
At1g71370
DmeFBgn0037561
MmuMGI:1915098
PfaPF14_0185
GO:0040007 growth P
IMP
CelWBGene00013983
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013983
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC24C6.02

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC24C6.02
(O74764)		 YFL002C
(S000001894)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SpoSPBC24C6.02
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0000027 ribosomal large subunit assembly P
TAS
SceS000001894
GO:0006364 rRNA processing P
ISS
SpoSPBC24C6.02
TAS
SceS000001894
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC24C6.02

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GO info in one table:

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