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Search term: YGL078C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DBP3
SGD link S000003046
Alternative ID YGL078C
Description Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis
Synonyms YGL078C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0331 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g31970 GI:15222526
Arabidopsis thaliana (Ath) At1g55150 GI:15221998
Arabidopsis thaliana (Ath) At3g01540 GI:3149952
Arabidopsis thaliana (Ath) At3g06480 GI:15230730
Arabidopsis thaliana (Ath) At3g06980 GI:15231353
Arabidopsis thaliana (Ath) At3g22310 GI:15228722
Arabidopsis thaliana (Ath) At3g22330 GI:15228726
Arabidopsis thaliana (Ath) At4g09730 GI:15234028
Arabidopsis thaliana (Ath) At5g14610 GI:15241445
Arabidopsis thaliana (Ath) At5g62190 GI:15241726
Arabidopsis thaliana (Ath) At5g63120 GI:10177293
Caenorhabditis elegans (Cel) CE18785
(WBGene00010260)		 GI:17561644
Drosophila melanogaster (Dme) 7290730 GI:7290730 Q9W3Y5
Drosophila melanogaster (Dme) 7290853
(FBgn0029979)		 GI:18857967
Drosophila melanogaster (Dme) 7295314 GI:7295314
Drosophila melanogaster (Dme) 7296646 GI:7296646
Homo sapiens (Hsa) Hs13129006
(DDX50)		 GI:13129006 Q9NTA9
Homo sapiens (Hsa) Hs13775232 GI:13775232
Homo sapiens (Hsa) Hs13787209 GI:13787209
Homo sapiens (Hsa) Hs20477215 GI:20477215
Homo sapiens (Hsa) Hs22041399 GI:22041399
Homo sapiens (Hsa) Hs22044561 GI:22044561
Homo sapiens (Hsa) Hs4758138
(DDX5)		 GI:4758138 P17844
Homo sapiens (Hsa) Hs5453840_1 GI:5453840
Saccharomyces cerevisiae (Sce) YGL078c
(S000003046)		 GI:6321360 P20447
Saccharomyces cerevisiae (Sce) YNL112w
(S000005056)		 GI:6324217 P24783
Schizosaccharomyces pombe (Spo) SPBC17D1.06 GI:19113180 Q10202
Schizosaccharomyces pombe (Spo) SPBP8B7.16c GI:19113315 P24782
Encephalitozoon cuniculi (Ecu) ECU05g1270 GI:19173667 Q8SRV1
Encephalitozoon cuniculi (Ecu) ECU08g1080 GI:19173435 Q8SRB2
Arabidopsis thaliana (Ath) At1g31970 GI:15222526
Arabidopsis thaliana (Ath) At1g55150 GI:15221998
Arabidopsis thaliana (Ath) At3g01540 GI:3149952
Arabidopsis thaliana (Ath) At3g06480 GI:15230730
Arabidopsis thaliana (Ath) At3g06980 GI:15231353
Arabidopsis thaliana (Ath) At3g22310 GI:15228722
Arabidopsis thaliana (Ath) At3g22330 GI:15228726
Arabidopsis thaliana (Ath) At4g09730 GI:15234028
Arabidopsis thaliana (Ath) At5g14610 GI:15241445
Arabidopsis thaliana (Ath) At5g62190 GI:15241726
Arabidopsis thaliana (Ath) At5g63120 GI:10177293
Caenorhabditis elegans (Cel) CE18785
(WBGene00010260)		 GI:17561644
Drosophila melanogaster (Dme) 7290730 GI:7290730 Q9W3Y5
Drosophila melanogaster (Dme) 7290853
(FBgn0029979)		 GI:18857967
Drosophila melanogaster (Dme) 7295314 GI:7295314
Drosophila melanogaster (Dme) 7296646 GI:7296646
Homo sapiens (Hsa) Hs13129006
(DDX50)		 GI:13129006 Q9NTA9
Homo sapiens (Hsa) Hs13775232 GI:13775232
Homo sapiens (Hsa) Hs13787209 GI:13787209
Homo sapiens (Hsa) Hs20477215 GI:20477215
Homo sapiens (Hsa) Hs22041399 GI:22041399
Homo sapiens (Hsa) Hs22044561 GI:22044561
Homo sapiens (Hsa) Hs4758138
(DDX5)		 GI:4758138 P17844
Homo sapiens (Hsa) Hs5453840_1 GI:5453840
Saccharomyces cerevisiae (Sce) YGL078c
(S000003046)		 GI:6321360 P20447
Saccharomyces cerevisiae (Sce) YNL112w
(S000005056)		 GI:6324217 P24783
Schizosaccharomyces pombe (Spo) SPBC17D1.06 GI:19113180 Q10202
Schizosaccharomyces pombe (Spo) SPBP8B7.16c GI:19113315 P24782
Encephalitozoon cuniculi (Ecu) ECU05g1270 GI:19173667 Q8SRV1
Encephalitozoon cuniculi (Ecu) ECU08g1080 GI:19173435 Q8SRB2
Arabidopsis thaliana (Ath) At1g31970 GI:15222526
Arabidopsis thaliana (Ath) At1g55150 GI:15221998
Arabidopsis thaliana (Ath) At3g01540 GI:3149952
Arabidopsis thaliana (Ath) At3g06480 GI:15230730
Arabidopsis thaliana (Ath) At3g06980 GI:15231353
Arabidopsis thaliana (Ath) At3g22310 GI:15228722
Arabidopsis thaliana (Ath) At3g22330 GI:15228726
Arabidopsis thaliana (Ath) At4g09730 GI:15234028
Arabidopsis thaliana (Ath) At5g14610 GI:15241445
Arabidopsis thaliana (Ath) At5g62190 GI:15241726
Arabidopsis thaliana (Ath) At5g63120 GI:10177293
Caenorhabditis elegans (Cel) CE18785
(WBGene00010260)		 GI:17561644
Drosophila melanogaster (Dme) 7290730 GI:7290730 Q9W3Y5
Drosophila melanogaster (Dme) 7290853
(FBgn0029979)		 GI:18857967
Drosophila melanogaster (Dme) 7295314 GI:7295314
Drosophila melanogaster (Dme) 7296646 GI:7296646
Homo sapiens (Hsa) Hs13129006
(DDX50)		 GI:13129006 Q9NTA9
Homo sapiens (Hsa) Hs13775232 GI:13775232
Homo sapiens (Hsa) Hs13787209 GI:13787209
Homo sapiens (Hsa) Hs20477215 GI:20477215
Homo sapiens (Hsa) Hs22041399 GI:22041399
Homo sapiens (Hsa) Hs22044561 GI:22044561
Homo sapiens (Hsa) Hs4758138
(DDX5)		 GI:4758138 P17844
Homo sapiens (Hsa) Hs5453840_1 GI:5453840
Saccharomyces cerevisiae (Sce) YGL078c
(S000003046)		 GI:6321360 P20447
Saccharomyces cerevisiae (Sce) YNL112w
(S000005056)		 GI:6324217 P24783
Schizosaccharomyces pombe (Spo) SPBC17D1.06 GI:19113180 Q10202
Schizosaccharomyces pombe (Spo) SPBP8B7.16c GI:19113315 P24782
Encephalitozoon cuniculi (Ecu) ECU05g1270 GI:19173667 Q8SRV1
Encephalitozoon cuniculi (Ecu) ECU08g1080 GI:19173435 Q8SRB2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g55150
At5g14610
GO:0005618 cell wall C
IDA
AthAt3g22330
GO:0005634 nucleus C
IDA
AthAt5g62190
SceS000005056
SpoSPBP8B7.16c
ISS
SpoSPBP8B7.16c
NAS
HsaDDX5
GO:0005730 nucleolus C
IDA
AthAt5g62190
At3g22330
SceS000003046
SpoSPBC17D1.06
SPBP8B7.16c
ISS
SpoSPBC17D1.06
GO:0005737 cytoplasm C
IDA
SceS000005056
ISS
SpoSPBP8B7.16c
GO:0005739 mitochondrion C
IDA
AthAt3g22330
SceS000005056
GO:0005773 vacuole C
IDA
AthAt3g06480
GO:0005829 cytosol C
IDA
SpoSPBP8B7.16c
GO:0009507 chloroplast C
IDA
AthAt3g06980
At4g09730
GO:0030529 ribonucleoprotein complex C
IDA
HsaDDX5
GO:0043234 protein complex C
IDA
AthAt3g22330
At3g22310
GO:0003677 DNA binding F
IDA
AthAt3g22310
GO:0003723 RNA binding F
IDA
AthAt3g22310
GO:0003724 RNA helicase activity F
ISS
DmeFBgn0029979
SceS000005056
NAS
HsaDDX5
GO:0004004 ATP-dependent RNA helicase activity F
IDA
AthAt3g01540
ISS
SpoSPBC17D1.06
SPBP8B7.16c
RCA
SceS000005056
TAS
SceS000003046
GO:0005515 protein binding F
IPI
HsaDDX5
GO:0005524 ATP binding F
ISS
AthAt5g14610
At3g06480
SpoSPBP8B7.16c
SPBC17D1.06
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g06480
At5g63120
At3g06980
At4g09730
At5g14610
At1g31970
At1g55150
At5g62190
At3g22310
At3g22330
RCA
SceS000005056
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000003046
RCA
SceS000005056
GO:0016887 ATPase activity F
IDA
AthAt4g09730
At3g01540
RCA
SceS000005056
GO:0017151 DEAD/H-box RNA helicase binding F
ISS
AthAt5g62190
GO:0042623 ATPase activity, coupled F
RCA
SceS000005056
GO:0070035 purine NTP-dependent helicase activity F
RCA
SceS000005056
GO:0070180 LSU rRNA binding F
IDA
AthAt4g09730
GO:0000003 reproduction P
IMP
CelWBGene00010260
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000003046
ISS
SpoSPBC17D1.06
GO:0000184 nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay		 P
IPI
SceS000005056
ISS
SpoSPBP8B7.16c
GO:0000373 Group II intron splicing P
IMP
AthAt3g22330
GO:0002119 nematode larval development P
IMP
CelWBGene00010260
GO:0006364 rRNA processing P
IMP
SceS000003046
S000005056
ISS
SpoSPBC17D1.06
SPBP8B7.16c
GO:0006417 regulation of translation P
RCA
SceS000005056
GO:0008150 biological_process P
ND
AthAt3g06480
At3g06980
GO:0009409 response to cold P
IEP
AthAt3g22330
At3g22310
GO:0009414 response to water deprivation P
IMP
AthAt3g22310
GO:0009451 RNA modification P
RCA
SceS000003046
GO:0009651 response to salt stress P
IMP
AthAt3g22310
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010260
GO:0016049 cell growth P
NAS
HsaDDX5
GO:0016070 RNA metabolic process P
TAS
AthAt5g62190
GO:0040007 growth P
IMP
CelWBGene00010260
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010260

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
31631

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) dbp3
(SPBC17D1.06)		 GI:19113180 Q10202
Saccharomyces cerevisiae (Sce) DBP3
(S000003046)		 GI:6321360 P20447
Kluyveromyces lactis (Kla) KLLA0C15499g GI:50305865
Eremothecium gossypii (Ego) AGOS_AFL080W GI:45198439
Magnaporthe grisea (Mgr) MGG_08272 GI:145613028
Neurospora crassa (Ncr) NCU05782.1 GI:32410313
Arabidopsis thaliana (Ath) STRS1 GI:15222526
Oryza sativa (Osa) Os07g0301200 GI:115471651


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000003046
SpoSPBC17D1.06
ISS
SpoSPBC17D1.06
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC17D1.06
TAS
SceS000003046
GO:0005524 ATP binding F
ISS
SpoSPBC17D1.06
GO:0008026 ATP-dependent helicase activity F
ISS
AthSTRS1
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000003046
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000003046
ISS
SpoSPBC17D1.06
GO:0006364 rRNA processing P
IMP
SceS000003046
ISS
SpoSPBC17D1.06
GO:0009451 RNA modification P
RCA
SceS000003046

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_9346

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3113 AFL080W
Arabidopsis thaliana (Ath) ath3344 At1g31970.1
Candida glabrata (Cgl) cgl2207 CAGL0H03377g
Cryptococcus neoformans (Cne) cne3333 167.m05791
Debaryomyces hansenii (Dha) dha173 DEHA0A03883g
Kluyveromyces lactis (Kla) kla1892 KLLA0C15499g
Neurospora crassa (Ncr) ncr5620 NCU05782.2
Oryza sativa (Osa) osa78671 7500.m00139
Saccharomyces cerevisiae (Sce) sce2172 YGL078C
(S000003046)
Schizosaccharomyces pombe (Spo) spo393 SPBC17D1.06 Q10202
Yarrowia lipolytica (Yli) yli3103 YALI0D09449g