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Search term: YFL028C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CAF16
SGD link S000001866
Alternative ID YFL028C
Description Part of evolutionarily-conserved CCR4-NOT regulatory complex; contains single ABC-type ATPase domain but no transmembrane domain; interacts with several subunits of Mediator
Synonyms YFL028C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2355 A---YP-

KOGs classification KOGs description
POORLY CHARACTERIZEDINFORMATION STORAGE AND PROCESSING Predicted ABC-type transport, ATPase component/CCR4 associated factor

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g03900_2 GI:15219587
Arabidopsis thaliana (Ath) At5g02270 GI:15241744
Arabidopsis thaliana (Ath) At5g44110 GI:15240093
Saccharomyces cerevisiae (Sce) YFL028c
(S000001866)		 GI:14318491 P43569
Schizosaccharomyces pombe (Spo) SPAC20G4.01 GI:19115648 Q7Z991


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC20G4.01
GO:0005737 cytoplasm C
IDA
SceS000001866
GO:0005829 cytosol C
IDA
SpoSPAC20G4.01
GO:0030014 CCR4-NOT complex C
IDA
SceS000001866
ISS
SpoSPAC20G4.01
GO:0030015 CCR4-NOT core complex C
NAS
SpoSPAC20G4.01
GO:0005215 transporter activity F
ISS
AthAt5g44110
At5g02270
At1g03900
GO:0005524 ATP binding F
ISS
SpoSPAC20G4.01
GO:0016887 ATPase activity F
ISS
SceS000001866
SpoSPAC20G4.01
GO:0042626 ATPase activity, coupled to transmembrane movement
of substances		 F
ISS
AthAt1g03900
GO:0006082 organic acid metabolic process P
RCA
SceS000001866
GO:0006200 ATP catabolic process P
ISS
SpoSPAC20G4.01
GO:0006354 RNA elongation P
IC
SpoSPAC20G4.01
GO:0006355 regulation of transcription, DNA-dependent P
ISS
SpoSPAC20G4.01
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IMP
SceS000001866
IPI
SceS000001866
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006402 mRNA catabolic process P
IC
SpoSPAC20G4.01
GO:0006519 cellular amino acid and derivative metabolic
process		 P
RCA
SceS000001866
GO:0006725 cellular aromatic compound metabolic
process		 P
RCA
SceS000001866
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000001866
GO:0006858 extracellular transport P
ISS
AthAt1g03900
GO:0010114 response to red light P
IEP
AthAt5g44110
GO:0010218 response to far red light P
IEP
AthAt5g44110

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
32808

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC20G4.01 GI:63054651 Q7Z991
Saccharomyces cerevisiae (Sce) CAF16
(S000001866)		 GI:14318491 P43569
Kluyveromyces lactis (Kla) KLLA0F08833g GI:50310917
Eremothecium gossypii (Ego) AGOS_AFR152C GI:45198670
Magnaporthe grisea (Mgr) MGG_09520 GI:39961344
Neurospora crassa (Ncr) NCU04097.1 GI:32405648
Arabidopsis thaliana (Ath) ATNAP9 GI:15241744
Oryza sativa (Osa) Os03g0316900 GI:115452679


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC20G4.01
GO:0005737 cytoplasm C
IDA
SceS000001866
GO:0005829 cytosol C
IDA
SpoSPAC20G4.01
GO:0030014 CCR4-NOT complex C
IDA
SceS000001866
ISS
SpoSPAC20G4.01
GO:0030015 CCR4-NOT core complex C
NAS
SpoSPAC20G4.01
GO:0005215 transporter activity F
ISS
AthATNAP9
GO:0005524 ATP binding F
ISS
SpoSPAC20G4.01
GO:0016887 ATPase activity F
ISS
SceS000001866
SpoSPAC20G4.01
GO:0006082 organic acid metabolic process P
RCA
SceS000001866
GO:0006200 ATP catabolic process P
ISS
SpoSPAC20G4.01
GO:0006354 RNA elongation P
IC
SpoSPAC20G4.01
GO:0006355 regulation of transcription, DNA-dependent P
ISS
SpoSPAC20G4.01
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IMP
SceS000001866
IPI
SceS000001866
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006402 mRNA catabolic process P
IC
SpoSPAC20G4.01
GO:0006519 cellular amino acid and derivative metabolic
process		 P
RCA
SceS000001866
GO:0006725 cellular aromatic compound metabolic
process		 P
RCA
SceS000001866
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000001866

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_4755

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3344 AFR152C
Arabidopsis thaliana (Ath) ath332 At1g03905.1
Arabidopsis thaliana (Ath) ath22372 At5g02270.1
Arabidopsis thaliana (Ath) ath26234 At5g44110.1
Candida glabrata (Cgl) cgl4055 CAGL0K12474g
Cryptococcus neoformans (Cne) cne3350 167.m05827
Debaryomyces hansenii (Dha) dha5009 DEHA0F14069g
Kluyveromyces lactis (Kla) kla4481 KLLA0F08833g
Neurospora crassa (Ncr) ncr3973 NCU04097.2
Oryza sativa (Osa) osa6969 2489.m00068
Oryza sativa (Osa) osa72731 7230.m00135
Plasmodium falciparum (Pfa) pfa1772 PF14_0321
Saccharomyces cerevisiae (Sce) sce1981 YFL028C
(S000001866)
Schizosaccharomyces pombe (Spo) spo4149 SPAC20G4.01 Q7Z991
Yarrowia lipolytica (Yli) yli3577 YALI0D20856g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC20G4.01
GO:0005737 cytoplasm C
IDA
SceS000001866
GO:0005829 cytosol C
IDA
SpoSPAC20G4.01
GO:0016020 membrane C
ISS
PfaPF14_0321
GO:0030014 CCR4-NOT complex C
IDA
SceS000001866
ISS
SpoSPAC20G4.01
GO:0030015 CCR4-NOT core complex C
NAS
SpoSPAC20G4.01
GO:0005215 transporter activity F
ISS
AthAt5g44110
At5g02270
GO:0005524 ATP binding F
ISS
SpoSPAC20G4.01
GO:0016887 ATPase activity F
ISS
SceS000001866
SpoSPAC20G4.01
GO:0042626 ATPase activity, coupled to transmembrane movement
of substances		 F
ISS
PfaPF14_0321
GO:0006082 organic acid metabolic process P
RCA
SceS000001866
GO:0006200 ATP catabolic process P
ISS
SpoSPAC20G4.01
GO:0006354 RNA elongation P
IC
SpoSPAC20G4.01
GO:0006355 regulation of transcription, DNA-dependent P
ISS
SpoSPAC20G4.01
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IMP
SceS000001866
IPI
SceS000001866
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006402 mRNA catabolic process P
IC
SpoSPAC20G4.01
GO:0006519 cellular amino acid and derivative metabolic
process		 P
RCA
SceS000001866
GO:0006725 cellular aromatic compound metabolic
process		 P
RCA
SceS000001866
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000001866
GO:0006810 transport P
ISS
PfaPF14_0321
GO:0010114 response to red light P
IEP
AthAt5g44110
GO:0010218 response to far red light P
IEP
AthAt5g44110

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC20G4.01
(Q7Z991)		 YFL028C
(S000001866)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC20G4.01
GO:0005737 cytoplasm C
IDA
SceS000001866
GO:0005829 cytosol C
IDA
SpoSPAC20G4.01
GO:0030014 CCR4-NOT complex C
IDA
SceS000001866
ISS
SpoSPAC20G4.01
GO:0030015 CCR4-NOT core complex C
NAS
SpoSPAC20G4.01
GO:0005524 ATP binding F
ISS
SpoSPAC20G4.01
GO:0016887 ATPase activity F
ISS
SceS000001866
SpoSPAC20G4.01
GO:0006082 organic acid metabolic process P
RCA
SceS000001866
GO:0006200 ATP catabolic process P
ISS
SpoSPAC20G4.01
GO:0006354 RNA elongation P
IC
SpoSPAC20G4.01
GO:0006355 regulation of transcription, DNA-dependent P
ISS
SpoSPAC20G4.01
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IMP
SceS000001866
IPI
SceS000001866
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IC
SpoSPAC20G4.01
GO:0006402 mRNA catabolic process P
IC
SpoSPAC20G4.01
GO:0006519 cellular amino acid and derivative metabolic
process		 P
RCA
SceS000001866
GO:0006725 cellular aromatic compound metabolic
process		 P
RCA
SceS000001866
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000001866

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Search for GO info:  

GO info in one table:

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