YOGY Home YOGY Help

Search term: YGL112C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TAF6
SGD link S000003080
Alternative ID YGL112C
Description Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4
Synonyms YGL112C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2549 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g04950 GI:15220358
Arabidopsis thaliana (Ath) At1g54360 GI:15221790
Caenorhabditis elegans (Cel) CE27222
(WBGene00006387)		 GI:17536589 Q9GZI6
Caenorhabditis elegans (Cel) CE27602
(WBGene00021363)		 GI:17543084 Q965Y0
Drosophila melanogaster (Dme) 7293771 GI:17737645
Drosophila melanogaster (Dme) 7296734 GI:7296734
Homo sapiens (Hsa) Hs21536355
(TAF6)		 GI:21536355 P49848
Homo sapiens (Hsa) Hs21536357 GI:21536357 P49848
Homo sapiens (Hsa) Hs5032147 GI:5032147 P49848
Homo sapiens (Hsa) Hs5453844
(TAF6L)		 GI:5453844 Q9Y6J9
Saccharomyces cerevisiae (Sce) YGL112c
(S000003080)		 GI:6321326 P53040
Schizosaccharomyces pombe (Spo) SPCC16C4.18c GI:19075428 O74462
Encephalitozoon cuniculi (Ecu) ECU10g1120 GI:19074721 Q8SR29


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
TAS
HsaTAF6L
GO:0000124 SAGA complex C
IDA
SceS000003080
SpoSPCC16C4.18c
GO:0000790 nuclear chromatin C
IC
SpoSPCC16C4.18c
GO:0005634 nucleus C
IDA
HsaTAF6
SpoSPCC16C4.18c
ISS
AthAt1g04950
GO:0005654 nucleoplasm C
EXP
HsaTAF6
GO:0005669 transcription factor TFIID complex C
IDA
HsaTAF6
SceS000003080
SpoSPCC16C4.18c
GO:0005737 cytoplasm C
IDA
HsaTAF6
GO:0005829 cytosol C
IDA
SpoSPCC16C4.18c
GO:0030914 STAGA complex C
IDA
HsaTAF6L
GO:0033276 transcription factor TFTC complex C
IDA
HsaTAF6
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000003080
GO:0071339 MLL1 complex C
IDA
HsaTAF6
GO:0003677 DNA binding F
IDA
HsaTAF6
GO:0003682 chromatin binding F
IDA
SceS000003080
GO:0003700 transcription factor activity F
IDA
HsaTAF6
TAF6
GO:0003713 transcription coactivator activity F
IDA
HsaTAF6L
GO:0004402 histone acetyltransferase activity F
IDA
HsaTAF6L
GO:0005515 protein binding F
IPI
HsaTAF6L
TAF6
SpoSPCC16C4.18c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000003080
NAS
HsaTAF6
GO:0016986 transcription initiation factor
activity		 F
IDA
HsaTAF6
ISS
AthAt1g04950
GO:0032947 protein complex scaffold F
IMP
SceS000003080
GO:0000003 reproduction P
IMP
CelWBGene00021363
GO:0006338 chromatin remodeling P
IC
SpoSPCC16C4.18c
TAS
HsaTAF6L
GO:0006352 transcription initiation P
ISS
AthAt1g04950
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
HsaTAF6L
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaTAF6
IDA
HsaTAF6
ISS
SpoSPCC16C4.18c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaTAF6
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000003080
GO:0008285 negative regulation of cell proliferation P
IDA
HsaTAF6
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00021363
GO:0009860 pollen tube growth P
IMP
AthAt1g04950
GO:0016568 chromatin modification P
IDA
SceS000003080
GO:0016573 histone acetylation P
IC
SpoSPCC16C4.18c
IDA
SceS000003080
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000003080
GO:0043966 histone H3 acetylation P
IDA
HsaTAF6L
GO:0045786 negative regulation of cell cycle P
IDA
HsaTAF6
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000003080

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
7561

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) TAF6 GI:21536355 P49848
Canis familiaris (Cfa) TAF6 GI:73957898
Mus musculus (Mmu) Taf6
(MGI:109129)		 GI:6678215 Q62311
Rattus norvegicus (Rno) Taf6
(RGD:1311608)		 GI:34871482
Gallus gallus (Gga) TAF6 GI:118106861
Drosophila melanogaster (Dme) Taf6
(FBgn0010417)		 GI:24666846
Anopheles gambiae (Aga) AgaP_AGAP004254 GI:158291656
Caenorhabditis elegans (Cel) taf-6.1
(CE27222;
WBGene00006387)		 GI:17536589 Q9GZI6
Schizosaccharomyces pombe (Spo) taf50 GI:19075428
Saccharomyces cerevisiae (Sce) TAF6
(S000003080)		 GI:6321326 P53040
Kluyveromyces lactis (Kla) KLLA0F10659g GI:50311083
Eremothecium gossypii (Ego) AGOS_AFL020W GI:45198499
Magnaporthe grisea (Mgr) MGG_04877 GI:39940726
Neurospora crassa (Ncr) NCU07757.1 GI:32415970


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000003080
GO:0005634 nucleus C
IDA
HsaTAF6
MmuMGI:109129
NAS
DmeFBgn0010417
GO:0005654 nucleoplasm C
EXP
HsaTAF6
GO:0005669 transcription factor TFIID complex C
IDA
HsaTAF6
SceS000003080
IPI
DmeFBgn0010417
ISO
MmuMGI:109129
ISS
DmeFBgn0010417
GO:0005737 cytoplasm C
IDA
HsaTAF6
GO:0033276 transcription factor TFTC complex C
IDA
HsaTAF6
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000003080
GO:0071339 MLL1 complex C
IDA
HsaTAF6
GO:0003677 DNA binding F
IDA
HsaTAF6
MmuMGI:109129
GO:0003682 chromatin binding F
IDA
SceS000003080
GO:0003700 transcription factor activity F
IDA
HsaTAF6
TAF6
GO:0005515 protein binding F
IPI
HsaTAF6
MmuMGI:109129
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000003080
ISS
DmeFBgn0010417
NAS
HsaTAF6
GO:0016986 transcription initiation factor
activity		 F
IDA
HsaTAF6
GO:0032947 protein complex scaffold F
IMP
SceS000003080
GO:0006355 regulation of transcription, DNA-dependent P
NAS
DmeFBgn0010417
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaTAF6
IDA
HsaTAF6
ISS
DmeFBgn0010417
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaTAF6
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000003080
GO:0008150 biological_process P
ND
MmuMGI:109129
GO:0008285 negative regulation of cell proliferation P
IDA
HsaTAF6
GO:0016568 chromatin modification P
IDA
SceS000003080
GO:0016573 histone acetylation P
IDA
SceS000003080
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000003080
GO:0045786 negative regulation of cell cycle P
IDA
HsaTAF6
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000003080

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2510

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6785 ENSANGP00000013395
Ashbya gossypii (Ago) ago3173 AFL020W
Arabidopsis thaliana (Ath) ath442 At1g04950.1
Arabidopsis thaliana (Ath) ath443 At1g04950.2
Arabidopsis thaliana (Ath) ath4749 At1g54360.1
Arabidopsis thaliana (Ath) ath4750 At1g54360.2
Caenorhabditis elegans (Cel) cel17275 W09B6.2
(CE27222;
WBGene00006387)
Candida glabrata (Cgl) cgl1540 CAGL0F07249g
Candida glabrata (Cgl) cgl1546 CAGL0F07381g
Cryptococcus neoformans (Cne) cne2904 167.m03183
Dictyostelium discoideum (Ddi) ddi12858 DDB0231094
Debaryomyces hansenii (Dha) dha4602 DEHA0F04785g
Drosophila melanogaster (Dme) dme10241 CG32211-PA
(FBgn0010417)
Danio rerio (Dre) dre22847 ENSDARP00000042900
(taf6)		 Q66HZ5
Encephalitozoon cuniculi (Ecu) ecu637 19074721
Takifugu rubripes (Fru) fru29979 SINFRUP00000134329
Takifugu rubripes (Fru) fru29980 SINFRUP00000170682
Homo sapiens (Hsa) hsa29084 ENSP00000262944
Homo sapiens (Hsa) hsa29083 ENSP00000344537
(TAF6)		 P49848-1
Kluyveromyces lactis (Kla) kla4565 KLLA0F10659g
Mus musculus (Mmu) mmu21157 ENSMUSP00000048016
(MGI:109129)		 Q62311
Neurospora crassa (Ncr) ncr7553 NCU07757.2
Oryza sativa (Osa) osa35232 4725.m00141
Rattus norvegicus (Rno) rno8235 ENSRNOP00000001829
(RGD:1311608)		 Q63801
Saccharomyces cerevisiae (Sce) sce2206 YGL112C
(S000003080)
Schizosaccharomyces pombe (Spo) spo38 SPCC16C4.18c O74462
Yarrowia lipolytica (Yli) yli1931 YALI0C05346g