YOGY Home | YOGY Help |
|
KOG name | Phylogenetic pattern (and link to KOGs with this pattern) |
KOG3490 | ACDHYPE![]() |
KOGs classification | KOGs description |
INFORMATION STORAGE AND PROCESSING | Transcription elongation factor SPT4 |
GO ID | GO term | GO aspect | Evidence codes and associations | ||||||||||||
GO:0000776 | kinetochore | C |
| ||||||||||||
GO:0000784 | nuclear chromosome, telomeric region | C |
| ||||||||||||
GO:0000790 | nuclear chromatin | C |
| ||||||||||||
GO:0005634 | nucleus | C |
| ||||||||||||
GO:0005654 | nucleoplasm | C |
| ||||||||||||
GO:0005829 | cytosol | C |
| ||||||||||||
GO:0008023 | transcription elongation factor complex | C |
| ||||||||||||
GO:0032044 | DSIF complex | C |
| ||||||||||||
GO:0033553 | rDNA heterochromatin | C |
| ||||||||||||
GO:0003700 | transcription factor activity | F |
| ||||||||||||
GO:0003701 | RNA polymerase I transcription factor activity | F |
| ||||||||||||
GO:0005515 | protein binding | F |
| ||||||||||||
GO:0008148 | negative transcription elongation factor activity | F |
| ||||||||||||
GO:0008159 | positive transcription elongation factor activity | F |
| ||||||||||||
GO:0008270 | zinc ion binding | F |
| ||||||||||||
GO:0016944 | RNA polymerase II transcription elongation factor activity | F |
| ||||||||||||
GO:0046982 | protein heterodimerization activity | F |
| ||||||||||||
GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | P |
| ||||||||||||
GO:0006283 | transcription-coupled nucleotide-excision repair | P |
| ||||||||||||
GO:0006325 | chromatin organization | P |
| ||||||||||||
GO:0006338 | chromatin remodeling | P |
| ||||||||||||
GO:0006342 | chromatin silencing | P |
| ||||||||||||
GO:0006355 | regulation of transcription, DNA-dependent | P |
| ||||||||||||
GO:0006356 | regulation of transcription from RNA polymerase I promoter | P |
| ||||||||||||
GO:0006357 | regulation of transcription from RNA polymerase II promoter | P |
| ||||||||||||
GO:0006368 | RNA elongation from RNA polymerase II promoter | P |
| ||||||||||||
GO:0006397 | mRNA processing | P |
| ||||||||||||
GO:0007059 | chromosome segregation | P |
| ||||||||||||
GO:0008340 | determination of adult lifespan | P |
| ||||||||||||
GO:0034244 | negative regulation of RNA elongation from RNA polymerase II promoter | P |
| ||||||||||||
GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | P |
|
HomoloGene cluster | Phylogenetic pattern |
39095 | ![]() |
Species | Gene ID | NCBI link | UniProt link |
Saccharomyces cerevisiae (Sce) | SPT4 (S000003295) | GI:6321501 | P32914 |
Kluyveromyces lactis (Kla) | SPT4_KLULA | GI:50303877 | |
Eremothecium gossypii (Ego) | AGOS_AFR576C | GI:45199094 |
GO ID | GO term | GO aspect | Evidence codes and associations | ||||||||
GO:0000776 | kinetochore | C |
| ||||||||
GO:0000784 | nuclear chromosome, telomeric region | C |
| ||||||||
GO:0005634 | nucleus | C |
| ||||||||
GO:0008023 | transcription elongation factor complex | C |
| ||||||||
GO:0032044 | DSIF complex | C |
| ||||||||
GO:0033553 | rDNA heterochromatin | C |
| ||||||||
GO:0003701 | RNA polymerase I transcription factor activity | F |
| ||||||||
GO:0016944 | RNA polymerase II transcription elongation factor activity | F |
| ||||||||
GO:0006283 | transcription-coupled nucleotide-excision repair | P |
| ||||||||
GO:0006325 | chromatin organization | P |
| ||||||||
GO:0006342 | chromatin silencing | P |
| ||||||||
GO:0006355 | regulation of transcription, DNA-dependent | P |
| ||||||||
GO:0006356 | regulation of transcription from RNA polymerase I promoter | P |
| ||||||||
GO:0006368 | RNA elongation from RNA polymerase II promoter | P |
| ||||||||
GO:0007059 | chromosome segregation | P |
|
OrthoMCL cluster | Phylogenetic pattern |
OG1_2500 | ![]() |
GO ID | GO term | GO aspect | Evidence codes and associations | ||||||||||||
GO:0000776 | kinetochore | C |
| ||||||||||||
GO:0000784 | nuclear chromosome, telomeric region | C |
| ||||||||||||
GO:0000790 | nuclear chromatin | C |
| ||||||||||||
GO:0005634 | nucleus | C |
| ||||||||||||
GO:0005829 | cytosol | C |
| ||||||||||||
GO:0008023 | transcription elongation factor complex | C |
| ||||||||||||
GO:0032044 | DSIF complex | C |
| ||||||||||||
GO:0033553 | rDNA heterochromatin | C |
| ||||||||||||
GO:0003682 | chromatin binding | F |
| ||||||||||||
GO:0003700 | transcription factor activity | F |
| ||||||||||||
GO:0003701 | RNA polymerase I transcription factor activity | F |
| ||||||||||||
GO:0005515 | protein binding | F |
| ||||||||||||
GO:0008270 | zinc ion binding | F |
| ||||||||||||
GO:0016944 | RNA polymerase II transcription elongation factor activity | F |
| ||||||||||||
GO:0006283 | transcription-coupled nucleotide-excision repair | P |
| ||||||||||||
GO:0006325 | chromatin organization | P |
| ||||||||||||
GO:0006338 | chromatin remodeling | P |
| ||||||||||||
GO:0006342 | chromatin silencing | P |
| ||||||||||||
GO:0006355 | regulation of transcription, DNA-dependent | P |
| ||||||||||||
GO:0006356 | regulation of transcription from RNA polymerase I promoter | P |
| ||||||||||||
GO:0006368 | RNA elongation from RNA polymerase II promoter | P |
| ||||||||||||
GO:0006397 | mRNA processing | P |
| ||||||||||||
GO:0007059 | chromosome segregation | P |
| ||||||||||||
GO:0008340 | determination of adult lifespan | P |
| ||||||||||||
GO:0016582 | non-covalent chromatin modification | P |
| ||||||||||||
GO:0034244 | negative regulation of RNA elongation from RNA polymerase II promoter | P |
|
Curated yeast ortholog results:
S. pombe systematic ID | S. cerevisiae systematic ID |
SPBC21C3.16c (Q9P7K8) | YGR063C (S000003295) |