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Search term: YFR055W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name IRC7
SGD link S000001952
Alternative ID YFR055W
Description Putative cystathionine beta-lyase; involved in copper ion homeostasis and sulfur metabolism; null mutant displays increased levels of spontaneous Rad52p foci; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner
Synonyms YFR055W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0053 ACDHYP-

KOGs classification KOGs description
METABOLISM Cystathionine beta-lyases/cystathionine gamma-synthases

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g33320 GI:15217498
Arabidopsis thaliana (Ath) At1g64660 GI:15217709
Arabidopsis thaliana (Ath) At3g01120 GI:15232042
Arabidopsis thaliana (Ath) At3g57050 GI:15230203
Caenorhabditis elegans (Cel) CE07648
(WBGene00022856)
GI:17538055 P55216
Caenorhabditis elegans (Cel) CE15884
(WBGene00009048)
GI:17560056 O45391
Caenorhabditis elegans (Cel) CE17400 GI:17505573
Drosophila melanogaster (Dme) 7302582
(FBgn0000566)
GI:19922554
Homo sapiens (Hsa) Hs21361334 GI:12314252 P32929
Homo sapiens (Hsa) HsM4503125 GI:4503125
Saccharomyces cerevisiae (Sce) YAL012w
(S000000010)
GI:6319307 P31373
Saccharomyces cerevisiae (Sce) YFR055w
(S000001952)
GI:14318580 P43623
Saccharomyces cerevisiae (Sce) YGL184c
(S000003152)
GI:6321254 P53101
Saccharomyces cerevisiae (Sce) YHR112c GI:6321904 P38716
Saccharomyces cerevisiae (Sce) YJR130c
(S000003891)
GI:6322590 P47164
Saccharomyces cerevisiae (Sce) YLL058w GI:6322970 Q12198
Saccharomyces cerevisiae (Sce) YLR303w
(S000004294)
GI:6323333 P06106
Saccharomyces cerevisiae (Sce) YML082w GI:6323557 Q04533
Schizosaccharomyces pombe (Spo) SPAC23A1.14c GI:19115355 O42851
Schizosaccharomyces pombe (Spo) SPBC15D4.09c GI:19113041 O74314
Schizosaccharomyces pombe (Spo) SPBC428.11 GI:19111981 O13326
Schizosaccharomyces pombe (Spo) SPCC11E10.01 GI:19075697 O94350
Arabidopsis thaliana (Ath) At1g33320 GI:15217498
Arabidopsis thaliana (Ath) At1g64660 GI:15217709
Arabidopsis thaliana (Ath) At3g01120 GI:15232042
Arabidopsis thaliana (Ath) At3g57050 GI:15230203
Caenorhabditis elegans (Cel) CE07648
(WBGene00022856)
GI:17538055 P55216
Caenorhabditis elegans (Cel) CE15884
(WBGene00009048)
GI:17560056 O45391
Caenorhabditis elegans (Cel) CE17400 GI:17505573
Drosophila melanogaster (Dme) 7302582
(FBgn0000566)
GI:19922554
Homo sapiens (Hsa) Hs21361334 GI:12314252 P32929
Homo sapiens (Hsa) HsM4503125 GI:4503125
Saccharomyces cerevisiae (Sce) YAL012w
(S000000010)
GI:6319307 P31373
Saccharomyces cerevisiae (Sce) YFR055w
(S000001952)
GI:14318580 P43623
Saccharomyces cerevisiae (Sce) YGL184c
(S000003152)
GI:6321254 P53101
Saccharomyces cerevisiae (Sce) YHR112c GI:6321904 P38716
Saccharomyces cerevisiae (Sce) YJR130c
(S000003891)
GI:6322590 P47164
Saccharomyces cerevisiae (Sce) YLL058w GI:6322970 Q12198
Saccharomyces cerevisiae (Sce) YLR303w
(S000004294)
GI:6323333 P06106
Saccharomyces cerevisiae (Sce) YML082w GI:6323557 Q04533
Schizosaccharomyces pombe (Spo) SPAC23A1.14c GI:19115355 O42851
Schizosaccharomyces pombe (Spo) SPBC15D4.09c GI:19113041 O74314
Schizosaccharomyces pombe (Spo) SPBC428.11 GI:19111981 O13326
Schizosaccharomyces pombe (Spo) SPCC11E10.01 GI:19075697 O94350
Arabidopsis thaliana (Ath) At1g33320 GI:15217498
Arabidopsis thaliana (Ath) At1g64660 GI:15217709
Arabidopsis thaliana (Ath) At3g01120 GI:15232042
Arabidopsis thaliana (Ath) At3g57050 GI:15230203
Caenorhabditis elegans (Cel) CE07648
(WBGene00022856)
GI:17538055 P55216
Caenorhabditis elegans (Cel) CE15884
(WBGene00009048)
GI:17560056 O45391
Caenorhabditis elegans (Cel) CE17400 GI:17505573
Drosophila melanogaster (Dme) 7302582
(FBgn0000566)
GI:19922554
Homo sapiens (Hsa) Hs21361334 GI:12314252 P32929
Homo sapiens (Hsa) HsM4503125 GI:4503125
Saccharomyces cerevisiae (Sce) YAL012w
(S000000010)
GI:6319307 P31373
Saccharomyces cerevisiae (Sce) YFR055w
(S000001952)
GI:14318580 P43623
Saccharomyces cerevisiae (Sce) YGL184c
(S000003152)
GI:6321254 P53101
Saccharomyces cerevisiae (Sce) YHR112c GI:6321904 P38716
Saccharomyces cerevisiae (Sce) YJR130c
(S000003891)
GI:6322590 P47164
Saccharomyces cerevisiae (Sce) YLL058w GI:6322970 Q12198
Saccharomyces cerevisiae (Sce) YLR303w
(S000004294)
GI:6323333 P06106
Saccharomyces cerevisiae (Sce) YML082w GI:6323557 Q04533
Schizosaccharomyces pombe (Spo) SPAC23A1.14c GI:19115355 O42851
Schizosaccharomyces pombe (Spo) SPBC15D4.09c GI:19113041 O74314
Schizosaccharomyces pombe (Spo) SPBC428.11 GI:19111981 O13326
Schizosaccharomyces pombe (Spo) SPCC11E10.01 GI:19075697 O94350


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0001950 plasma membrane enriched fraction C
IDA
SceS000004294
GO:0005575 cellular_component C
ND
SceS000003152
YLL058w
S000001952
SpoSPAC23A1.14c
GO:0005634 nucleus C
IDA
SceS000003891
YML082w
SpoSPBC15D4.09c
SPBC428.11
ISS
SpoSPBC15D4.09c
GO:0005737 cytoplasm C
IDA
SceYHR112c
YML082w
S000003891
S000004294
S000000010
ISS
SpoSPBC15D4.09c
SPBC428.11
GO:0005777 peroxisome C
ISS
SpoSPCC11E10.01
GO:0005829 cytosol C
IDA
AthAt1g64660
SpoSPBC15D4.09c
SPBC428.11
GO:0009507 chloroplast C
IDA
AthAt3g57050
At3g01120
ISS
AthAt3g57050
GO:0003824 catalytic activity F
ISS
AthAt1g64660
GO:0003961 O-acetylhomoserine aminocarboxypropyltransferase
activity
F
IDA
SceS000004294
TAS
SceS000004294
SpoSPBC428.11
GO:0003962 cystathionine gamma-synthase activity F
IDA
AthAt3g01120
IMP
SceS000003891
ISS
AthAt3g01120
At1g33320
SceYLL058w
SpoSPBC15D4.09c
GO:0004121 cystathionine beta-lyase activity F
IMP
AthAt3g57050
SceS000003152
ISS
SceYHR112c
S000001952
S000003152
SpoSPCC11E10.01
GO:0004123 cystathionine gamma-lyase activity F
IDA
SceS000000010
IMP
SceS000000010
NAS
DmeFBgn0000566
TAS
DmeFBgn0000566
GO:0004124 cysteine synthase activity F
IDA
SceS000004294
ISS
SpoSPBC428.11
GO:0016829 lyase activity F
RCA
SceS000003891
GO:0016846 carbon-sulfur lyase activity F
ISS
SceYML082w
GO:0018826 methionine gamma-lyase activity F
IDA
AthAt1g64660
GO:0000096 sulfur amino acid metabolic process P
NAS
DmeFBgn0000566
TAS
SceS000000010
GO:0006082 organic acid metabolic process P
RCA
SceS000003891
GO:0006312 mitotic recombination P
IMP
SceS000001952
GO:0006414 translational elongation P
RCA
SceS000000010
S000001952
GO:0006519 cellular amino acid and derivative metabolic
process
P
RCA
SceS000003891
S000000010
GO:0006520 cellular amino acid metabolic process P
ISS
AthAt1g64660
GO:0006534 cysteine metabolic process P
ISS
SpoSPBC15D4.09c
TAS
SceS000000010
GO:0006555 methionine metabolic process P
IMP
SceS000004294
ISS
SpoSPBC428.11
GO:0006725 cellular aromatic compound metabolic
process
P
RCA
SceS000003891
GO:0006790 sulfur metabolic process P
IMP
SceS000003891
ISS
SceYLL058w
YHR112c
S000001952
YML082w
RCA
SceS000000010
S000003152
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000003891
S000000010
GO:0006878 cellular copper ion homeostasis P
IEP
SceS000001952
GO:0009086 methionine biosynthetic process P
IMP
AthAt3g01120
SceS000003152
ISS
AthAt1g33320
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00022856
GO:0019279 L-methionine biosynthetic process from
L-homoserine via cystathionine
P
IC
SpoSPCC11E10.01
TAS
AthAt3g57050
GO:0019281 L-methionine biosynthetic process from homoserine
via O-succinyl-L-homoserine and
cystathionine
P
ISS
SpoSPBC15D4.09c
GO:0019343 cysteine biosynthetic process via
cystathionine
P
IMP
SceS000000010
GO:0019344 cysteine biosynthetic process P
IMP
SceS000000010
ISS
SpoSPBC428.11
TAS
SceS000004294
GO:0019346 transsulfuration P
IMP
SceS000000010
S000003891
S000003152
GO:0019458 methionine catabolic process via
2-oxobutanoate
P
TAS
AthAt1g64660
GO:0046483 heterocycle metabolic process P
RCA
SceS000000010
S000003152

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_23755

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Escherichia coli (Eco) eco2907 16130906
Saccharomyces cerevisiae (Sce) sce2087 YFR055W
(S000001952)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000001952
GO:0004121 cystathionine beta-lyase activity F
ISS
SceS000001952
GO:0006312 mitotic recombination P
IMP
SceS000001952
GO:0006414 translational elongation P
RCA
SceS000001952
GO:0006790 sulfur metabolic process P
ISS
SceS000001952
GO:0006878 cellular copper ion homeostasis P
IEP
SceS000001952

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GO info in one table:

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