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Search term: YGL137W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SEC27
SGD link S000003105
Alternative ID YGL137W
Description Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP
Synonyms YGL137W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0276 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vesicle coat complex COPI, beta' subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g52360 GI:15218215
Arabidopsis thaliana (Ath) At1g79990 GI:15220031
Arabidopsis thaliana (Ath) At3g15980 GI:15233253
Caenorhabditis elegans (Cel) CE09135_1 GI:17506481 O17742
Caenorhabditis elegans (Cel) CE18673
(WBGene00009542)		 GI:17540286 Q20168
Caenorhabditis elegans (Cel) CE20251_2 GI:17555848 Q9XWU3
Drosophila melanogaster (Dme) 7298053 GI:7298053
Homo sapiens (Hsa) Hs4758032
(COPB2)		 GI:4758032 P35606
Saccharomyces cerevisiae (Sce) YGL137w
(S000003105)		 GI:6321301 P41811
Schizosaccharomyces pombe (Spo) SPBC244.03 GI:19113604
Encephalitozoon cuniculi (Ecu) ECU08g1250 GI:19173452 Q8SRA6
Arabidopsis thaliana (Ath) At1g52360 GI:15218215
Arabidopsis thaliana (Ath) At1g79990 GI:15220031
Arabidopsis thaliana (Ath) At3g15980 GI:15233253
Caenorhabditis elegans (Cel) CE09135_1 GI:17506481 O17742
Caenorhabditis elegans (Cel) CE18673
(WBGene00009542)		 GI:17540286 Q20168
Caenorhabditis elegans (Cel) CE20251_2 GI:17555848 Q9XWU3
Drosophila melanogaster (Dme) 7298053 GI:7298053
Homo sapiens (Hsa) Hs4758032
(COPB2)		 GI:4758032 P35606
Saccharomyces cerevisiae (Sce) YGL137w
(S000003105)		 GI:6321301 P41811
Schizosaccharomyces pombe (Spo) SPBC244.03 GI:19113604
Encephalitozoon cuniculi (Ecu) ECU08g1250 GI:19173452 Q8SRA6
Arabidopsis thaliana (Ath) At1g52360 GI:15218215
Arabidopsis thaliana (Ath) At1g79990 GI:15220031
Arabidopsis thaliana (Ath) At3g15980 GI:15233253
Caenorhabditis elegans (Cel) CE09135_1 GI:17506481 O17742
Caenorhabditis elegans (Cel) CE18673
(WBGene00009542)		 GI:17540286 Q20168
Caenorhabditis elegans (Cel) CE20251_2 GI:17555848 Q9XWU3
Drosophila melanogaster (Dme) 7298053 GI:7298053
Homo sapiens (Hsa) Hs4758032
(COPB2)		 GI:4758032 P35606
Saccharomyces cerevisiae (Sce) YGL137w
(S000003105)		 GI:6321301 P41811
Schizosaccharomyces pombe (Spo) SPBC244.03 GI:19113604
Encephalitozoon cuniculi (Ecu) ECU08g1250 GI:19173452 Q8SRA6


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
EXP
HsaCOPB2
GO:0030126 COPI vesicle coat C
IDA
HsaCOPB2
IGI
SceS000003105
ISS
AthAt1g79990
At1g52360
At3g15980
SceS000003105
GO:0003674 molecular_function F
ND
SceS000003105
GO:0005515 protein binding F
IPI
HsaCOPB2
GO:0000003 reproduction P
IMP
CelWBGene00008476
WBGene00009542
GO:0002119 nematode larval development P
IMP
CelWBGene00008476
WBGene00009542
GO:0006886 intracellular protein transport P
IMP
CelWBGene00009542
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000003105
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
EXP
HsaCOPB2
IMP
SceS000003105
TAS
HsaCOPB2
GO:0006891 intra-Golgi vesicle-mediated transport P
IDA
HsaCOPB2
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009542
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008476
WBGene00009542
GO:0016044 cellular membrane organization P
EXP
HsaCOPB2
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00008476
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000003105
IPI
SceS000003105
GO:0032940 secretion by cell P
IMP
CelWBGene00009542
GO:0040007 growth P
IMP
CelWBGene00008476
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00008476
GO:0040011 locomotion P
IMP
CelWBGene00008476
GO:0048205 COPI coating of Golgi vesicle P
EXP
HsaCOPB2
GO:0048599 oocyte development P
IMP
CelWBGene00009542

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3499

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) COPB2 GI:4758032 P35606
Pan troglodytes (Ptr) COPB2 GI:114589653
Canis familiaris (Cfa) COPB2 GI:73990636
Mus musculus (Mmu) Copb2
(MGI:1354962)		 GI:29789080 O55029
Gallus gallus (Gga) COPB2 GI:118094989
Drosophila melanogaster (Dme) beta'Cop GI:24584107
Anopheles gambiae (Aga) AgaP_AGAP004798 GI:158297839
Caenorhabditis elegans (Cel) F38E11.5
(CE18673;
WBGene00009542)		 GI:17540286 Q20168
Schizosaccharomyces pombe (Spo) sec27
(SPBC16C6.13c)		 GI:19113604 O42937
Saccharomyces cerevisiae (Sce) SEC27
(S000003105)		 GI:6321301 P41811
Kluyveromyces lactis (Kla) KLLA0B01958g GI:50303353
Eremothecium gossypii (Ego) AGOS_AFL118W GI:45198403
Magnaporthe grisea (Mgr) MGG_10504 GI:145615762
Neurospora crassa (Ncr) NCU07319.1 GI:32414251
Arabidopsis thaliana (Ath) AT3G15980 GI:30683862
Arabidopsis thaliana (Ath) AT1G52360 GI:15218215
Arabidopsis thaliana (Ath) AT1G79990 GI:30699476
Oryza sativa (Osa) Os06g0143900 GI:115466360
Plasmodium falciparum (Pfa) PFI0290c GI:124506671


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISO
MmuMGI:1354962
GO:0005634 nucleus C
IDA
SpoSPBC16C6.13c
GO:0005794 Golgi apparatus C
IDA
MmuMGI:1354962
ISA
MmuMGI:1354962
GO:0005829 cytosol C
EXP
HsaCOPB2
IDA
SpoSPBC16C6.13c
GO:0030126 COPI vesicle coat C
IDA
HsaCOPB2
IGI
SceS000003105
ISO
MmuMGI:1354962
ISS
AthAt1g79990
At1g52360
At3g15980
SceS000003105
SpoSPBC16C6.13c
NAS
Dmebeta'Cop
GO:0003674 molecular_function F
ND
SceS000003105
SpoSPBC16C6.13c
GO:0005080 protein kinase C binding F
ISO
MmuMGI:1354962
GO:0005515 protein binding F
IPI
HsaCOPB2
GO:0000003 reproduction P
IMP
CelWBGene00009542
GO:0002119 nematode larval development P
IMP
CelWBGene00009542
GO:0006886 intracellular protein transport P
IC
SpoSPBC16C6.13c
IMP
CelWBGene00009542
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000003105
ISS
SpoSPBC16C6.13c
NAS
Dmebeta'Cop
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
EXP
HsaCOPB2
IMP
SceS000003105
ISS
SpoSPBC16C6.13c
NAS
Dmebeta'Cop
TAS
HsaCOPB2
GO:0006891 intra-Golgi vesicle-mediated transport P
IDA
HsaCOPB2
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009542
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009542
GO:0010883 regulation of lipid storage P
IDA
Dmebeta'Cop
GO:0016044 cellular membrane organization P
EXP
HsaCOPB2
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000003105
IPI
SceS000003105
ISS
SpoSPBC16C6.13c
GO:0032940 secretion by cell P
IMP
CelWBGene00009542
GO:0048193 Golgi vesicle transport P
ISO
MmuMGI:1354962
GO:0048194 Golgi vesicle budding P
NAS
Dmebeta'Cop
GO:0048205 COPI coating of Golgi vesicle P
EXP
HsaCOPB2
GO:0048599 oocyte development P
IMP
CelWBGene00009542

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1115

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga133 ENSANGP00000010744
Ashbya gossypii (Ago) ago3077 AFL118W
Arabidopsis thaliana (Ath) ath4515 At1g52360.1
Arabidopsis thaliana (Ath) ath7379 At1g79990.1
Arabidopsis thaliana (Ath) ath13829 At3g15980.1
Arabidopsis thaliana (Ath) ath13830 At3g15980.2
Arabidopsis thaliana (Ath) ath13831 At3g15980.3
Caenorhabditis elegans (Cel) cel8527 F38E11.5
(CE18673;
WBGene00009542)
Caenorhabditis elegans (Cel) cel18678 Y41C4A.11
(CE20251;
WBGene00012757)
Candida glabrata (Cgl) cgl2454 CAGL0H08932g
Cryptococcus neoformans (Cne) cne5071 186.m04003
Dictyostelium discoideum (Ddi) ddi5149 DDB0205348
Debaryomyces hansenii (Dha) dha1632 DEHA0C04598g
Drosophila melanogaster (Dme) dme2269 CG6699-PA
(FBgn0025724)
Danio rerio (Dre) dre11461 ENSDARP00000006997
(copb2)		 Q6JWU7
Danio rerio (Dre) dre11460 ENSDARP00000044330
(LOC562080)
Encephalitozoon cuniculi (Ecu) ecu283 19173452
Takifugu rubripes (Fru) fru10698 SINFRUP00000155598
Gallus gallus (Gga) gga23259 ENSGALP00000008578
(COPB2)
Homo sapiens (Hsa) hsa23227 ENSP00000329419
(COPB2)		 P35606
Kluyveromyces lactis (Kla) kla616 KLLA0B01958g
Mus musculus (Mmu) mmu28118 ENSMUSP00000035033
(MGI:1354962)		 O55029
Neurospora crassa (Ncr) ncr7125 NCU07319.2
Oryza sativa (Osa) osa5721 2427.m00177
Oryza sativa (Osa) osa5873 2430.m00169
Oryza sativa (Osa) osa5875 2430.m00170
Oryza sativa (Osa) osa15151 3027.m00137
Oryza sativa (Osa) osa15158 3027.m00161
Plasmodium falciparum (Pfa) pfa4525 PFI0290c
Saccharomyces cerevisiae (Sce) sce2232 YGL137W
(S000003105)
Schizosaccharomyces pombe (Spo) spo3007 SPBC16C6.13c O42937
Yarrowia lipolytica (Yli) yli2587 YALI0C21802g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISO
MmuMGI:1354962
GO:0005634 nucleus C
IDA
SpoSPBC16C6.13c
GO:0005794 Golgi apparatus C
IDA
MmuMGI:1354962
ISA
MmuMGI:1354962
GO:0005829 cytosol C
IDA
SpoSPBC16C6.13c
GO:0030126 COPI vesicle coat C
IGI
SceS000003105
ISO
MmuMGI:1354962
ISS
AthAt1g79990
At1g52360
At3g15980
SceS000003105
SpoSPBC16C6.13c
NAS
DmeFBgn0025724
GO:0003674 molecular_function F
ND
SceS000003105
SpoSPBC16C6.13c
GO:0005080 protein kinase C binding F
ISO
MmuMGI:1354962
GO:0000003 reproduction P
IMP
CelWBGene00009542
GO:0002119 nematode larval development P
IMP
CelWBGene00009542
GO:0006886 intracellular protein transport P
IC
SpoSPBC16C6.13c
IMP
CelWBGene00009542
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000003105
ISS
SpoSPBC16C6.13c
NAS
DmeFBgn0025724
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000003105
ISS
SpoSPBC16C6.13c
NAS
DmeFBgn0025724
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009542
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009542
GO:0010883 regulation of lipid storage P
IDA
DmeFBgn0025724
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000003105
IPI
SceS000003105
ISS
SpoSPBC16C6.13c
GO:0032940 secretion by cell P
IMP
CelWBGene00009542
GO:0048193 Golgi vesicle transport P
ISO
MmuMGI:1354962
GO:0048194 Golgi vesicle budding P
NAS
DmeFBgn0025724
GO:0048599 oocyte development P
IMP
CelWBGene00009542

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC16C6.13c
(O42937)		 YGL137W
(S000003105)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC16C6.13c
GO:0005829 cytosol C
IDA
SpoSPBC16C6.13c
GO:0030126 COPI vesicle coat C
IGI
SceS000003105
ISS
SceS000003105
SpoSPBC16C6.13c
GO:0003674 molecular_function F
ND
SceS000003105
SpoSPBC16C6.13c
GO:0006886 intracellular protein transport P
IC
SpoSPBC16C6.13c
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000003105
ISS
SpoSPBC16C6.13c
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000003105
ISS
SpoSPBC16C6.13c
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000003105
IPI
SceS000003105
ISS
SpoSPBC16C6.13c

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