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Search term: YFR001W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LOC1
SGD link S000001897
Alternative ID YFR001W
Description Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles
Synonyms YFR001W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
41927

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) LOC1
(S000001897)		 GI:14318523
Kluyveromyces lactis (Kla) KLLA0E14300g GI:50309175
Eremothecium gossypii (Ego) AGOS_AGR001W GI:45201096


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000001897
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001897
GO:0003729 mRNA binding F
IDA
SceS000001897
IPI
SceS000001897
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001897
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001897
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001897
GO:0008298 intracellular mRNA localization P
IMP
SceS000001897
GO:0034613 cellular protein localization P
RCA
SceS000001897
GO:0042273 ribosomal large subunit biogenesis P
IMP
SceS000001897
IPI
SceS000001897

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17581

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago4311 AGR001W
Candida glabrata (Cgl) cgl1329 CAGL0F02299g
Debaryomyces hansenii (Dha) dha3146 DEHA0D18909g
Kluyveromyces lactis (Kla) kla3592 KLLA0E14300g
Neurospora crassa (Ncr) ncr1260 NCU01301.2
Saccharomyces cerevisiae (Sce) sce2024 YFR001W
(S000001897)
Yarrowia lipolytica (Yli) yli3528 YALI0D19624g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000001897
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001897
GO:0003729 mRNA binding F
IDA
SceS000001897
IPI
SceS000001897
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001897
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001897
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001897
GO:0008298 intracellular mRNA localization P
IMP
SceS000001897
GO:0034613 cellular protein localization P
RCA
SceS000001897
GO:0042273 ribosomal large subunit biogenesis P
IMP
SceS000001897
IPI
SceS000001897

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