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Search term: YFR037C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RSC8
SGD link S000001933
Alternative ID YFR037C
Description Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters
Synonyms YFR037C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1279 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Chromatin remodeling factor subunit and related transcription factors

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g21700 GI:15219067
Arabidopsis thaliana (Ath) At2g33610 GI:15226136
Arabidopsis thaliana (Ath) At2g47620 GI:15226637
Arabidopsis thaliana (Ath) At4g34430 GI:15235371
Caenorhabditis elegans (Cel) CE25208
(WBGene00004203)		 GI:17566496 Q9U2W6
Drosophila melanogaster (Dme) 7300090 GI:7300090
Homo sapiens (Hsa) Hs16158201_1 GI:16158201
Homo sapiens (Hsa) Hs21237802 GI:21237802
Homo sapiens (Hsa) Hs21237805 GI:20072796 Q8TAQ2
Homo sapiens (Hsa) Hs21237808 GI:20553024
Homo sapiens (Hsa) HsM4507079 GI:4507079
Homo sapiens (Hsa) HsM4507081 GI:4507081
Saccharomyces cerevisiae (Sce) YFR037c
(S000001933)		 GI:14318562 P43609
Saccharomyces cerevisiae (Sce) YJL176c_2 GI:6322286 P32591
Schizosaccharomyces pombe (Spo) SPAC17G6.10 GI:19115169 O13788
Schizosaccharomyces pombe (Spo) SPAC23H3.10 GI:19114712 O14470
Encephalitozoon cuniculi (Ecu) ECU05g0350 GI:19173572 Q8SRZ7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC17G6.10
SPAC23H3.10
GO:0005634 nucleus C
IDA
AthAt2g33610
SceS000001933
SpoSPAC17G6.10
GO:0005737 cytoplasm C
IDA
SpoSPAC23H3.10
GO:0005829 cytosol C
IDA
SpoSPAC17G6.10
GO:0016514 SWI/SNF complex C
IDA
SpoSPAC17G6.10
SPAC23H3.10
ISS
AthAt2g47620
At1g21700
At2g33610
GO:0016585 chromatin remodeling complex C
ISS
AthAt1g21700
GO:0016586 RSC complex C
IDA
SceS000001933
SpoSPAC17G6.10
SPAC23H3.10
GO:0003677 DNA binding F
ISS
AthAt2g33610
At2g47620
At4g34430
At1g21700
SpoSPAC23H3.10
SPAC17G6.10
GO:0003700 transcription factor activity F
ISS
AthAt4g34430
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000001933
GO:0016772 transferase activity, transferring
phosphorus-containing groups		 F
RCA
SceS000001933
GO:0000003 reproduction P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0000082 G1/S transition of mitotic cell
cycle		 P
IMP
SceS000001933
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00004203
GO:0002119 nematode larval development P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IDA
SceS000001933
IMP
SceS000001933
GO:0006337 nucleosome disassembly P
IDA
SceS000001933
GO:0006338 chromatin remodeling P
ISS
AthAt2g47620
At2g33610
At1g21700
SpoSPAC17G6.10
NAS
SpoSPAC23H3.10
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000001933
GO:0009792 embryo development ending in birth or egg
hatching		 P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IC
SpoSPAC23H3.10
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
NAS
SpoSPAC17G6.10
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
NAS
SpoSPAC17G6.10
GO:0035262 gonad morphogenesis P
IMP
CelWBGene00004203
GO:0040007 growth P
IMP
CelWBGene00004203
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004203
GO:0040018 positive regulation of multicellular organism
growth		 P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004203
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004203
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000001933
GO:0045449 regulation of transcription P
IMP
SceS000001933
GO:0045941 positive regulation of transcription P
RCA
SceS000001933
GO:0046662 regulation of oviposition P
IMP
CelWBGene00004203
GO:0051276 chromosome organization P
RCA
SceS000001933

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
69526

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RSC8
(S000001933)		 GI:14318562 P43609
Kluyveromyces lactis (Kla) KLLA0E04026g GI:50308259
Eremothecium gossypii (Ego) AGOS_ADL097W GI:45187776


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000001933
GO:0016586 RSC complex C
IDA
SceS000001933
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000001933
GO:0016772 transferase activity, transferring
phosphorus-containing groups		 F
RCA
SceS000001933
GO:0000082 G1/S transition of mitotic cell
cycle		 P
IMP
SceS000001933
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IDA
SceS000001933
IMP
SceS000001933
GO:0006337 nucleosome disassembly P
IDA
SceS000001933
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000001933
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000001933
GO:0045449 regulation of transcription P
IMP
SceS000001933
GO:0045941 positive regulation of transcription P
RCA
SceS000001933
GO:0051276 chromosome organization P
RCA
SceS000001933

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_310

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5402 ENSANGP00000016524
Anopheles gambiae (Aga) aga5401 ENSANGP00000027316
Ashbya gossypii (Ago) ago1644 ADL097W
Ashbya gossypii (Ago) ago2371 AEL135C
Arabidopsis thaliana (Ath) ath2328 At1g21700.1
Arabidopsis thaliana (Ath) ath10396 At2g33610.1
Arabidopsis thaliana (Ath) ath12019 At2g47620.1
Arabidopsis thaliana (Ath) ath21582 At4g34430.1
Arabidopsis thaliana (Ath) ath21583 At4g34430.2
Arabidopsis thaliana (Ath) ath21584 At4g34430.3
Arabidopsis thaliana (Ath) ath21585 At4g34430.4
Caenorhabditis elegans (Cel) cel17690 Y113G7B.23
(CE25208;
WBGene00004203)
Candida glabrata (Cgl) cgl2750 CAGL0I05258g
Candida glabrata (Cgl) cgl3102 CAGL0J02640g
Candida glabrata (Cgl) cgl5149 CAGL0M11374g
Cryptococcus neoformans (Cne) cne3201 167.m03544
Dictyostelium discoideum (Ddi) ddi11862 DDB0219999
Debaryomyces hansenii (Dha) dha2531 DEHA0D05225g
Debaryomyces hansenii (Dha) dha4786 DEHA0F09097g
Drosophila melanogaster (Dme) dme12857 CG18740-PA
(FBgn0002783)
Danio rerio (Dre) dre7555 ENSDARP00000002785
(LOC558060)		 Q7ZUU5
Danio rerio (Dre) dre9843 ENSDARP00000006461
Danio rerio (Dre) dre9841 ENSDARP00000018655
Danio rerio (Dre) dre20531 ENSDARP00000019972
Danio rerio (Dre) dre9842 ENSDARP00000036506
Danio rerio (Dre) dre20530 ENSDARP00000050432
Encephalitozoon cuniculi (Ecu) ecu1134 19173572
Takifugu rubripes (Fru) fru25653 SINFRUP00000148162
Takifugu rubripes (Fru) fru21532 SINFRUP00000161056
Takifugu rubripes (Fru) fru31792 SINFRUP00000162605
Takifugu rubripes (Fru) fru31791 SINFRUP00000167138
Takifugu rubripes (Fru) fru31794 SINFRUP00000167849
Takifugu rubripes (Fru) fru25654 SINFRUP00000172814
Takifugu rubripes (Fru) fru31790 SINFRUP00000175078
Takifugu rubripes (Fru) fru25655 SINFRUP00000175321
Takifugu rubripes (Fru) fru31793 SINFRUP00000176195
Takifugu rubripes (Fru) fru25656 SINFRUP00000176506
Gallus gallus (Gga) gga9228 ENSGALP00000008081
Gallus gallus (Gga) gga9226 ENSGALP00000008082
(CSPG5)
Gallus gallus (Gga) gga9227 ENSGALP00000008083
Homo sapiens (Hsa) hsa22407 ENSP00000254480
(SMARCC1)		 Q92922
Homo sapiens (Hsa) hsa7676 ENSP00000267064
(SMARCC2)		 Q8TAQ2-1
Homo sapiens (Hsa) hsa7677 ENSP00000302919
(SMARCC2)		 Q8TAQ2-2
Homo sapiens (Hsa) hsa22408 ENSP00000346311
Kluyveromyces lactis (Kla) kla283 KLLA0A06424g
Kluyveromyces lactis (Kla) kla3129 KLLA0E04026g
Mus musculus (Mmu) mmu3027 ENSMUSP00000026433
(MGI:1915344)		 Q6PDG5-2
Mus musculus (Mmu) mmu28352 ENSMUSP00000035057
(MGI:1203524)		 Q3UNN4
Neurospora crassa (Ncr) ncr7795 NCU08003.2
Oryza sativa (Osa) osa1673 1890.m00145
Oryza sativa (Osa) osa5533 2217.m00136
Oryza sativa (Osa) osa13505 2942.m00113
Oryza sativa (Osa) osa42657 5414.m00236
Oryza sativa (Osa) osa69364 7075.m00131
Oryza sativa (Osa) osa82445 8239.m00137
Oryza sativa (Osa) osa83134 8286.m00157
Oryza sativa (Osa) osa87968 9534.m00244
Plasmodium falciparum (Pfa) pfa5026 PFL1215c
Rattus norvegicus (Rno) rno26012 ENSRNOP00000028244
(GI:685179)
Rattus norvegicus (Rno) rno29333 ENSRNOP00000028250
(RGD:1304850)
Saccharomyces cerevisiae (Sce) sce2068 YFR037C
(S000001933)
Saccharomyces cerevisiae (Sce) sce3441 YJL176C
(S000003712)
Schizosaccharomyces pombe (Spo) spo3049 SPAC17G6.10 O13788
Schizosaccharomyces pombe (Spo) spo3978 SPAC23H3.10 O14470
Yarrowia lipolytica (Yli) yli5524 YALI0F04334g
Yarrowia lipolytica (Yli) yli6014 YALI0F15939g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC17G6.10
SPAC23H3.10
GO:0001741 XY body C
IDA
MmuMGI:1203524
GO:0005622 intracellular C
IDA
MmuMGI:1203524
GO:0005634 nucleus C
IDA
AthAt2g33610
MmuMGI:1203524
SceS000001933
S000003712
SpoSPAC17G6.10
GO:0005737 cytoplasm C
IDA
SpoSPAC23H3.10
GO:0005829 cytosol C
IDA
SpoSPAC17G6.10
GO:0016514 SWI/SNF complex C
IDA
SceS000003712
SpoSPAC17G6.10
SPAC23H3.10
IMP
SceS000003712
ISS
AthAt2g47620
At1g21700
At2g33610
TAS
MmuMGI:1203524
GO:0016585 chromatin remodeling complex C
ISS
AthAt1g21700
DmeFBgn0002783
GO:0016586 RSC complex C
IDA
SceS000001933
SpoSPAC17G6.10
SPAC23H3.10
GO:0035060 brahma complex C
IDA
DmeFBgn0002783
NAS
DmeFBgn0002783
TAS
DmeFBgn0002783
GO:0071564 npBAF complex C
IDA
MmuMGI:1203524
MGI:1915344
GO:0071565 nBAF complex C
IDA
MmuMGI:1915344
MGI:1203524
GO:0003674 molecular_function F
ND
MmuMGI:1915344
GO:0003677 DNA binding F
ISS
AthAt2g33610
At2g47620
At4g34430
At1g21700
SpoSPAC23H3.10
SPAC17G6.10
GO:0003682 chromatin binding F
IDA
MmuMGI:1203524
GO:0003700 transcription factor activity F
ISS
AthAt4g34430
GO:0003713 transcription coactivator activity F
IC
DmeFBgn0002783
GO:0005515 protein binding F
IPI
DmeFBgn0002783
MmuMGI:1203524
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000001933
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0002783
TAS
SceS000003712
GO:0016772 transferase activity, transferring
phosphorus-containing groups		 F
RCA
SceS000001933
GO:0000003 reproduction P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0000082 G1/S transition of mitotic cell
cycle		 P
IMP
SceS000001933
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00004203
GO:0002119 nematode larval development P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IDA
SceS000001933
IMP
SceS000001933
GO:0006323 DNA packaging P
TAS
MmuMGI:1203524
GO:0006337 nucleosome disassembly P
IDA
SceS000001933
GO:0006338 chromatin remodeling P
ISS
AthAt2g47620
At2g33610
At1g21700
SpoSPAC17G6.10
NAS
DmeFBgn0002783
SpoSPAC23H3.10
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000001933
GO:0008150 biological_process P
ND
MmuMGI:1915344
GO:0008286 insulin receptor signaling pathway P
IDA
MmuMGI:1203524
GO:0008586 imaginal disc-derived wing vein
morphogenesis		 P
IMP
DmeFBgn0002783
GO:0008587 imaginal disc-derived wing margin
morphogenesis		 P
IMP
DmeFBgn0002783
GO:0009792 embryo development ending in birth or egg
hatching		 P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0009887 organ morphogenesis P
IMP
MmuMGI:1203524
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IC
SpoSPAC23H3.10
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
NAS
SpoSPAC17G6.10
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
NAS
SpoSPAC17G6.10
GO:0035262 gonad morphogenesis P
IMP
CelWBGene00004203
GO:0040007 growth P
IMP
CelWBGene00004203
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004203
GO:0040018 positive regulation of multicellular organism
growth		 P
IGI
CelWBGene00004203
IMP
CelWBGene00004203
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004203
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004203
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000001933
S000003712
GO:0045449 regulation of transcription P
IMP
SceS000001933
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IDA
DmeFBgn0002783
SceS000003712
GO:0045941 positive regulation of transcription P
RCA
SceS000001933
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IGI
MmuMGI:1203524
GO:0046662 regulation of oviposition P
IMP
CelWBGene00004203
GO:0048477 oogenesis P
NAS
DmeFBgn0002783
GO:0051276 chromosome organization P
RCA
SceS000001933

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC17G6.10
(O13788)		 YFR037C
(S000001933)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC17G6.10
GO:0005634 nucleus C
IDA
SceS000001933
SpoSPAC17G6.10
GO:0005829 cytosol C
IDA
SpoSPAC17G6.10
GO:0016514 SWI/SNF complex C
IDA
SpoSPAC17G6.10
GO:0016586 RSC complex C
IDA
SceS000001933
SpoSPAC17G6.10
GO:0003677 DNA binding F
ISS
SpoSPAC17G6.10
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000001933
GO:0016772 transferase activity, transferring
phosphorus-containing groups		 F
RCA
SceS000001933
GO:0000082 G1/S transition of mitotic cell
cycle		 P
IMP
SceS000001933
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IDA
SceS000001933
IMP
SceS000001933
GO:0006337 nucleosome disassembly P
IDA
SceS000001933
GO:0006338 chromatin remodeling P
ISS
SpoSPAC17G6.10
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000001933
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
NAS
SpoSPAC17G6.10
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
NAS
SpoSPAC17G6.10
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000001933
GO:0045449 regulation of transcription P
IMP
SceS000001933
GO:0045941 positive regulation of transcription P
RCA
SceS000001933
GO:0051276 chromosome organization P
RCA
SceS000001933

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Query species:

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GO info in one table:

s.khadayate@ucl.ac.uk