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Search term: YGL135W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL1B
SGD link S000003103
Alternative ID YGL135W
Description N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Ap and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal
Synonyms YGL135W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1570 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60S ribosomal protein L10A

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g08360 GI:15223201
Arabidopsis thaliana (Ath) At2g27530 GI:15225890
Arabidopsis thaliana (Ath) At5g22440 GI:15242248
Caenorhabditis elegans (Cel) CE25552
(WBGene00004412)		 GI:17510479 Q9N4I4
Caenorhabditis elegans (Cel) CE28379 GI:17510477 Q9N4I4
Drosophila melanogaster (Dme) 7294664 GI:7294664
Drosophila melanogaster (Dme) 7299947 GI:7299947
Homo sapiens (Hsa) Hs15431288 GI:13592009
Homo sapiens (Hsa) Hs17454142 GI:17454142
Homo sapiens (Hsa) Hs17466229 GI:17466229
Homo sapiens (Hsa) Hs18547924 GI:18547924
Homo sapiens (Hsa) Hs18561645 GI:18561645
Homo sapiens (Hsa) Hs20562439 GI:20562439
Homo sapiens (Hsa) Hs22046576 GI:22046576
Homo sapiens (Hsa) Hs22048421 GI:22048421
Homo sapiens (Hsa) Hs22061138 GI:22061138
Saccharomyces cerevisiae (Sce) YGL135w
(S000003103)		 GI:6321303 P53030
Saccharomyces cerevisiae (Sce) YPL220w
(S000006141)		 GI:6321303 P53030
Schizosaccharomyces pombe (Spo) SPBC30D10.18c GI:19113059 O14363
Schizosaccharomyces pombe (Spo) SPCC1183.08c GI:19075391 O74836
Encephalitozoon cuniculi (Ecu) ECU05g0600 GI:19173599 Q8SRY5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
AthAt5g22440
GO:0005829 cytosol C
IDA
SpoSPBC30D10.18c
SPCC1183.08c
GO:0005840 ribosome C
ISS
AthAt1g08360
At5g22440
GO:0005886 plasma membrane C
IDA
AthAt1g08360
GO:0015934 large ribosomal subunit C
ISS
AthAt2g27530
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g27530
At5g22440
At1g08360
ISS
SpoSPCC1183.08c
SPBC30D10.18c
TAS
SceS000006141
S000003103
GO:0022626 cytosolic ribosome C
IDA
AthAt2g27530
At5g22440
At1g08360
GO:0003735 structural constituent of ribosome F
ISS
AthAt2g27530
At1g08360
At5g22440
SpoSPBC30D10.18c
SPCC1183.08c
TAS
SceS000003103
S000006141
GO:0000003 reproduction P
IMP
CelWBGene00004412
GO:0002119 nematode larval development P
IMP
CelWBGene00004412
GO:0006412 translation P
ISS
AthAt5g22440
At2g27530
At1g08360
SpoSPBC30D10.18c
SPCC1183.08c
TAS
SceS000006141
S000003103
GO:0006417 regulation of translation P
RCA
SceS000006141
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004412
GO:0009955 adaxial/abaxial pattern formation P
IGI
AthAt2g27530
GO:0040007 growth P
IMP
CelWBGene00004412
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004412
GO:0048569 post-embryonic organ development P
IGI
AthAt2g27530

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68543

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPL10A GI:15431288
Pan troglodytes (Ptr) RPL10A GI:114607013
Canis familiaris (Cfa) RPL10A GI:73972666
Rattus norvegicus (Rno) LOC680700 GI:109475435
Gallus gallus (Gga) RPL10A GI:50760435
Drosophila melanogaster (Dme) RpL10Ab
(FBgn0036213)		 GI:24662946
Anopheles gambiae (Aga) AgaP_AGAP011298 GI:158287288
Caenorhabditis elegans (Cel) rpl-1
(CE25552;
WBGene00004412)		 GI:17510479 Q9N4I4
Schizosaccharomyces pombe (Spo) rpl1-1 GI:19075391
Schizosaccharomyces pombe (Spo) rpl1-2 GI:19113059
Saccharomyces cerevisiae (Sce) RPL1B
(S000003103)		 GI:6321303 P53030
Saccharomyces cerevisiae (Sce) RPL1A
(S000006141)		 GI:6325036
Kluyveromyces lactis (Kla) KLLA0B02002g GI:50303357
Eremothecium gossypii (Ego) AGOS_AFL116W GI:45198405
Magnaporthe grisea (Mgr) MGG_04696 GI:145614482
Neurospora crassa (Ncr) NCU00294.1 GI:32403534
Arabidopsis thaliana (Ath) AT5G22440 GI:145334533
Arabidopsis thaliana (Ath) AT1G08360 GI:30680605
Arabidopsis thaliana (Ath) PGY1 GI:30683566
Oryza sativa (Osa) Os01g0860300 GI:115441181
Oryza sativa (Osa) Os02g0321900 GI:115445821
Plasmodium falciparum (Pfa) PF14_0391 GI:124809402


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
AthAt5g22440
GO:0005811 lipid particle C
IDA
DmeFBgn0036213
GO:0005829 cytosol C
EXP
HsaRPL10A
GO:0005840 ribosome C
ISS
AthAt1g08360
At5g22440
GO:0005886 plasma membrane C
IDA
AthAt1g08360
GO:0015934 large ribosomal subunit C
ISS
AthPGY1
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthPGY1
At5g22440
At1g08360
ISS
DmeFBgn0036213
PfaPF14_0391
TAS
SceS000006141
S000003103
GO:0022626 cytosolic ribosome C
IDA
AthPGY1
At5g22440
At1g08360
GO:0003735 structural constituent of ribosome F
ISS
AthAt1g08360
At5g22440
PGY1
DmeFBgn0036213
TAS
SceS000003103
S000006141
GO:0000003 reproduction P
IMP
CelWBGene00004412
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0036213
GO:0002119 nematode larval development P
IMP
CelWBGene00004412
GO:0006412 translation P
ISS
AthPGY1
At5g22440
At1g08360
DmeFBgn0036213
TAS
SceS000006141
S000003103
GO:0006414 translational elongation P
EXP
HsaRPL10A
GO:0006417 regulation of translation P
RCA
SceS000006141
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0036213
GO:0009653 anatomical structure morphogenesis P
TAS
HsaRPL10A
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004412
GO:0009955 adaxial/abaxial pattern formation P
IGI
AthPGY1
GO:0040007 growth P
IMP
CelWBGene00004412
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004412
GO:0048569 post-embryonic organ development P
IGI
AthPGY1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_986

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8357 ENSANGP00000015019
Ashbya gossypii (Ago) ago3079 AFL116W
Arabidopsis thaliana (Ath) ath841 At1g08360.1
Arabidopsis thaliana (Ath) ath9709 At2g27530.1
Arabidopsis thaliana (Ath) ath9710 At2g27530.2
Arabidopsis thaliana (Ath) ath24475 At5g22440.1
Caenorhabditis elegans (Cel) cel20541 Y71F9AL.13a
(CE25552;
WBGene00004412)
Candida glabrata (Cgl) cgl2456 CAGL0H08976g
Cryptococcus neoformans (Cne) cne3194 167.m03537
Dictyostelium discoideum (Ddi) ddi12125 DDB0229949
Debaryomyces hansenii (Dha) dha1634 DEHA0C04642g
Drosophila melanogaster (Dme) dme9144 CG7283-PA
(FBgn0036213)
Danio rerio (Dre) dre22674 ENSDARP00000043977
Danio rerio (Dre) dre22484 ENSDARP00000045001
Encephalitozoon cuniculi (Ecu) ecu1161 19173599
Takifugu rubripes (Fru) fru32276 SINFRUP00000154302
Gallus gallus (Gga) gga13573 ENSGALP00000004159
(RPL10A)		 Q6EE62
Homo sapiens (Hsa) hsa22706 ENSP00000346117
Homo sapiens (Hsa) hsa27006 ENSP00000355258
Kluyveromyces lactis (Kla) kla618 KLLA0B02002g
Mus musculus (Mmu) mmu11277 ENSMUSP00000048469
(MGI:1343877)		 Q3U561
Mus musculus (Mmu) mmu464 ENSMUSP00000071789
Neurospora crassa (Ncr) ncr280 NCU00294.2
Oryza sativa (Osa) osa16609 3084.m00177
Oryza sativa (Osa) osa33181 4628.m00161
Oryza sativa (Osa) osa42338 5149.m00144
Oryza sativa (Osa) osa44824 5623.m00459
Oryza sativa (Osa) osa44849 5623.m00497
Oryza sativa (Osa) osa49637 5742.m00191
Plasmodium falciparum (Pfa) pfa1842 PF14_0391
Rattus norvegicus (Rno) rno17592 ENSRNOP00000000603
(RGD:620497)		 P62907
Saccharomyces cerevisiae (Sce) sce2230 YGL135W
(S000003103)
Saccharomyces cerevisiae (Sce) sce6382 YPL220W
(S000006141)
Schizosaccharomyces pombe (Spo) spo530 SPBC30D10.18c O14363
Schizosaccharomyces pombe (Spo) spo3596 SPCC1183.08c O74836
Yarrowia lipolytica (Yli) yli5187 YALI0E31911g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1343877
GO:0005730 nucleolus C
IDA
AthAt5g22440
GO:0005739 mitochondrion C
IDA
MmuMGI:1343877
GO:0005811 lipid particle C
IDA
DmeFBgn0036213
GO:0005829 cytosol C
IDA
SpoSPBC30D10.18c
SPCC1183.08c
GO:0005840 ribosome C
ISS
AthAt1g08360
At5g22440
GO:0005886 plasma membrane C
IDA
AthAt1g08360
GO:0015934 large ribosomal subunit C
ISS
AthAt2g27530
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g27530
At5g22440
At1g08360
ISS
DmeFBgn0036213
PfaPF14_0391
SpoSPCC1183.08c
SPBC30D10.18c
TAS
SceS000006141
S000003103
GO:0022626 cytosolic ribosome C
IDA
AthAt2g27530
At5g22440
At1g08360
GO:0003674 molecular_function F
ND
MmuMGI:1343877
GO:0003735 structural constituent of ribosome F
ISS
AthAt2g27530
At1g08360
At5g22440
DmeFBgn0036213
SpoSPBC30D10.18c
SPCC1183.08c
TAS
SceS000003103
S000006141
GO:0000003 reproduction P
IMP
CelWBGene00004412
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0036213
GO:0002119 nematode larval development P
IMP
CelWBGene00004412
GO:0006412 translation P
ISS
AthAt5g22440
At2g27530
At1g08360
DmeFBgn0036213
SpoSPBC30D10.18c
SPCC1183.08c
TAS
SceS000006141
S000003103
GO:0006417 regulation of translation P
RCA
SceS000006141
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0036213
GO:0008150 biological_process P
ND
MmuMGI:1343877
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004412
GO:0009955 adaxial/abaxial pattern formation P
IGI
AthAt2g27530
GO:0040007 growth P
IMP
CelWBGene00004412
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004412
GO:0048569 post-embryonic organ development P
IGI
AthAt2g27530

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC30D10.18c
(O14363)		 YGL135W
(S000003103)
SPCC1183.08c
(O74836)		 YGL135W
(S000003103)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPBC30D10.18c
SPCC1183.08c
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPCC1183.08c
SPBC30D10.18c
TAS
SceS000003103
GO:0003735 structural constituent of ribosome F
ISS
SpoSPBC30D10.18c
SPCC1183.08c
TAS
SceS000003103
GO:0006412 translation P
ISS
SpoSPBC30D10.18c
SPCC1183.08c
TAS
SceS000003103

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s.khadayate@ucl.ac.uk