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Search term: YGL246C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RAI1
SGD link S000003215
Alternative ID YGL246C
Description Nuclear protein that binds to and stabilizes the exoribonuclease Rat1p, required for pre-rRNA processing
Synonyms YGL246C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1982 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g17620_2 GI:15236594
Caenorhabditis elegans (Cel) CE11044
(WBGene00001050)		 GI:17506423 Q10660
Caenorhabditis elegans (Cel) CE14203 GI:17564734
Caenorhabditis elegans (Cel) CE28906
(WBGene00008561)		 GI:17532951 Q19174
Drosophila melanogaster (Dme) 7293288 GI:7293288
Drosophila melanogaster (Dme) 7303556 GI:7303556
Homo sapiens (Hsa) Hs14589874 GI:14589874
Homo sapiens (Hsa) Hs20631980 GI:20551109
Saccharomyces cerevisiae (Sce) YGL246c
(S000003215)		 GI:6321191 P53063
Schizosaccharomyces pombe (Spo) SPAC19D5.06c GI:19115816 O13836


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003215
SpoSPAC19D5.06c
IPI
SceS000003215
ISS
SpoSPAC19D5.06c
GO:0005829 cytosol C
IDA
SpoSPAC19D5.06c
GO:0003674 molecular_function F
ND
AthAt4g17620
SpoSPAC19D5.06c
GO:0030234 enzyme regulator activity F
IDA
SceS000003215
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0006364 rRNA processing P
ISS
SpoSPAC19D5.06c
GO:0008150 biological_process P
ND
AthAt4g17620
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IMP
SceS000003215
ISS
SpoSPAC19D5.06c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38061

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DOM3Z GI:20631980
Pan troglodytes (Ptr) DOM3Z GI:114606561
Canis familiaris (Cfa) DOM3Z GI:73972335
Mus musculus (Mmu) Dom3z
(MGI:1890444)		 GI:15809032 O70348
Rattus norvegicus (Rno) Dom3z
(RGD:1303267)		 GI:47059110
Drosophila melanogaster (Dme) CG9125
(FBgn0030793)		 GI:45555789
Anopheles gambiae (Aga) AgaP_AGAP007205 GI:158286076
Caenorhabditis elegans (Cel) dom-3
(CE11044;
WBGene00001050)		 GI:17506423 Q10660
Caenorhabditis elegans (Cel) math-43
(CE31828;
WBGene00022432)		 GI:32566586
Schizosaccharomyces pombe (Spo) din1
(SPAC19D5.06c)		 GI:19115816 O13836
Saccharomyces cerevisiae (Sce) RAI1
(S000003215)		 GI:6321191 P53063
Kluyveromyces lactis (Kla) KLLA0E12925g GI:50309051
Magnaporthe grisea (Mgr) MGG_12119 GI:145607089
Neurospora crassa (Ncr) NCU04191.1 GI:32405836


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1890444
GO:0005634 nucleus C
IDA
SceS000003215
SpoSPAC19D5.06c
IPI
SceS000003215
ISS
SpoSPAC19D5.06c
GO:0005829 cytosol C
IDA
SpoSPAC19D5.06c
GO:0003674 molecular_function F
ND
MmuMGI:1890444
SpoSPAC19D5.06c
GO:0005515 protein binding F
IPI
HsaDOM3Z
GO:0030234 enzyme regulator activity F
IDA
SceS000003215
GO:0042802 identical protein binding F
IPI
HsaDOM3Z
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0006364 rRNA processing P
ISS
SpoSPAC19D5.06c
GO:0008150 biological_process P
ND
MmuMGI:1890444
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IMP
SceS000003215
ISS
SpoSPAC19D5.06c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3797

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2649 ENSANGP00000025508
Ashbya gossypii (Ago) ago3454 AFR262C
Ashbya gossypii (Ago) ago3455 AFR263C
Arabidopsis thaliana (Ath) ath19625 At4g17620.1
Caenorhabditis elegans (Cel) cel10145 F54C1.2
(CE11044;
WBGene00001050)
Caenorhabditis elegans (Cel) cel17581 Y108F1.4
(CE31828;
WBGene00022432)
Candida glabrata (Cgl) cgl499 CAGL0C01925g
Cryptococcus neoformans (Cne) cne1370 180.m00318
Dictyostelium discoideum (Ddi) ddi691 DDB0190146
Debaryomyces hansenii (Dha) dha4897 DEHA0F11572g
Drosophila melanogaster (Dme) dme18261 CG9125-PA
(FBgn0030793)
Danio rerio (Dre) dre26416 ENSDARP00000012697
Takifugu rubripes (Fru) fru5130 SINFRUP00000134668
Takifugu rubripes (Fru) fru5129 SINFRUP00000171070
Homo sapiens (Hsa) hsa26870 ENSP00000337759
(DOM3Z)		 O77932
Kluyveromyces lactis (Kla) kla3530 KLLA0E12925g
Mus musculus (Mmu) mmu11505 ENSMUSP00000047018
(MGI:1890444)		 O70348
Neurospora crassa (Ncr) ncr4067 NCU04191.2
Oryza sativa (Osa) osa26088 3916.m00169
Oryza sativa (Osa) osa26114 3916.m00206
Oryza sativa (Osa) osa26756 3954.m00115
Rattus norvegicus (Rno) rno17462 ENSRNOP00000000483
(RGD:1303267)		 Q6MG77
Saccharomyces cerevisiae (Sce) sce2343 YGL246C
(S000003215)
Schizosaccharomyces pombe (Spo) spo2530 SPAC19D5.06c O13836
Yarrowia lipolytica (Yli) yli5035 YALI0E28490g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1890444
GO:0005634 nucleus C
IDA
SceS000003215
SpoSPAC19D5.06c
IPI
SceS000003215
ISS
SpoSPAC19D5.06c
GO:0005829 cytosol C
IDA
SpoSPAC19D5.06c
GO:0003674 molecular_function F
ND
AthAt4g17620
MmuMGI:1890444
SpoSPAC19D5.06c
GO:0030234 enzyme regulator activity F
IDA
SceS000003215
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0006364 rRNA processing P
ISS
SpoSPAC19D5.06c
GO:0008150 biological_process P
ND
AthAt4g17620
MmuMGI:1890444
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IMP
SceS000003215
ISS
SpoSPAC19D5.06c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC19D5.06c
(O13836)		 YGL246C
(S000003215)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003215
SpoSPAC19D5.06c
IPI
SceS000003215
ISS
SpoSPAC19D5.06c
GO:0005829 cytosol C
IDA
SpoSPAC19D5.06c
GO:0003674 molecular_function F
ND
SpoSPAC19D5.06c
GO:0030234 enzyme regulator activity F
IDA
SceS000003215
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003215
GO:0006364 rRNA processing P
ISS
SpoSPAC19D5.06c
GO:0030846 termination of RNA polymerase II transcription,
poly(A)-coupled		 P
IMP
SceS000003215
ISS
SpoSPAC19D5.06c

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GO info in one table:

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