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Search term: YGL044C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RNA15
SGD link S000003012
Alternative ID YGL044C
Description Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p
Synonyms YGL044C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0108 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA cleavage and polyadenylation factor I complex, subunit RNA15

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g71800 GI:15217577
Caenorhabditis elegans (Cel) CE16126
(WBGene00000774)		 GI:17553656 O45577
Caenorhabditis elegans (Cel) CE16307
(WBGene00011155)		 GI:17508585 O45712
Caenorhabditis elegans (Cel) CE16308
(WBGene00011156)		 GI:17508587 O45713
Caenorhabditis elegans (Cel) CE16399
(WBGene00011730)		 GI:17555352 O45781
Caenorhabditis elegans (Cel) CE18119
(WBGene00011059)		 GI:17508567 O62337
Drosophila melanogaster (Dme) 7300420 GI:7300420
Homo sapiens (Hsa) Hs14149675
(CSTF2T)		 GI:14149675 Q9H0L4
Homo sapiens (Hsa) Hs4557493
(CSTF2)		 GI:4557493 P33240
Saccharomyces cerevisiae (Sce) YBL051c
(S000000147)		 GI:6319420 P34217
Saccharomyces cerevisiae (Sce) YGL044c
(S000003012)		 GI:6321394 P25299
Saccharomyces cerevisiae (Sce) YGR156w
(S000003388)		 GI:6321595 P39927
Saccharomyces cerevisiae (Sce) YGR250c GI:6321689 P53316
Schizosaccharomyces pombe (Spo) SPAC12G12.03 GI:19113807 Q09868
Schizosaccharomyces pombe (Spo) SPAC644.16 GI:19114796 Q9P6P7
Schizosaccharomyces pombe (Spo) SPBC16A3.18 GI:19113563 O42923
Schizosaccharomyces pombe (Spo) SPBC3B9.11c GI:19113461 O43040
Encephalitozoon cuniculi (Ecu) ECU08g0380 GI:19173364 Q8SRE5
Arabidopsis thaliana (Ath) At1g71800 GI:15217577
Caenorhabditis elegans (Cel) CE16126
(WBGene00000774)		 GI:17553656 O45577
Caenorhabditis elegans (Cel) CE16307
(WBGene00011155)		 GI:17508585 O45712
Caenorhabditis elegans (Cel) CE16308
(WBGene00011156)		 GI:17508587 O45713
Caenorhabditis elegans (Cel) CE16399
(WBGene00011730)		 GI:17555352 O45781
Caenorhabditis elegans (Cel) CE18119
(WBGene00011059)		 GI:17508567 O62337
Drosophila melanogaster (Dme) 7300420 GI:7300420
Homo sapiens (Hsa) Hs14149675
(CSTF2T)		 GI:14149675 Q9H0L4
Homo sapiens (Hsa) Hs4557493
(CSTF2)		 GI:4557493 P33240
Saccharomyces cerevisiae (Sce) YBL051c
(S000000147)		 GI:6319420 P34217
Saccharomyces cerevisiae (Sce) YGL044c
(S000003012)		 GI:6321394 P25299
Saccharomyces cerevisiae (Sce) YGR156w
(S000003388)		 GI:6321595 P39927
Saccharomyces cerevisiae (Sce) YGR250c GI:6321689 P53316
Schizosaccharomyces pombe (Spo) SPAC12G12.03 GI:19113807 Q09868
Schizosaccharomyces pombe (Spo) SPAC644.16 GI:19114796 Q9P6P7
Schizosaccharomyces pombe (Spo) SPBC16A3.18 GI:19113563 O42923
Schizosaccharomyces pombe (Spo) SPBC3B9.11c GI:19113461 O43040
Encephalitozoon cuniculi (Ecu) ECU08g0380 GI:19173364 Q8SRE5
Arabidopsis thaliana (Ath) At1g71800 GI:15217577
Caenorhabditis elegans (Cel) CE16126
(WBGene00000774)		 GI:17553656 O45577
Caenorhabditis elegans (Cel) CE16307
(WBGene00011155)		 GI:17508585 O45712
Caenorhabditis elegans (Cel) CE16308
(WBGene00011156)		 GI:17508587 O45713
Caenorhabditis elegans (Cel) CE16399
(WBGene00011730)		 GI:17555352 O45781
Caenorhabditis elegans (Cel) CE18119
(WBGene00011059)		 GI:17508567 O62337
Drosophila melanogaster (Dme) 7300420 GI:7300420
Homo sapiens (Hsa) Hs14149675
(CSTF2T)		 GI:14149675 Q9H0L4
Homo sapiens (Hsa) Hs4557493
(CSTF2)		 GI:4557493 P33240
Saccharomyces cerevisiae (Sce) YBL051c
(S000000147)		 GI:6319420 P34217
Saccharomyces cerevisiae (Sce) YGL044c
(S000003012)		 GI:6321394 P25299
Saccharomyces cerevisiae (Sce) YGR156w
(S000003388)		 GI:6321595 P39927
Saccharomyces cerevisiae (Sce) YGR250c GI:6321689 P53316
Schizosaccharomyces pombe (Spo) SPAC12G12.03 GI:19113807 Q09868
Schizosaccharomyces pombe (Spo) SPAC644.16 GI:19114796 Q9P6P7
Schizosaccharomyces pombe (Spo) SPBC16A3.18 GI:19113563 O42923
Schizosaccharomyces pombe (Spo) SPBC3B9.11c GI:19113461 O43040
Encephalitozoon cuniculi (Ecu) ECU08g0380 GI:19173364 Q8SRE5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g71800
GO:0005622 intracellular C
IDA
HsaCSTF2T
GO:0005634 nucleus C
IDA
HsaCSTF2
SceS000003388
SpoSPAC644.16
SPBC3B9.11c
GO:0005737 cytoplasm C
IDA
SceS000000147
YGR250c
SpoSPAC12G12.03
SPBC16A3.18
GO:0005829 cytosol C
IDA
SpoSPAC12G12.03
SPBC16A3.18
SPBC3B9.11c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPBC3B9.11c
IPI
SceS000003388
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000003012
ISS
SpoSPAC644.16
GO:0010494 stress granule C
IDA
SceYGR250c
GO:0016607 nuclear speck C
IDA
CelWBGene00000774
GO:0003674 molecular_function F
ND
SceS000000147
GO:0003723 RNA binding F
IC
SceS000003388
ISS
AthAt1g71800
SceYGR250c
SpoSPAC12G12.03
SPAC644.16
SPBC16A3.18
SPBC3B9.11c
RCA
SceS000000147
GO:0003729 mRNA binding F
IDA
AthAt1g71800
SceS000003012
GO:0005515 protein binding F
IPI
AthAt1g71800
HsaCSTF2
GO:0016564 transcription repressor activity F
IMP
AthAt1g71800
GO:0046982 protein heterodimerization activity F
IPI
SceS000003012
GO:0000003 reproduction P
IMP
CelWBGene00000774
GO:0000077 DNA damage checkpoint P
IGI
SceS000000147
IPI
SceS000000147
GO:0000086 G2/M transition of mitotic cell
cycle		 P
IMP
SceS000000147
GO:0006378 mRNA polyadenylation P
IC
SpoSPBC3B9.11c
IDA
SceS000003012
IMP
SceS000003388
IPI
SceS000003388
ISS
SpoSPAC644.16
TAS
HsaCSTF2
GO:0006379 mRNA cleavage P
IDA
SceS000003012
IMP
SceS000003388
IPI
SceS000003388
ISS
SpoSPAC644.16
TAS
HsaCSTF2
GO:0006414 translational elongation P
RCA
SceS000003388
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00000774
GO:0008150 biological_process P
ND
SceYGR250c
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00011730
GO:0008380 RNA splicing P
EXP
HsaCSTF2
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011156
WBGene00000774
GO:0010610 regulation of mRNA stability involved in response
to stress		 P
IMP
SpoSPAC12G12.03
SPBC16A3.18
GO:0016246 RNA interference P
IMP
CelWBGene00000774
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IPI
SceS000003388
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IMP
SceS000003388
IPI
SceS000003388
GO:0031123 RNA 3'-end processing P
IMP
AthAt1g71800
RCA
SceS000003388
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000003388
GO:0034599 cellular response to oxidative
stress		 P
IGI
SpoSPAC12G12.03
SPBC16A3.18
GO:0048589 developmental growth P
IMP
AthAt1g71800

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
80208

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RNA15
(S000003012)		 GI:6321394 P25299
Kluyveromyces lactis (Kla) KLLA0F09383g GI:50310969
Eremothecium gossypii (Ego) AGOS_AGR010C GI:45201105


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000003012
GO:0003729 mRNA binding F
IDA
SceS000003012
GO:0046982 protein heterodimerization activity F
IPI
SceS000003012
GO:0006378 mRNA polyadenylation P
IDA
SceS000003012
GO:0006379 mRNA cleavage P
IDA
SceS000003012

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1348

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6955 ENSANGP00000003770
Anopheles gambiae (Aga) aga7933 ENSANGP00000012477
Ashbya gossypii (Ago) ago4320 AGR010C
Arabidopsis thaliana (Ath) ath6461 At1g71800.1
Caenorhabditis elegans (Cel) cel10521 F56A8.6
(CE16126;
WBGene00000774)
Caenorhabditis elegans (Cel) cel13434 R06C1.4
(CE18119;
WBGene00011059)
Candida glabrata (Cgl) cgl920 CAGL0D06182g
Cryptococcus neoformans (Cne) cne352 162.m02959
Dictyostelium discoideum (Ddi) ddi6418 DDB0218243
Debaryomyces hansenii (Dha) dha2122 DEHA0C15664g
Drosophila melanogaster (Dme) dme13270 CG7697-PA
(FBgn0027841)
Encephalitozoon cuniculi (Ecu) ecu195 19173364
Takifugu rubripes (Fru) fru17929 SINFRUP00000133041
Takifugu rubripes (Fru) fru17927 SINFRUP00000171114
Takifugu rubripes (Fru) fru17928 SINFRUP00000176473
Gallus gallus (Gga) gga16898 ENSGALP00000010908
(CSTF2)
Gallus gallus (Gga) gga16899 ENSGALP00000010910
(CSTF2)		 Q5ZLS0
Homo sapiens (Hsa) hsa33089 ENSP00000263028
Homo sapiens (Hsa) hsa3918 ENSP00000325616
Homo sapiens (Hsa) hsa3919 ENSP00000332444
(CSTF2T)		 Q9H0L4
Homo sapiens (Hsa) hsa3920 ENSP00000348689
Kluyveromyces lactis (Kla) kla4507 KLLA0F09383g
Mus musculus (Mmu) mmu29533 ENSMUSP00000033609
(MGI:1343054)		 Q8BIQ5-1
Oryza sativa (Osa) osa26822 4144.m00154
Oryza sativa (Osa) osa43432 5299.m00203
Oryza sativa (Osa) osa86117 8757.m00232
Plasmodium falciparum (Pfa) pfa4786 PFI1600w
Rattus norvegicus (Rno) rno3981 ENSRNOP00000034360
(RGD:1310026)		 B5DFH8
Rattus norvegicus (Rno) rno3980 ENSRNOP00000044488
Saccharomyces cerevisiae (Sce) sce2138 YGL044C
(S000003012)
Schizosaccharomyces pombe (Spo) spo1441 SPAC644.16 Q9P6P7
Schizosaccharomyces pombe (Spo) spo2309 SPBC3B9.11c O43040
Yarrowia lipolytica (Yli) yli4236 YALI0E09174g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g71800
GO:0005634 nucleus C
IDA
SpoSPAC644.16
SPBC3B9.11c
GO:0005829 cytosol C
IDA
SpoSPBC3B9.11c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPBC3B9.11c
GO:0005848 mRNA cleavage stimulating factor
complex		 C
ISS
DmeFBgn0027841
NAS
DmeFBgn0027841
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000003012
ISS
SpoSPAC644.16
GO:0016607 nuclear speck C
IDA
CelWBGene00000774
GO:0003723 RNA binding F
ISS
AthAt1g71800
SpoSPAC644.16
SPBC3B9.11c
GO:0003729 mRNA binding F
IDA
AthAt1g71800
SceS000003012
ISS
DmeFBgn0027841
GO:0005515 protein binding F
IPI
AthAt1g71800
GO:0016564 transcription repressor activity F
IMP
AthAt1g71800
GO:0046982 protein heterodimerization activity F
IPI
SceS000003012
GO:0000003 reproduction P
IMP
CelWBGene00000774
GO:0006378 mRNA polyadenylation P
IC
SpoSPBC3B9.11c
IDA
SceS000003012
ISS
SpoSPAC644.16
GO:0006379 mRNA cleavage P
IDA
SceS000003012
ISS
DmeFBgn0027841
SpoSPAC644.16
NAS
DmeFBgn0027841
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00000774
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00000774
GO:0016246 RNA interference P
IMP
CelWBGene00000774
GO:0031123 RNA 3'-end processing P
IMP
AthAt1g71800
GO:0048589 developmental growth P
IMP
AthAt1g71800

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC644.16
(Q9P6P7)		 YGL044C
(S000003012)
SPBC3B9.11c
(O43040)		 YGL044C
(S000003012)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC644.16
SPBC3B9.11c
GO:0005829 cytosol C
IDA
SpoSPBC3B9.11c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPBC3B9.11c
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000003012
ISS
SpoSPAC644.16
GO:0003723 RNA binding F
ISS
SpoSPAC644.16
SPBC3B9.11c
GO:0003729 mRNA binding F
IDA
SceS000003012
GO:0046982 protein heterodimerization activity F
IPI
SceS000003012
GO:0006378 mRNA polyadenylation P
IC
SpoSPBC3B9.11c
IDA
SceS000003012
ISS
SpoSPAC644.16
GO:0006379 mRNA cleavage P
IDA
SceS000003012
ISS
SpoSPAC644.16

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