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Search term: YGL244W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RTF1
SGD link S000003213
Alternative ID YGL244W
Description Subunit of the RNA polymerase II-associated Paf1 complex; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in telomere maintenance
Synonyms YGL244W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2402 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g61040 GI:15219855
Caenorhabditis elegans (Cel) CE09619
(WBGene00009103)		 GI:17560116 P90845
Drosophila melanogaster (Dme) 7290368 GI:20128961
Drosophila melanogaster (Dme) 7291410
(Rtf1)		 GI:20130239 Q9W261
Homo sapiens (Hsa) Hs14749361 GI:14749361
Homo sapiens (Hsa) Hs22065291 GI:22065291
Saccharomyces cerevisiae (Sce) YGL244w
(S000003213)		 GI:6321193 P53064
Schizosaccharomyces pombe (Spo) SPBC651.09c GI:19112299 O94667
Encephalitozoon cuniculi (Ecu) ECU02g0360 GI:19073957 Q8SWF3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
DmeRtf1
SceS000003213
SpoSPBC651.09c
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000003213
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000003213
ISS
SpoSPBC651.09c
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000003213
GO:0042800 histone methyltransferase activity (H3-K4
specific)		 F
IMP
DmeRtf1
GO:0000003 reproduction P
IMP
CelWBGene00009103
GO:0002119 nematode larval development P
IMP
CelWBGene00009103
GO:0006366 transcription from RNA polymerase II
promoter		 P
IMP
SceS000003213
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000003213
ISS
SpoSPBC651.09c
GO:0006730 one-carbon metabolic process P
RCA
SceS000003213
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009103
GO:0007219 Notch signaling pathway P
IMP
DmeRtf1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009103
GO:0009910 negative regulation of flower development P
IMP
AthAt1g61040
GO:0010171 body morphogenesis P
IMP
CelWBGene00009103
GO:0010390 histone monoubiquitination P
IMP
SceS000003213
GO:0016571 histone methylation P
IMP
SceS000003213
ISS
SpoSPBC651.09c
GO:0016574 histone ubiquitination P
ISS
SpoSPBC651.09c
GO:0040007 growth P
IMP
CelWBGene00009103
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009103
GO:0040011 locomotion P
IMP
CelWBGene00009103
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00009103
GO:0045747 positive regulation of Notch signaling
pathway		 P
IGI
DmeRtf1
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IMP
AthAt1g61040
GO:0045941 positive regulation of transcription P
RCA
SceS000003213
GO:0051568 histone H3-K4 methylation P
IMP
DmeRtf1
GO:0051571 positive regulation of histone H3-K4
methylation		 P
IMP
DmeRtf1

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5871

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RTF1 GI:195976782
Pan troglodytes (Ptr) RTF1 GI:114656497
Canis familiaris (Cfa) RTF1 GI:73999803
Mus musculus (Mmu) Rtf1
(MGI:1309480)		 GI:149250063 O88381
Rattus norvegicus (Rno) Rtf1 GI:109468683
Gallus gallus (Gga) RTF1 GI:118091596
Drosophila melanogaster (Dme) Rtf1 GI:20130239 Q9W261
Anopheles gambiae (Aga) AgaP_AGAP012057 GI:158300586
Caenorhabditis elegans (Cel) F25B3.6
(CE09619;
WBGene00009103)		 GI:17560116 P90845
Schizosaccharomyces pombe (Spo) SPBC651.09c GI:19112299 O94667
Saccharomyces cerevisiae (Sce) RTF1
(S000003213)		 GI:6321193 P53064
Kluyveromyces lactis (Kla) KLLA0A00737g GI:50302195
Eremothecium gossypii (Ego) AGOS_AFR266W GI:45198784
Magnaporthe grisea (Mgr) MGG_00958 GI:145610699
Neurospora crassa (Ncr) NCU03956.1 GI:32405324
Arabidopsis thaliana (Ath) VIP5 GI:15219855
Oryza sativa (Osa) Os12g0535900 GI:115488898


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
DmeRtf1
SceS000003213
SpoSPBC651.09c
GO:0005730 nucleolus C
IDA
MmuMGI:1309480
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000003213
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000003213
ISS
SpoSPBC651.09c
GO:0003674 molecular_function F
ND
MmuMGI:1309480
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000003213
GO:0042800 histone methyltransferase activity (H3-K4
specific)		 F
IMP
DmeRtf1
GO:0000003 reproduction P
IMP
CelWBGene00009103
GO:0002119 nematode larval development P
IMP
CelWBGene00009103
GO:0006366 transcription from RNA polymerase II
promoter		 P
IMP
SceS000003213
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000003213
ISS
SpoSPBC651.09c
GO:0006730 one-carbon metabolic process P
RCA
SceS000003213
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009103
GO:0007219 Notch signaling pathway P
IMP
DmeRtf1
GO:0008150 biological_process P
ND
MmuMGI:1309480
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009103
GO:0009910 negative regulation of flower development P
IMP
AthVIP5
GO:0010171 body morphogenesis P
IMP
CelWBGene00009103
GO:0010390 histone monoubiquitination P
IMP
SceS000003213
GO:0016571 histone methylation P
IMP
SceS000003213
ISS
SpoSPBC651.09c
GO:0016574 histone ubiquitination P
ISS
SpoSPBC651.09c
GO:0040007 growth P
IMP
CelWBGene00009103
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009103
GO:0040011 locomotion P
IMP
CelWBGene00009103
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00009103
GO:0045747 positive regulation of Notch signaling
pathway		 P
IGI
DmeRtf1
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IMP
AthVIP5
GO:0045941 positive regulation of transcription P
RCA
SceS000003213
GO:0051568 histone H3-K4 methylation P
IMP
DmeRtf1
GO:0051571 positive regulation of histone H3-K4
methylation		 P
IMP
DmeRtf1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3218

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9243 ENSANGP00000016650
Ashbya gossypii (Ago) ago3458 AFR266W
Arabidopsis thaliana (Ath) ath5286 At1g61040.1
Caenorhabditis elegans (Cel) cel7177 F25B3.6
(CE09619;
WBGene00009103)
Candida glabrata (Cgl) cgl2400 CAGL0H07711g
Cryptococcus neoformans (Cne) cne1468 180.m00422
Dictyostelium discoideum (Ddi) ddi9322 DDB0218834
Debaryomyces hansenii (Dha) dha5463 DEHA0F24123g
Drosophila melanogaster (Dme) dme6526 CG10955-PA
(FBgn0034722)
Danio rerio (Dre) dre4453 ENSDARP00000006961 Q7SXG1
Encephalitozoon cuniculi (Ecu) ecu36 19073957
Takifugu rubripes (Fru) fru11922 SINFRUP00000137300
Gallus gallus (Gga) gga19214 ENSGALP00000013980
(RTF1)
Gallus gallus (Gga) gga19215 ENSGALP00000013981
(RTF1)		 Q5ZKE3
Homo sapiens (Hsa) hsa10476 ENSP00000260373
Kluyveromyces lactis (Kla) kla28 KLLA0A00737g
Mus musculus (Mmu) mmu15295 ENSMUSP00000028767
(MGI:1309480)		 A2AQ19
Neurospora crassa (Ncr) ncr3843 NCU03956.2
Oryza sativa (Osa) osa69623 6967.m00102
Oryza sativa (Osa) osa69644 6967.m00143
Oryza sativa (Osa) osa70182 7132.m00143
Rattus norvegicus (Rno) rno19490 ENSRNOP00000006996
(RGD:1310654)
Saccharomyces cerevisiae (Sce) sce2341 YGL244W
(S000003213)
Schizosaccharomyces pombe (Spo) spo4832 SPBC651.09c O94667
Yarrowia lipolytica (Yli) yli2784 YALI0D01892g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
DmeFBgn0034722
SceS000003213
SpoSPBC651.09c
GO:0005730 nucleolus C
IDA
MmuMGI:1309480
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000003213
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000003213
ISS
SpoSPBC651.09c
GO:0003674 molecular_function F
ND
MmuMGI:1309480
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000003213
GO:0042800 histone methyltransferase activity (H3-K4
specific)		 F
IMP
DmeFBgn0034722
GO:0000003 reproduction P
IMP
CelWBGene00009103
GO:0002119 nematode larval development P
IMP
CelWBGene00009103
GO:0006366 transcription from RNA polymerase II
promoter		 P
IMP
SceS000003213
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000003213
ISS
SpoSPBC651.09c
GO:0006730 one-carbon metabolic process P
RCA
SceS000003213
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009103
GO:0007219 Notch signaling pathway P
IMP
DmeFBgn0034722
GO:0008150 biological_process P
ND
MmuMGI:1309480
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009103
GO:0009910 negative regulation of flower development P
IMP
AthAt1g61040
GO:0010171 body morphogenesis P
IMP
CelWBGene00009103
GO:0010390 histone monoubiquitination P
IMP
SceS000003213
GO:0016571 histone methylation P
IMP
SceS000003213
ISS
SpoSPBC651.09c
GO:0016574 histone ubiquitination P
ISS
SpoSPBC651.09c
GO:0040007 growth P
IMP
CelWBGene00009103
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009103
GO:0040011 locomotion P
IMP
CelWBGene00009103
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00009103
GO:0045747 positive regulation of Notch signaling
pathway		 P
IGI
DmeFBgn0034722
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IMP
AthAt1g61040
GO:0045941 positive regulation of transcription P
RCA
SceS000003213
GO:0051568 histone H3-K4 methylation P
IMP
DmeFBgn0034722
GO:0051571 positive regulation of histone H3-K4
methylation		 P
IMP
DmeFBgn0034722

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC651.09c
(O94667)		 YGL244W
(S000003213)