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Search term: YGL171W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ROK1
SGD link S000003139
Alternative ID YGL171W
Description ATP-dependent RNA helicase of the DEAD box family; required for 18S rRNA synthesis
Synonyms YGL171W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0344 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g01440 GI:15226276
Arabidopsis thaliana (Ath) At3g02060 GI:6513947
Arabidopsis thaliana (Ath) At3g09720 GI:15232742
Caenorhabditis elegans (Cel) CE06239
(WBGene00011032)
GI:17508543 Q21736
Drosophila melanogaster (Dme) 7293941 GI:7293941 Q9VVK8
Homo sapiens (Hsa) Hs15316941 GI:15316941
Saccharomyces cerevisiae (Sce) YGL171w
(S000003139)
GI:6321267 P45818
Schizosaccharomyces pombe (Spo) SPAC22F3.08c GI:19113945 Q09775
Encephalitozoon cuniculi (Ecu) ECU07g1060 GI:19074529 Q8SRI9
Arabidopsis thaliana (Ath) At2g01440 GI:15226276
Arabidopsis thaliana (Ath) At3g02060 GI:6513947
Arabidopsis thaliana (Ath) At3g09720 GI:15232742
Caenorhabditis elegans (Cel) CE06239
(WBGene00011032)
GI:17508543 Q21736
Drosophila melanogaster (Dme) 7293941 GI:7293941 Q9VVK8
Homo sapiens (Hsa) Hs15316941 GI:15316941
Saccharomyces cerevisiae (Sce) YGL171w
(S000003139)
GI:6321267 P45818
Schizosaccharomyces pombe (Spo) SPAC22F3.08c GI:19113945 Q09775
Encephalitozoon cuniculi (Ecu) ECU07g1060 GI:19074529 Q8SRI9
Arabidopsis thaliana (Ath) At2g01440 GI:15226276
Arabidopsis thaliana (Ath) At3g02060 GI:6513947
Arabidopsis thaliana (Ath) At3g09720 GI:15232742
Caenorhabditis elegans (Cel) CE06239
(WBGene00011032)
GI:17508543 Q21736
Drosophila melanogaster (Dme) 7293941 GI:7293941 Q9VVK8
Homo sapiens (Hsa) Hs15316941 GI:15316941
Saccharomyces cerevisiae (Sce) YGL171w
(S000003139)
GI:6321267 P45818
Schizosaccharomyces pombe (Spo) SPAC22F3.08c GI:19113945 Q09775
Encephalitozoon cuniculi (Ecu) ECU07g1060 GI:19074529 Q8SRI9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g09720
GO:0005730 nucleolus C
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005829 cytosol C
IDA
SpoSPAC22F3.08c
GO:0030686 90S preribosome C
IDA
SceS000003139
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005524 ATP binding F
IC
SpoSPAC22F3.08c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g02060
At3g09720
At2g01440
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000003139
GO:0006364 rRNA processing P
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0048254 snoRNA localization P
IMP
SceS000003139

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5093

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX52 GI:38569505
Pan troglodytes (Ptr) DDX52 GI:114667862
Mus musculus (Mmu) Ddx52
(MGI:1925644)
GI:33859746 Q3TKX4
Rattus norvegicus (Rno) Ddx52
(RGD:621743)
GI:16758984
Gallus gallus (Gga) DDX52 GI:71897029
Drosophila melanogaster (Dme) CG5589
(FBgn0036754)
GI:24666101
Anopheles gambiae (Aga) AgaP_AGAP012358 GI:158300210
Caenorhabditis elegans (Cel) R05D11.4
(CE06239;
WBGene00011032)
GI:17508543 Q21736
Schizosaccharomyces pombe (Spo) rok1
(SPAC22F3.08c)
GI:19113945 Q09775
Saccharomyces cerevisiae (Sce) ROK1
(S000003139)
GI:6321267 P45818
Kluyveromyces lactis (Kla) KLLA0C17424g GI:50306033
Eremothecium gossypii (Ego) AGOS_ADL024C GI:45187850
Arabidopsis thaliana (Ath) AT3G09720 GI:22330935
Oryza sativa (Osa) Os07g0647900 GI:115473749
Plasmodium falciparum (Pfa) PF10_0209 GI:124802515


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g09720
MmuMGI:1925644
PfaPF10_0209
GO:0005730 nucleolus C
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005829 cytosol C
IDA
SpoSPAC22F3.08c
GO:0030686 90S preribosome C
IDA
SceS000003139
GO:0003674 molecular_function F
ND
MmuMGI:1925644
GO:0003724 RNA helicase activity F
ISS
PfaPF10_0209
GO:0003729 mRNA binding F
ISS
DmeFBgn0036754
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0036754
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005524 ATP binding F
IC
SpoSPAC22F3.08c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g09720
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000003139
GO:0006364 rRNA processing P
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0008150 biological_process P
ND
MmuMGI:1925644
PfaPF10_0209
GO:0048254 snoRNA localization P
IMP
SceS000003139

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2353

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9561 ENSANGP00000011621
Ashbya gossypii (Ago) ago1718 ADL024C
Arabidopsis thaliana (Ath) ath13051 At3g09720.1
Caenorhabditis elegans (Cel) cel13326 R05D11.4
(CE06239;
WBGene00011032)
Candida glabrata (Cgl) cgl3624 CAGL0K02387g
Cryptococcus neoformans (Cne) cne4452 177.m03205
Dictyostelium discoideum (Ddi) ddi3045 DDB0167865
Debaryomyces hansenii (Dha) dha4010 DEHA0E17369g
Drosophila melanogaster (Dme) dme10032 CG5589-PA
(FBgn0036754)
Danio rerio (Dre) dre30480 ENSDARP00000041372
Takifugu rubripes (Fru) fru2080 SINFRUP00000128018
Takifugu rubripes (Fru) fru2081 SINFRUP00000128019
Gallus gallus (Gga) gga9064 ENSGALP00000008800
Gallus gallus (Gga) gga9065 ENSGALP00000008801
(DDX52)
Homo sapiens (Hsa) hsa13528 ENSP00000268854
(DDX52)
Q9Y2R4
Kluyveromyces lactis (Kla) kla1977 KLLA0C17424g
Mus musculus (Mmu) mmu4445 ENSMUSP00000048802
(MGI:1925644)
Q3TKX4
Neurospora crassa (Ncr) ncr893 NCU00919.2
Oryza sativa (Osa) osa30323 4308.m00100
Oryza sativa (Osa) osa49948 5898.m00138
Plasmodium falciparum (Pfa) pfa427 PF10_0209
Rattus norvegicus (Rno) rno5763 ENSRNOP00000003600
(RGD:621743)
Q99PT0
Saccharomyces cerevisiae (Sce) sce2266 YGL171W
(S000003139)
Schizosaccharomyces pombe (Spo) spo3310 SPAC22F3.08c Q09775
Yarrowia lipolytica (Yli) yli1641 YALI0B21538g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g09720
MmuMGI:1925644
PfaPF10_0209
GO:0005730 nucleolus C
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005829 cytosol C
IDA
SpoSPAC22F3.08c
GO:0030686 90S preribosome C
IDA
SceS000003139
GO:0003674 molecular_function F
ND
MmuMGI:1925644
GO:0003724 RNA helicase activity F
ISS
PfaPF10_0209
GO:0003729 mRNA binding F
ISS
DmeFBgn0036754
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0036754
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005524 ATP binding F
IC
SpoSPAC22F3.08c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g09720
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000003139
GO:0006364 rRNA processing P
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0008150 biological_process P
ND
MmuMGI:1925644
PfaPF10_0209
GO:0048254 snoRNA localization P
IMP
SceS000003139

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC22F3.08c
(Q09775)
YGL171W
(S000003139)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005829 cytosol C
IDA
SpoSPAC22F3.08c
GO:0030686 90S preribosome C
IDA
SceS000003139
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0005524 ATP binding F
IC
SpoSPAC22F3.08c
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000003139
GO:0006364 rRNA processing P
ISS
SpoSPAC22F3.08c
TAS
SceS000003139
GO:0048254 snoRNA localization P
IMP
SceS000003139

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Search for gene by ID or name:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk