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Search term: YGR005C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TFG2
SGD link S000003237
Alternative ID YGR005C
Description TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30
Synonyms YGR005C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2905 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor IIF, small subunit (RAP30)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g75510 GI:15222264
Arabidopsis thaliana (Ath) At3g52270 GI:15231173
Caenorhabditis elegans (Cel) CE28849 GI:17565528
Drosophila melanogaster (Dme) 7299356 GI:1729817
Homo sapiens (Hsa) Hs4758488
(GTF2F2)		 GI:4758488 P13984
Homo sapiens (Hsa) Hs18547639 GI:18547639
Saccharomyces cerevisiae (Sce) YGR005c
(S000003237)		 GI:6321442 P41896
Schizosaccharomyces pombe (Spo) SPBC1198.13c GI:19111874 O94424
Encephalitozoon cuniculi (Ecu) ECU02g0780 GI:19073998 Q8SSF8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
HsaGTF2F2
SpoSPBC1198.13c
GO:0005654 nucleoplasm C
EXP
HsaGTF2F2
GO:0005674 transcription factor TFIIF complex C
ISS
AthAt1g75510
SpoSPBC1198.13c
TAS
SceS000003237
GO:0005739 mitochondrion C
IDA
AthAt1g75510
GO:0005816 spindle pole body C
IDA
SpoSPBC1198.13c
GO:0015630 microtubule cytoskeleton C
IDA
HsaGTF2F2
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
AthAt1g75510
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPBC1198.13c
GO:0005515 protein binding F
IPI
HsaGTF2F2
GO:0005524 ATP binding F
ISS
SpoSPBC1198.13c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0006200 ATP catabolic process P
ISS
SpoSPBC1198.13c
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000003237
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaGTF2F2
ISS
AthAt1g75510
SpoSPBC1198.13c
TAS
SceS000003237
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaGTF2F2
GO:0008380 RNA splicing P
EXP
HsaGTF2F2
GO:0045449 regulation of transcription P
ISS
SpoSPBC1198.13c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117805

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) tfg2
(SPBC1198.13c)		 GI:19111874 O94424
Saccharomyces cerevisiae (Sce) TFG2
(S000003237)		 GI:6321442 P41896
Kluyveromyces lactis (Kla) KLLA0C18194g GI:50306097
Eremothecium gossypii (Ego) AGOS_AFR502C GI:45199020


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1198.13c
GO:0005674 transcription factor TFIIF complex C
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0005816 spindle pole body C
IDA
SpoSPBC1198.13c
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPBC1198.13c
GO:0005524 ATP binding F
ISS
SpoSPBC1198.13c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0006200 ATP catabolic process P
ISS
SpoSPBC1198.13c
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000003237
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0045449 regulation of transcription P
ISS
SpoSPBC1198.13c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2786

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2452 ENSANGP00000015059
Ashbya gossypii (Ago) ago3694 AFR502C
Arabidopsis thaliana (Ath) ath6869 At1g75510.1
Arabidopsis thaliana (Ath) ath16558 At3g52270.1
Caenorhabditis elegans (Cel) cel18517 Y39B6A.36
(CE29873;
WBGene00012694)
Candida glabrata (Cgl) cgl1604 CAGL0F08679g
Dictyostelium discoideum (Ddi) ddi12799 DDB0231010
Debaryomyces hansenii (Dha) dha319 DEHA0A07194g
Drosophila melanogaster (Dme) dme11932 CG6538-PA
(FBgn0010421)
Danio rerio (Dre) dre22759 ENSDARP00000029983
Danio rerio (Dre) dre22758 ENSDARP00000030170
Encephalitozoon cuniculi (Ecu) ecu77 19073998
Takifugu rubripes (Fru) fru1729 SINFRUP00000133169
Takifugu rubripes (Fru) fru15906 SINFRUP00000143180
Takifugu rubripes (Fru) fru1730 SINFRUP00000176808
Gallus gallus (Gga) gga2936 ENSGALP00000027374
(GTF2F2)
Gallus gallus (Gga) gga2937 ENSGALP00000027375
Homo sapiens (Hsa) hsa8748 ENSP00000340823
(GTF2F2)		 P13984
Homo sapiens (Hsa) hsa8747 ENSP00000351886
Kluyveromyces lactis (Kla) kla2009 KLLA0C18194g
Neurospora crassa (Ncr) ncr2952 NCU03047.2
Oryza sativa (Osa) osa23556 3732.m00154
Oryza sativa (Osa) osa32038 4398.m00113
Oryza sativa (Osa) osa48959 5830.m00172
Rattus norvegicus (Rno) rno11722 ENSRNOP00000044668
(RGD:620772)		 Q63489
Saccharomyces cerevisiae (Sce) sce2366 YGR005C
(S000003237)
Schizosaccharomyces pombe (Spo) spo2894 SPBC1198.13c O94424
Yarrowia lipolytica (Yli) yli6007 YALI0F15785g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1198.13c
NAS
DmeFBgn0010421
GO:0005674 transcription factor TFIIF complex C
ISS
AthAt1g75510
DmeFBgn0010421
SpoSPBC1198.13c
TAS
SceS000003237
GO:0005739 mitochondrion C
IDA
AthAt1g75510
GO:0005816 spindle pole body C
IDA
SpoSPBC1198.13c
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
AthAt1g75510
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPBC1198.13c
NAS
DmeFBgn0010421
GO:0005524 ATP binding F
ISS
SpoSPBC1198.13c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0010421
SpoSPBC1198.13c
TAS
SceS000003237
GO:0016986 transcription initiation factor
activity		 F
NAS
DmeFBgn0010421
GO:0000003 reproduction P
IMP
CelWBGene00012694
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00012694
GO:0006200 ATP catabolic process P
ISS
SpoSPBC1198.13c
GO:0006366 transcription from RNA polymerase II
promoter		 P
NAS
DmeFBgn0010421
RCA
SceS000003237
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
AthAt1g75510
DmeFBgn0010421
SpoSPBC1198.13c
TAS
SceS000003237
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00012694
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012694
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012694
GO:0045449 regulation of transcription P
ISS
SpoSPBC1198.13c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1198.13c
(O94424)		 YGR005C
(S000003237)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1198.13c
GO:0005674 transcription factor TFIIF complex C
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0005816 spindle pole body C
IDA
SpoSPBC1198.13c
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPBC1198.13c
GO:0005524 ATP binding F
ISS
SpoSPBC1198.13c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0006200 ATP catabolic process P
ISS
SpoSPBC1198.13c
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000003237
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPBC1198.13c
TAS
SceS000003237
GO:0045449 regulation of transcription P
ISS
SpoSPBC1198.13c

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