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Search term: YGR056W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RSC1
SGD link S000003288
Alternative ID YGR056W
Description Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-specific genes; contains two essential bromodomains, a bromo-adjacent homology (BAH) domain, and an AT hook
Synonyms YGR056W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1827 -CDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE05310 GI:17505721
Drosophila melanogaster (Dme) 7301208 GI:7301208 Q9VC36
Homo sapiens (Hsa) Hs8922565 GI:8922565
Homo sapiens (Hsa) Hs8922848 GI:8922848
Saccharomyces cerevisiae (Sce) YGR056w
(S000003288)		 GI:6321493 P53236
Saccharomyces cerevisiae (Sce) YKR008w
(S000001716)		 GI:6322860 Q02206
Saccharomyces cerevisiae (Sce) YLR357w
(S000004349)		 GI:6323389 Q06488
Schizosaccharomyces pombe (Spo) SPBC1734.15 GI:19112224 Q09948
Schizosaccharomyces pombe (Spo) SPBC4B4.03 GI:19113212 O74964


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC1734.15
ISS
SpoSPBC4B4.03
GO:0005634 nucleus C
IDA
SpoSPBC4B4.03
SPBC1734.15
GO:0005829 cytosol C
IDA
SpoSPBC1734.15
GO:0016586 RSC complex C
IDA
SceS000003288
S000004349
S000001716
SpoSPBC4B4.03
SPBC1734.15
GO:0003674 molecular_function F
ND
SpoSPBC1734.15
GO:0008094 DNA-dependent ATPase activity F
IC
SceS000003288
IDA
SceS000004349
S000001716
ISS
SceS000003288
GO:0070577 histone acetyl-lysine binding F
IDA
SceS000001716
GO:0000086 G2/M transition of mitotic cell
cycle		 P
IMP
SceS000001716
RCA
SceS000003288
GO:0006276 plasmid maintenance P
IMP
SceS000004349
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IPI
SceS000003288
S000004349
GO:0006337 nucleosome disassembly P
IDA
SceS000003288
S000001716
S000004349
GO:0006338 chromatin remodeling P
IC
SpoSPBC1734.15
ISS
SpoSPBC4B4.03
GO:0006354 RNA elongation P
RCA
SceS000003288
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000004349
S000001716
S000003288
GO:0007062 sister chromatid cohesion P
IMP
SceS000004349
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPBC1734.15
SPBC4B4.03
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPBC4B4.03
SPBC1734.15
GO:0042173 regulation of sporulation resulting in formation
of a cellular spore		 P
IMP
SceS000003288
GO:0043044 ATP-dependent chromatin remodeling P
IC
SceS000003288
IDA
SceS000001716
S000004349
ISS
SceS000003288

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_947

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3171 ENSANGP00000004174
Ashbya gossypii (Ago) ago587 ABL005C
Caenorhabditis elegans (Cel) cel2744 C26C6.1
Candida glabrata (Cgl) cgl328 CAGL0B02816g
Candida glabrata (Cgl) cgl3711 CAGL0K04389g
Cryptococcus neoformans (Cne) cne1652 164.m02093
Cryptococcus neoformans (Cne) cne2356 181.m08390
Debaryomyces hansenii (Dha) dha1500 DEHA0C01529g
Drosophila melanogaster (Dme) dme14289 CG11375-PA
(FBgn0039227)
Danio rerio (Dre) dre1003 ENSDARP00000039035
Danio rerio (Dre) dre20808 ENSDARP00000040460
Danio rerio (Dre) dre1007 ENSDARP00000040756
Danio rerio (Dre) dre20811 ENSDARP00000041953
Danio rerio (Dre) dre20809 ENSDARP00000043462
Danio rerio (Dre) dre1005 ENSDARP00000043656
Danio rerio (Dre) dre20810 ENSDARP00000044945
Danio rerio (Dre) dre1008 ENSDARP00000045970
Danio rerio (Dre) dre1006 ENSDARP00000047316
Danio rerio (Dre) dre20806 ENSDARP00000048834
Danio rerio (Dre) dre1004 ENSDARP00000050366
Danio rerio (Dre) dre20807 ENSDARP00000050376
Takifugu rubripes (Fru) fru1440 SINFRUP00000136812
Takifugu rubripes (Fru) fru1442 SINFRUP00000136813
Takifugu rubripes (Fru) fru888 SINFRUP00000149264
Takifugu rubripes (Fru) fru887 SINFRUP00000149265
Takifugu rubripes (Fru) fru892 SINFRUP00000149266
Takifugu rubripes (Fru) fru1444 SINFRUP00000167621
Takifugu rubripes (Fru) fru890 SINFRUP00000168177
Takifugu rubripes (Fru) fru891 SINFRUP00000170523
Takifugu rubripes (Fru) fru1445 SINFRUP00000171307
Takifugu rubripes (Fru) fru889 SINFRUP00000172873
Takifugu rubripes (Fru) fru1443 SINFRUP00000173116
Takifugu rubripes (Fru) fru1441 SINFRUP00000176819
Gallus gallus (Gga) gga4929 ENSGALP00000002412
(PBRM1)		 Q90941
Homo sapiens (Hsa) hsa22624 ENSP00000296302
(PBRM1)		 Q86U86-1
Homo sapiens (Hsa) hsa22621 ENSP00000296303
(PBRM1)		 Q86U86-4
Homo sapiens (Hsa) hsa22622 ENSP00000338302
(PBRM1)		 Q86U86-5
Homo sapiens (Hsa) hsa22620 ENSP00000349213
(PBRM1)		 Q86U86-3
Homo sapiens (Hsa) hsa22623 ENSP00000355246
Kluyveromyces lactis (Kla) kla1118 KLLA0B13211g
Mus musculus (Mmu) mmu7861 ENSMUSP00000061312
(MGI:1923998)
Neurospora crassa (Ncr) ncr2287 NCU02354.2
Rattus norvegicus (Rno) rno11999 ENSRNOP00000016581
(RGD:1565549)
Saccharomyces cerevisiae (Sce) sce2423 YGR056W
(S000003288)
Saccharomyces cerevisiae (Sce) sce4472 YLR357W
(S000004349)
Schizosaccharomyces pombe (Spo) spo3560 SPBC1734.15 Q09948
Schizosaccharomyces pombe (Spo) spo3984 SPBC4B4.03 O74964
Yarrowia lipolytica (Yli) yli3572 YALI0D20702g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000776 kinetochore C
IDA
MmuMGI:1923998
GO:0000790 nuclear chromatin C
IC
SpoSPBC1734.15
ISS
SpoSPBC4B4.03
GO:0005634 nucleus C
IC
MmuMGI:1923998
IDA
SpoSPBC4B4.03
SPBC1734.15
GO:0005829 cytosol C
IDA
SpoSPBC1734.15
GO:0016586 RSC complex C
IDA
SceS000003288
S000004349
SpoSPBC4B4.03
SPBC1734.15
GO:0003674 molecular_function F
ND
SpoSPBC1734.15
GO:0003682 chromatin binding F
IDA
MmuMGI:1923998
GO:0005515 protein binding F
IPI
MmuMGI:1923998
GO:0008094 DNA-dependent ATPase activity F
IC
SceS000003288
IDA
SceS000004349
ISS
SceS000003288
GO:0000086 G2/M transition of mitotic cell
cycle		 P
RCA
SceS000003288
GO:0001890 placenta development P
IMP
MmuMGI:1923998
GO:0006276 plasmid maintenance P
IMP
SceS000004349
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IPI
SceS000003288
S000004349
GO:0006337 nucleosome disassembly P
IDA
SceS000003288
S000004349
GO:0006338 chromatin remodeling P
IC
SpoSPBC1734.15
ISS
SpoSPBC4B4.03
GO:0006354 RNA elongation P
RCA
SceS000003288
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000004349
S000003288
GO:0007062 sister chromatid cohesion P
IMP
SceS000004349
GO:0007305 vitelline membrane formation in chorion-containing
eggshell		 P
IMP
DmeFBgn0039227
GO:0007306 eggshell chorion assembly P
IMP
DmeFBgn0039227
GO:0007507 heart development P
IMP
MmuMGI:1923998
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPBC1734.15
SPBC4B4.03
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPBC4B4.03
SPBC1734.15
GO:0042173 regulation of sporulation resulting in formation
of a cellular spore		 P
IMP
SceS000003288
GO:0043044 ATP-dependent chromatin remodeling P
IC
SceS000003288
IDA
SceS000004349
ISS
SceS000003288

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC4B4.03
(O74964)		 YGR056W
(S000003288)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
ISS
SpoSPBC4B4.03
GO:0005634 nucleus C
IDA
SpoSPBC4B4.03
GO:0016586 RSC complex C
IDA
SceS000003288
SpoSPBC4B4.03
GO:0008094 DNA-dependent ATPase activity F
IC
SceS000003288
ISS
SceS000003288
GO:0000086 G2/M transition of mitotic cell
cycle		 P
RCA
SceS000003288
GO:0006303 double-strand break repair via nonhomologous end
joining		 P
IPI
SceS000003288
GO:0006337 nucleosome disassembly P
IDA
SceS000003288
GO:0006338 chromatin remodeling P
ISS
SpoSPBC4B4.03
GO:0006354 RNA elongation P
RCA
SceS000003288
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000003288
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPBC4B4.03
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPBC4B4.03
GO:0042173 regulation of sporulation resulting in formation
of a cellular spore		 P
IMP
SceS000003288
GO:0043044 ATP-dependent chromatin remodeling P
IC
SceS000003288
ISS
SceS000003288

Back to the top
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GO info in one table:

s.khadayate@ucl.ac.uk