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Search term: YGL063W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PUS2
SGD link S000003031
Alternative ID YGL063W
Description Mitochondrial tRNA:pseudouridine synthase; acts at positions 27 and 28, but not at position 72; efficiently and rapidly targeted to mitochondria, specifically dedicated to mitochondrial tRNA modification
Synonyms YGL063W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2553 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Pseudouridylate synthase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g20290_1 GI:15217912
Arabidopsis thaliana (Ath) At1g20370 GI:18394855
Arabidopsis thaliana (Ath) At1g76120 GI:18411027
Arabidopsis thaliana (Ath) At2g30320 GI:15227735
Arabidopsis thaliana (Ath) At5g35400 GI:15238497
Caenorhabditis elegans (Cel) CE20158
(WBGene00004248)
GI:17565126 Q9XXN0
Drosophila melanogaster (Dme) 7300636 GI:7300636 Q9VDK6
Homo sapiens (Hsa) Hs13376820 GI:13376820
Saccharomyces cerevisiae (Sce) YGL063w
(S000003031)
GI:6321375 P53167
Saccharomyces cerevisiae (Sce) YPL212c
(S000006133)
GI:6325044 Q12211
Schizosaccharomyces pombe (Spo) SPBC887.11 GI:19113277 O94295
Schizosaccharomyces pombe (Spo) SPCC126.03 GI:19075946 O94396
Schizosaccharomyces pombe (Spo) SPCC16C4.06c GI:19075416 O74451
Encephalitozoon cuniculi (Ecu) ECU04g0890 GI:19074166 Q8SS41


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g20290
At1g76120
At1g20370
GO:0005634 nucleus C
IDA
SpoSPCC126.03
SPBC887.11
IGI
SpoSPCC126.03
IPI
SceS000006133
ISS
SpoSPCC16C4.06c
SPBC887.11
GO:0005737 cytoplasm C
IDA
SpoSPCC16C4.06c
GO:0005739 mitochondrion C
IDA
SceS000003031
GO:0003674 molecular_function F
ND
AthAt1g20290
GO:0009982 pseudouridine synthase activity F
IDA
SceS000006133
SpoSPCC126.03
IGI
SceS000003031
IMP
SceS000003031
ISS
AthAt1g76120
At2g30320
At1g20370
At5g35400
SpoSPBC887.11
SPCC16C4.06c
TAS
AthAt2g30320
At5g35400
At1g76120
At1g20370
GO:0006400 tRNA modification P
IDA
SpoSPCC126.03
ISS
SpoSPCC16C4.06c
GO:0008150 biological_process P
ND
AthAt1g20290
GO:0031119 tRNA pseudouridine synthesis P
IDA
SceS000006133
IGI
SceS000003031
IMP
SceS000003031
ISS
SpoSPBC887.11
GO:0031120 snRNA pseudouridine synthesis P
IMP
SceS000006133

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1823

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga4584 ENSANGP00000014976
Ashbya gossypii (Ago) ago3090 AFL105C
Arabidopsis thaliana (Ath) ath2182 At1g20370.1
Arabidopsis thaliana (Ath) ath6928 At1g76120.1
Arabidopsis thaliana (Ath) ath6929 At1g76120.2
Caenorhabditis elegans (Cel) cel17168 W06H3.2
Candida glabrata (Cgl) cgl1192 CAGL0E05764g
Cryptococcus neoformans (Cne) cne2720 183.m01654
Dictyostelium discoideum (Ddi) ddi13192 DDB0231224
Debaryomyces hansenii (Dha) dha1646 DEHA0C04906g
Drosophila melanogaster (Dme) dme13529 CG4159-PA
(FBgn0038811)
Danio rerio (Dre) dre7954 ENSDARP00000011079
Danio rerio (Dre) dre7955 ENSDARP00000040332
Encephalitozoon cuniculi (Ecu) ecu804 19074166
Takifugu rubripes (Fru) fru22893 SINFRUP00000153426
Gallus gallus (Gga) gga7094 ENSGALP00000003706
(PUS1)
Homo sapiens (Hsa) hsa8467 ENSP00000324726
(PUS1)
Q9Y606-2
Kluyveromyces lactis (Kla) kla629 KLLA0B02244g
Mus musculus (Mmu) mmu20655 ENSMUSP00000031483
(MGI:1929237)
Q9WU56-1
Neurospora crassa (Ncr) ncr7329 NCU07528.2
Oryza sativa (Osa) osa28973 4261.m00224
Oryza sativa (Osa) osa30442 4349.m00167
Plasmodium falciparum (Pfa) pfa1897 PF08_0123
Saccharomyces cerevisiae (Sce) sce2157 YGL063W
(S000003031)
Saccharomyces cerevisiae (Sce) sce6374 YPL212C
(S000006133)
Schizosaccharomyces pombe (Spo) spo505 SPBC887.11 O94295
Schizosaccharomyces pombe (Spo) spo301 SPCC126.03 O94396
Schizosaccharomyces pombe (Spo) spo1042 SPCC16C4.06c O74451
Yarrowia lipolytica (Yli) yli2243 YALI0C12749g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g76120
At1g20370
GO:0005634 nucleus C
IDA
MmuMGI:1929237
SpoSPCC126.03
SPBC887.11
IGI
SpoSPCC126.03
IPI
SceS000006133
ISS
SpoSPCC16C4.06c
SPBC887.11
GO:0005667 transcription factor complex C
IDA
MmuMGI:1929237
GO:0005730 nucleolus C
IDA
MmuMGI:1929237
GO:0005737 cytoplasm C
IDA
SpoSPCC16C4.06c
GO:0005739 mitochondrion C
IDA
SceS000003031
GO:0003677 DNA binding F
IDA
MmuMGI:1929237
GO:0004730 pseudouridylate synthase activity F
ISS
DmeFBgn0038811
GO:0005515 protein binding F
IPI
MmuMGI:1929237
GO:0009982 pseudouridine synthase activity F
IDA
MmuMGI:1929237
SceS000006133
SpoSPCC126.03
IGI
SceS000003031
IMP
MmuMGI:1929237
SceS000003031
ISS
AthAt1g76120
At1g20370
SpoSPBC887.11
SPCC16C4.06c
TAS
AthAt1g76120
At1g20370
GO:0030374 ligand-dependent nuclear receptor transcription
coactivator activity
F
IDA
MmuMGI:1929237
GO:0006400 tRNA modification P
IDA
SpoSPCC126.03
ISS
SpoSPCC16C4.06c
GO:0008152 metabolic process P
IMP
MmuMGI:1929237
GO:0031119 tRNA pseudouridine synthesis P
IDA
MmuMGI:1929237
SceS000006133
IGI
SceS000003031
IMP
SceS000003031
ISS
SpoSPBC887.11
GO:0031120 snRNA pseudouridine synthesis P
IMP
SceS000006133
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter
P
IDA
MmuMGI:1929237

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPCC16C4.06c
(O74451)
YGL063W
(S000003031)
SPBC887.11
(O94295)
YGL063W
(S000003031)
SPCC126.03
(O94396)
YGL063W
(S000003031)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC126.03
SPBC887.11
IGI
SpoSPCC126.03
ISS
SpoSPCC16C4.06c
SPBC887.11
GO:0005737 cytoplasm C
IDA
SpoSPCC16C4.06c
GO:0005739 mitochondrion C
IDA
SceS000003031
GO:0009982 pseudouridine synthase activity F
IDA
SpoSPCC126.03
IGI
SceS000003031
IMP
SceS000003031
ISS
SpoSPBC887.11
SPCC16C4.06c
GO:0006400 tRNA modification P
IDA
SpoSPCC126.03
ISS
SpoSPCC16C4.06c
GO:0031119 tRNA pseudouridine synthesis P
IGI
SceS000003031
IMP
SceS000003031
ISS
SpoSPBC887.11

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GO info in one table:

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