Search term: YGR013W

Gene summary:

KOG results:

KOG name	Phylogenetic pattern (and link to KOGs with this pattern)
KOG2253	ACDHYP-

KOGs classification	KOGs description
INFORMATION STORAGE AND PROCESSING	U1 snRNP complex, subunit SNU71 and related PWI-motif proteins

Species	KOG link	NCBI link	UniProt link
Arabidopsis thaliana (Ath)	At1g60200	GI:15219021
Caenorhabditis elegans (Cel)	CE21257	GI:17565044
Caenorhabditis elegans (Cel)	CE21258	GI:17565046
Drosophila melanogaster (Dme)	7290607 (FBgn0028474)	GI:18857955	Q9V3Y5
Homo sapiens (Hsa)	Hs17477175	GI:17477175
Saccharomyces cerevisiae (Sce)	YGR013w (S000003245)	GI:6321450	P53207
Schizosaccharomyces pombe (Spo)	SPBC839.10	GI:19112042	Q8WZK0

GO terms for KOG results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005634	nucleus	C	IC Dme FBgn0028474 IDA Spo SPBC839.10
GO:0005681	spliceosomal complex	C	NAS Spo SPBC839.10
GO:0005685	U1 snRNP	C	IDA Sce S000003245 Spo SPBC839.10
GO:0005829	cytosol	C	IDA Spo SPBC839.10
GO:0071004	U2-type prespliceosome	C	IDA Sce S000003245
GO:0071011	precatalytic spliceosome	C	IDA Dme FBgn0028474
GO:0003676	nucleic acid binding	F	ISS Ath At1g60200
GO:0003723	RNA binding	F	IDA Sce S000003245 ISS Spo SPBC839.10
GO:0003729	mRNA binding	F	ISS Dme FBgn0028474
GO:0000381	regulation of alternative nuclear mRNA splicing, via spliceosome	P	IMP Dme FBgn0028474
GO:0000395	nuclear mRNA 5'-splice site recognition	P	IC Spo SPBC839.10
GO:0000398	nuclear mRNA splicing, via spliceosome	P	IC Dme FBgn0028474 IPI Sce S000003245 ISS Spo SPBC839.10

HomoloGene results:

HomoloGene cluster	Phylogenetic pattern
39075

Species	Gene ID	NCBI link	UniProt link
Saccharomyces cerevisiae (Sce)	SNU71 (S000003245)	GI:6321450	P53207
Kluyveromyces lactis (Kla)	KLLA0C18007g	GI:50306083
Eremothecium gossypii (Ego)	AGOS_AGR020C	GI:45201115

GO terms for Homologene results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005685	U1 snRNP	C	IDA Sce S000003245
GO:0071004	U2-type prespliceosome	C	IDA Sce S000003245
GO:0003723	RNA binding	F	IDA Sce S000003245
GO:0000398	nuclear mRNA splicing, via spliceosome	P	IPI Sce S000003245

OrthoMCL results:

OrthoMCL cluster	Phylogenetic pattern
OG1_20680

Species	OrthoMCL sequence	Model organism protein page	UniProt link
Ashbya gossypii (Ago)	ago4330	AGR020C
Candida glabrata (Cgl)	cgl1610	CAGL0F08811g
Debaryomyces hansenii (Dha)	dha869	DEHA0B04158g
Kluyveromyces lactis (Kla)	kla2002	KLLA0C18007g
Saccharomyces cerevisiae (Sce)	sce2374	YGR013W (S000003245)
Yarrowia lipolytica (Yli)	yli2727	YALI0D00539g

GO terms for OrthoMCL results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005685	U1 snRNP	C	IDA Sce S000003245
GO:0071004	U2-type prespliceosome	C	IDA Sce S000003245
GO:0003723	RNA binding	F	IDA Sce S000003245
GO:0000398	nuclear mRNA splicing, via spliceosome	P	IPI Sce S000003245

Curated yeast ortholog results:

S. pombe systematic ID	S. cerevisiae systematic ID
SPBC839.10 (Q8WZK0)	YGR013W (S000003245)

GO terms for curated homolog results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005634	nucleus	C	IDA Spo SPBC839.10
GO:0005681	spliceosomal complex	C	NAS Spo SPBC839.10
GO:0005685	U1 snRNP	C	IDA Sce S000003245 Spo SPBC839.10
GO:0005829	cytosol	C	IDA Spo SPBC839.10
GO:0071004	U2-type prespliceosome	C	IDA Sce S000003245
GO:0003723	RNA binding	F	IDA Sce S000003245 ISS Spo SPBC839.10
GO:0000395	nuclear mRNA 5'-splice site recognition	P	IC Spo SPBC839.10
GO:0000398	nuclear mRNA splicing, via spliceosome	P	IPI Sce S000003245 ISS Spo SPBC839.10