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Search term: YFL036W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPO41
SGD link S000001858
Alternative ID YFL036W
Description Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition
Synonyms YFL036W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1038 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g68990 GI:15221580
Arabidopsis thaliana (Ath) At2g24120 GI:15224093
Arabidopsis thaliana (Ath) At5g15700 GI:15242369
Caenorhabditis elegans (Cel) CE25704 GI:17510751
Drosophila melanogaster (Dme) 7296127
(FBgn0031300)		 GI:20129143
Homo sapiens (Hsa) Hs14790138 GI:14790138
Saccharomyces cerevisiae (Sce) YFL036w
(S000001858)		 GI:14318482 P13433
Schizosaccharomyces pombe (Spo) SPAC26H5.12 GI:19115371 O13993
Arabidopsis thaliana (Ath) At1g68990 GI:15221580
Arabidopsis thaliana (Ath) At2g24120 GI:15224093
Arabidopsis thaliana (Ath) At5g15700 GI:15242369
Caenorhabditis elegans (Cel) CE25704 GI:17510751
Drosophila melanogaster (Dme) 7296127
(FBgn0031300)		 GI:20129143
Homo sapiens (Hsa) Hs14790138 GI:14790138
Saccharomyces cerevisiae (Sce) YFL036w
(S000001858)		 GI:14318482 P13433
Schizosaccharomyces pombe (Spo) SPAC26H5.12 GI:19115371 O13993


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPAC26H5.12
GO:0005739 mitochondrion C
IDA
AthAt2g24120
SceS000001858
TAS
AthAt5g15700
GO:0005759 mitochondrial matrix C
IDA
SceS000001858
ISS
SpoSPAC26H5.12
GO:0005829 cytosol C
IDA
SpoSPAC26H5.12
GO:0009507 chloroplast C
TAS
AthAt5g15700
GO:0034245 mitochondrial DNA-directed RNA polymerase
complex		 C
IDA
SceS000001858
GO:0042645 mitochondrial nucleoid C
IDA
SceS000001858
GO:0042651 thylakoid membrane C
TAS
AthAt5g15700
GO:0003677 DNA binding F
ISS
AthAt5g15700
At2g24120
At1g68990
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001858
ISS
AthAt5g15700
At2g24120
At1g68990
SpoSPAC26H5.12
GO:0005515 protein binding F
IPI
AthAt2g24120
GO:0034062 RNA polymerase activity F
TAS
AthAt5g15700
GO:0000002 mitochondrial genome maintenance P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0006350 transcription P
ISS
AthAt2g24120
At1g68990
GO:0006390 transcription from mitochondrial
promoter		 P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0009060 aerobic respiration P
IMP
SceS000001858
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt1g68990
GO:0009860 pollen tube growth P
IMP
AthAt1g68990
GO:0048481 ovule development P
IMP
AthAt1g68990

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
41914

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) rpo41
(SPAC26H5.12)		 GI:19115371 O13993
Saccharomyces cerevisiae (Sce) RPO41
(S000001858)		 GI:14318482 P13433
Kluyveromyces lactis (Kla) KLLA0D05247g GI:50306641
Eremothecium gossypii (Ego) AGOS_ACR224C GI:45185910
Magnaporthe grisea (Mgr) MGG_14133 GI:145601305
Neurospora crassa (Ncr) NCU06308.1 GI:32411365
Arabidopsis thaliana (Ath) AT5G15700 GI:15242369
Oryza sativa (Osa) Os09g0246200 GI:115478128


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPAC26H5.12
GO:0005739 mitochondrion C
IDA
SceS000001858
TAS
AthAt5g15700
GO:0005759 mitochondrial matrix C
IDA
SceS000001858
ISS
SpoSPAC26H5.12
GO:0005829 cytosol C
IDA
SpoSPAC26H5.12
GO:0009507 chloroplast C
TAS
AthAt5g15700
GO:0034245 mitochondrial DNA-directed RNA polymerase
complex		 C
IDA
SceS000001858
GO:0042645 mitochondrial nucleoid C
IDA
SceS000001858
GO:0042651 thylakoid membrane C
TAS
AthAt5g15700
GO:0003677 DNA binding F
ISS
AthAt5g15700
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001858
ISS
AthAt5g15700
SpoSPAC26H5.12
GO:0034062 RNA polymerase activity F
TAS
AthAt5g15700
GO:0000002 mitochondrial genome maintenance P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0006390 transcription from mitochondrial
promoter		 P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0009060 aerobic respiration P
IMP
SceS000001858

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1499

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9685 ENSANGP00000010008
Ashbya gossypii (Ago) ago1271 ACR224C
Arabidopsis thaliana (Ath) ath6156 At1g68990.1
Arabidopsis thaliana (Ath) ath9323 At2g24120.1
Arabidopsis thaliana (Ath) ath9324 At2g24120.2
Arabidopsis thaliana (Ath) ath23784 At5g15700.1
Caenorhabditis elegans (Cel) cel17504 Y105E8A.23
(CE41276;
WBGene00013680)
Candida glabrata (Cgl) cgl4062 CAGL0K12628g
Cryptococcus neoformans (Cne) cne920 163.m06353
Cryptococcus neoformans (Cne) cne921 163.m06544
Dictyostelium discoideum (Ddi) ddi11414 DDB0191106
Debaryomyces hansenii (Dha) dha2729 DEHA0D09790g
Drosophila melanogaster (Dme) dme189 CG4644-PA
(FBgn0031300)
Danio rerio (Dre) dre14614 ENSDARP00000039242
Danio rerio (Dre) dre14615 ENSDARP00000045857
Takifugu rubripes (Fru) fru6440 SINFRUP00000127542
Takifugu rubripes (Fru) fru6442 SINFRUP00000168289
Takifugu rubripes (Fru) fru6439 SINFRUP00000176304
Takifugu rubripes (Fru) fru6441 SINFRUP00000176688
Gallus gallus (Gga) gga14071 ENSGALP00000002096
(POLRMT)
Gallus gallus (Gga) gga14072 ENSGALP00000002097
Homo sapiens (Hsa) hsa15160 ENSP00000215591
(POLRMT)		 O00411
Kluyveromyces lactis (Kla) kla2293 KLLA0D05247g
Mus musculus (Mmu) mmu2459 ENSMUSP00000020580
(MGI:1915843)		 Q8BKF1
Neurospora crassa (Ncr) ncr6131 NCU06308.2
Oryza sativa (Osa) osa40806 5100.m00161
Oryza sativa (Osa) osa48090 5657.m00161
Oryza sativa (Osa) osa53532 5963.m00155
Plasmodium falciparum (Pfa) pfa715 PF11_0264
Rattus norvegicus (Rno) rno26323 ENSRNOP00000032448
(RGD:1304599)
Saccharomyces cerevisiae (Sce) sce1991 YFL036W
(S000001858)
Schizosaccharomyces pombe (Spo) spo91 SPAC26H5.12 O13993
Yarrowia lipolytica (Yli) yli405 YALI0A12001g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPAC26H5.12
GO:0005739 mitochondrion C
IDA
AthAt2g24120
MmuMGI:1915843
SceS000001858
ISS
PfaPF11_0264
TAS
AthAt5g15700
GO:0005759 mitochondrial matrix C
IDA
SceS000001858
ISS
SpoSPAC26H5.12
GO:0005829 cytosol C
IDA
SpoSPAC26H5.12
GO:0009507 chloroplast C
TAS
AthAt5g15700
GO:0034245 mitochondrial DNA-directed RNA polymerase
complex		 C
IDA
SceS000001858
GO:0042645 mitochondrial nucleoid C
IDA
SceS000001858
GO:0042651 thylakoid membrane C
TAS
AthAt5g15700
GO:0003674 molecular_function F
ND
MmuMGI:1915843
GO:0003677 DNA binding F
ISS
AthAt5g15700
At2g24120
At1g68990
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001858
ISS
AthAt5g15700
At2g24120
At1g68990
SpoSPAC26H5.12
GO:0005515 protein binding F
IPI
AthAt2g24120
GO:0034062 RNA polymerase activity F
TAS
AthAt5g15700
GO:0000002 mitochondrial genome maintenance P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0000003 reproduction P
IMP
CelWBGene00013680
GO:0006350 transcription P
ISS
AthAt2g24120
At1g68990
GO:0006390 transcription from mitochondrial
promoter		 P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00013680
GO:0007413 axonal fasciculation P
IMP
CelWBGene00013680
GO:0008150 biological_process P
ND
MmuMGI:1915843
GO:0009060 aerobic respiration P
IMP
SceS000001858
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt1g68990
GO:0009860 pollen tube growth P
IMP
AthAt1g68990
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013680
GO:0048481 ovule development P
IMP
AthAt1g68990

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC26H5.12
(O13993)		 YFL036W
(S000001858)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPAC26H5.12
GO:0005739 mitochondrion C
IDA
SceS000001858
GO:0005759 mitochondrial matrix C
IDA
SceS000001858
ISS
SpoSPAC26H5.12
GO:0005829 cytosol C
IDA
SpoSPAC26H5.12
GO:0034245 mitochondrial DNA-directed RNA polymerase
complex		 C
IDA
SceS000001858
GO:0042645 mitochondrial nucleoid C
IDA
SceS000001858
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001858
ISS
SpoSPAC26H5.12
GO:0000002 mitochondrial genome maintenance P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0006390 transcription from mitochondrial
promoter		 P
IMP
SceS000001858
ISS
SpoSPAC26H5.12
GO:0009060 aerobic respiration P
IMP
SceS000001858

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GO info in one table:

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