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Search term: YGL014W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PUF4
SGD link S000002982
Alternative ID YGL014W
Description Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors
Synonyms YGL014W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2049 A---YP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g01410 GI:15223395
Arabidopsis thaliana (Ath) At1g21620 GI:15219041
Arabidopsis thaliana (Ath) At1g22240 GI:15219849
Arabidopsis thaliana (Ath) At1g35730 GI:15220217
Arabidopsis thaliana (Ath) At1g35750 GI:15220219
Arabidopsis thaliana (Ath) At1g35850 GI:15220239
Arabidopsis thaliana (Ath) At1g78160 GI:15218233
Arabidopsis thaliana (Ath) At4g08560_2 GI:15236527
Arabidopsis thaliana (Ath) At4g08840 GI:15236630
Arabidopsis thaliana (Ath) At5g09610 GI:15242461
Arabidopsis thaliana (Ath) At5g43090 GI:15239174
Arabidopsis thaliana (Ath) At5g43110 GI:15239178
Arabidopsis thaliana (Ath) At5g56510 GI:15241239
Arabidopsis thaliana (Ath) At5g59280 GI:15237851
Arabidopsis thaliana (Ath) At5g60110 GI:15238618
Arabidopsis thaliana (Ath) At5g60180 GI:15238635
Arabidopsis thaliana (Ath) At5g64490 GI:15237713
Saccharomyces cerevisiae (Sce) YGL014w
(S000002982)
GI:6321424 P25339
Saccharomyces cerevisiae (Sce) YGL178w
(S000003146)
GI:6321260 P39016
Schizosaccharomyces pombe (Spo) SPAC4G8.03c GI:19113974 Q09829
Schizosaccharomyces pombe (Spo) SPAC6G9.14 GI:19115035 Q92359


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g64490
At4g08840
At1g01410
At5g60180
At5g09610
At5g43090
GO:0005634 nucleus C
IDA
AthAt5g56510
At5g43110
GO:0005737 cytoplasm C
IDA
AthAt1g78160
At1g35730
At1g35750
At5g43110
At5g56510
At5g60110
At1g22240
SceS000002982
S000003146
SpoSPAC4G8.03c
ISS
SpoSPAC4G8.03c
SPAC6G9.14
GO:0005794 Golgi apparatus C
IDA
SpoSPAC4G8.03c
GO:0005829 cytosol C
IDA
SpoSPAC6G9.14
GO:0003723 RNA binding F
ISS
AthAt1g78160
At1g35730
At5g43090
At5g59280
At1g35750
At5g60180
At1g35850
At1g21620
At1g22240
At5g56510
At4g08840
At5g09610
At5g43110
At5g60110
GO:0003729 mRNA binding F
IDA
SceS000003146
S000002982
IPI
AthAt1g78160
ISS
SceS000002982
SpoSPAC4G8.03c
SPAC6G9.14
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000002982
S000003146
ISS
SpoSPAC4G8.03c
SPAC6G9.14
GO:0000321 re-entry into mitotic cell cycle after pheromone
arrest
P
IMP
SceS000003146
GO:0001302 replicative cell aging P
IMP
SceS000003146
GO:0001308 loss of chromatin silencing involved in
replicative cell aging
P
IEP
SceS000003146
IGI
SceS000003146
S000002982
IMP
SceS000002982
S000003146
GO:0008104 protein localization P
IMP
SceS000002982
S000003146
GO:0008150 biological_process P
ND
AthAt5g64490
At1g35750
At5g60180
At1g01410
At4g08840
GO:0017148 negative regulation of translation P
IDA
SceS000002982
S000003146
GO:0031505 fungal-type cell wall organization P
IMP
SceS000003146

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39064

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) PUF4
(S000002982)
GI:6321424 P25339
Kluyveromyces lactis (Kla) KLLA0A09097g GI:50302921
Eremothecium gossypii (Ego) AGOS_AGL086C GI:45201010


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000002982
GO:0003729 mRNA binding F
IDA
SceS000002982
ISS
SceS000002982
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000002982
GO:0001308 loss of chromatin silencing involved in
replicative cell aging
P
IGI
SceS000002982
IMP
SceS000002982
GO:0008104 protein localization P
IMP
SceS000002982
GO:0017148 negative regulation of translation P
IDA
SceS000002982

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3047

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago4225 AGL086C
Arabidopsis thaliana (Ath) ath2386 At1g22240.1
Arabidopsis thaliana (Ath) ath3688 At1g35730.1
Arabidopsis thaliana (Ath) ath3689 At1g35750.1
Arabidopsis thaliana (Ath) ath7163 At1g78160.1
Arabidopsis thaliana (Ath) ath18608 At4g08840.1
Arabidopsis thaliana (Ath) ath27663 At5g56510.1
Candida glabrata (Cgl) cgl18 CAGL0A00473g
Cryptococcus neoformans (Cne) cne5819 179.m00694
Dictyostelium discoideum (Ddi) ddi8211 DDB0188671
Debaryomyces hansenii (Dha) dha395 DEHA0A08910g
Kluyveromyces lactis (Kla) kla395 KLLA0A09097g
Neurospora crassa (Ncr) ncr1727 NCU01775.2
Oryza sativa (Osa) osa30123 4342.m00119
Oryza sativa (Osa) osa64995 6819.m00142
Oryza sativa (Osa) osa73455 7120.m00205
Oryza sativa (Osa) osa74839 7343.m00142
Oryza sativa (Osa) osa79125 7400.m00110
Oryza sativa (Osa) osa77107 7426.m00148
Plasmodium falciparum (Pfa) pfa3636 PFE0935c
Saccharomyces cerevisiae (Sce) sce2106 YGL014W
(S000002982)
Schizosaccharomyces pombe (Spo) spo1092 SPAC6G9.14 Q92359
Yarrowia lipolytica (Yli) yli4292 YALI0E10395g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g08840
GO:0005634 nucleus C
IDA
AthAt5g56510
GO:0005737 cytoplasm C
IDA
AthAt1g78160
At1g35730
At1g35750
At5g56510
At1g22240
SceS000002982
ISS
SpoSPAC6G9.14
GO:0005829 cytosol C
IDA
SpoSPAC6G9.14
GO:0003723 RNA binding F
ISS
AthAt1g78160
At1g35730
At1g35750
At1g22240
At5g56510
At4g08840
GO:0003729 mRNA binding F
IDA
SceS000002982
IPI
AthAt1g78160
ISS
SceS000002982
SpoSPAC6G9.14
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000002982
ISS
SpoSPAC6G9.14
GO:0001308 loss of chromatin silencing involved in
replicative cell aging
P
IGI
SceS000002982
IMP
SceS000002982
GO:0008104 protein localization P
IMP
SceS000002982
GO:0008150 biological_process P
ND
AthAt1g35750
At4g08840
GO:0017148 negative regulation of translation P
IDA
SceS000002982

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC6G9.14
(Q92359)
YGL014W
(S000002982)
SPAC4G8.03c
(Q09829)
YGL014W
(S000002982)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000002982
SpoSPAC4G8.03c
ISS
SpoSPAC4G8.03c
SPAC6G9.14
GO:0005794 Golgi apparatus C
IDA
SpoSPAC4G8.03c
GO:0005829 cytosol C
IDA
SpoSPAC6G9.14
GO:0003729 mRNA binding F
IDA
SceS000002982
ISS
SceS000002982
SpoSPAC4G8.03c
SPAC6G9.14
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000002982
ISS
SpoSPAC4G8.03c
SPAC6G9.14
GO:0001308 loss of chromatin silencing involved in
replicative cell aging
P
IGI
SceS000002982
IMP
SceS000002982
GO:0008104 protein localization P
IMP
SceS000002982
GO:0017148 negative regulation of translation P
IDA
SceS000002982

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk