YOGY Home YOGY Help

Search term: YGR047C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TFC4
SGD link S000003279
Alternative ID YGR047C
Description One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA domain of TFIIIC that binds BoxA DNA promoter sites of tRNA and similar genes; has TPR motifs; human homolog is TFIIIC-102
Synonyms YGR047C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2076 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase III transcription factor TFIIIC

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g17680 GI:15220812
Caenorhabditis elegans (Cel) CE29016
(WBGene00014114)		 GI:17566944 Q95PV7
Drosophila melanogaster (Dme) 7302835 GI:7302835
Homo sapiens (Hsa) Hs6912398
(GTF3C3)		 GI:6912398 Q9Y5Q9
Saccharomyces cerevisiae (Sce) YGR047c
(S000003279)		 GI:6321484 P33339
Schizosaccharomyces pombe (Spo) SPCC16C4.14c GI:19075424 O74458
Encephalitozoon cuniculi (Ecu) ECU08g0840 GI:19173411 Q8SRC1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000127 transcription factor TFIIIC complex C
IDA
HsaGTF3C3
SceS000003279
SpoSPCC16C4.14c
GO:0005575 cellular_component C
ND
AthAt1g17680
GO:0005634 nucleus C
IDA
SpoSPCC16C4.14c
GO:0005829 cytosol C
IDA
SpoSPCC16C4.14c
GO:0003677 DNA binding F
IC
HsaGTF3C3
GO:0003709 RNA polymerase III transcription factor
activity		 F
IC
HsaGTF3C3
IDA
SpoSPCC16C4.14c
TAS
SceS000003279
GO:0005515 protein binding F
IPI
HsaGTF3C3
GO:0043035 chromatin insulator sequence binding F
IDA
SpoSPCC16C4.14c
GO:0006351 transcription, DNA-dependent P
IC
HsaGTF3C3
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
IDA
SpoSPCC16C4.14c
TAS
SceS000003279
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014114
GO:0008150 biological_process P
ND
AthAt1g17680
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014114
GO:0042791 5S class rRNA transcription P
IC
HsaGTF3C3
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IC
HsaGTF3C3

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39089

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) sfc4
(SPCC16C4.14c)		 GI:19075424 O74458
Saccharomyces cerevisiae (Sce) TFC4
(S000003279)		 GI:6321484 P33339
Kluyveromyces lactis (Kla) KLLA0C02453g GI:50304701
Eremothecium gossypii (Ego) AGOS_AFR663W GI:45199182
Magnaporthe grisea (Mgr) MGG_06314 GI:39976823
Neurospora crassa (Ncr) NCU00310.1 GI:32403566


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000127 transcription factor TFIIIC complex C
IDA
SceS000003279
SpoSPCC16C4.14c
GO:0005634 nucleus C
IDA
SpoSPCC16C4.14c
GO:0005829 cytosol C
IDA
SpoSPCC16C4.14c
GO:0003709 RNA polymerase III transcription factor
activity		 F
IDA
SpoSPCC16C4.14c
TAS
SceS000003279
GO:0043035 chromatin insulator sequence binding F
IDA
SpoSPCC16C4.14c
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
IDA
SpoSPCC16C4.14c
TAS
SceS000003279

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2243

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7330 ENSANGP00000010236
Ashbya gossypii (Ago) ago3856 AFR663W
Arabidopsis thaliana (Ath) ath1892 At1g17680.1
Arabidopsis thaliana (Ath) ath1893 At1g17680.2
Caenorhabditis elegans (Cel) cel22285 ZK856.13
(CE29016;
WBGene00014114)
Candida glabrata (Cgl) cgl152 CAGL0A03630g
Cryptococcus neoformans (Cne) cne3843 185.m02427
Dictyostelium discoideum (Ddi) ddi12522 DDB0231090
Debaryomyces hansenii (Dha) dha5765 DEHA0G01507g
Drosophila melanogaster (Dme) dme5584 CG8950-PA
(FBgn0034186)
Escherichia coli (Eco) eco3409 49176366
Encephalitozoon cuniculi (Ecu) ecu242 19173411
Takifugu rubripes (Fru) fru4418 SINFRUP00000130914
Gallus gallus (Gga) gga21287 ENSGALP00000012911
(GTF3C3)
Homo sapiens (Hsa) hsa19039 ENSP00000263956
(GTF3C3)		 Q9Y5Q9-1
Kluyveromyces lactis (Kla) kla1305 KLLA0C02453g
Mus musculus (Mmu) mmu343 ENSMUSP00000039420
(MGI:2138383)		 Q3TMP1
Neurospora crassa (Ncr) ncr296 NCU00310.2
Oryza sativa (Osa) osa65298 6755.m00122
Rattus norvegicus (Rno) rno30037 ENSRNOP00000002864
(RGD:1309185)
Saccharomyces cerevisiae (Sce) sce2414 YGR047C
(S000003279)
Schizosaccharomyces pombe (Spo) spo1130 SPCC16C4.14c O74458
Yarrowia lipolytica (Yli) yli763 YALI0B00528g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000127 transcription factor TFIIIC complex C
IDA
SceS000003279
SpoSPCC16C4.14c
GO:0005575 cellular_component C
ND
AthAt1g17680
MmuMGI:2138383
GO:0005634 nucleus C
IDA
SpoSPCC16C4.14c
GO:0005829 cytosol C
IDA
SpoSPCC16C4.14c
GO:0003674 molecular_function F
ND
MmuMGI:2138383
GO:0003709 RNA polymerase III transcription factor
activity		 F
IDA
SpoSPCC16C4.14c
TAS
SceS000003279
GO:0043035 chromatin insulator sequence binding F
IDA
SpoSPCC16C4.14c
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
IDA
SpoSPCC16C4.14c
TAS
SceS000003279
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014114
GO:0008150 biological_process P
ND
AthAt1g17680
MmuMGI:2138383
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014114

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC16C4.14c
(O74458)		 YGR047C
(S000003279)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000127 transcription factor TFIIIC complex C
IDA
SceS000003279
SpoSPCC16C4.14c
GO:0005634 nucleus C
IDA
SpoSPCC16C4.14c
GO:0005829 cytosol C
IDA
SpoSPCC16C4.14c
GO:0003709 RNA polymerase III transcription factor
activity		 F
IDA
SpoSPCC16C4.14c
TAS
SceS000003279
GO:0043035 chromatin insulator sequence binding F
IDA
SpoSPCC16C4.14c
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
IDA
SpoSPCC16C4.14c
TAS
SceS000003279

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk