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Search term: YGR074W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SMD1
SGD link S000003306
Alternative ID YGR074W
Description Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D1
Synonyms YGR074W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3428 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein SMD1 and related snRNPs

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g07590 GI:15231485
Arabidopsis thaliana (Ath) At4g02840 GI:15235510
Caenorhabditis elegans (Cel) CE02065
(WBGene00004916)		 GI:17536583 Q10013
Drosophila melanogaster (Dme) 7294552
(FBgn0016940)		 GI:17864386
Homo sapiens (Hsa) Hs14249632
(LSM10)		 GI:14249632 Q969L4
Homo sapiens (Hsa) Hs18579285_1 GI:18579285
Homo sapiens (Hsa) Hs5902102
(SNRPD1)		 GI:5902102 Q7Z5A3
Saccharomyces cerevisiae (Sce) YGR074w
(S000003306)		 GI:6321510 Q02260
Schizosaccharomyces pombe (Spo) SPAC27D7.07c GI:19115525 O42661
Encephalitozoon cuniculi (Ecu) ECU01g0545 GI:19075064


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0005634 nucleus C
IDA
SpoSPAC27D7.07c
ISS
AthAt4g02840
At3g07590
GO:0005654 nucleoplasm C
EXP
HsaSNRPD1
GO:0005682 U5 snRNP C
IDA
SceS000003306
GO:0005683 U7 snRNP C
IDA
HsaLSM10
GO:0005685 U1 snRNP C
IDA
SceS000003306
SpoSPAC27D7.07c
GO:0005730 nucleolus C
IDA
AthAt4g02840
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g02840
At3g07590
GO:0005829 cytosol C
EXP
HsaSNRPD1
IDA
SpoSPAC27D7.07c
GO:0005886 plasma membrane C
IDA
AthAt4g02840
At3g07590
GO:0015030 Cajal body C
IDA
HsaLSM10
GO:0016020 membrane C
IDA
AthAt4g02840
GO:0030532 small nuclear ribonucleoprotein
complex		 C
TAS
HsaSNRPD1
GO:0043186 P granule C
IDA
CelWBGene00004916
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0071004 U2-type prespliceosome C
IDA
SceS000003306
GO:0003674 molecular_function F
ND
AthAt4g02840
At3g07590
GO:0003723 RNA binding F
TAS
HsaSNRPD1
GO:0003729 mRNA binding F
IPI
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0005515 protein binding F
IPI
HsaLSM10
SNRPD1
GO:0071208 histone pre-mRNA DCP binding F
ISS
HsaLSM10
GO:0000003 reproduction P
IMP
CelWBGene00004916
GO:0000084 S phase of mitotic cell cycle P
IMP
HsaLSM10
GO:0000245 spliceosome assembly P
TAS
HsaSNRPD1
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPD1
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC27D7.07c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003306
IPI
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0002119 nematode larval development P
IMP
CelWBGene00004916
GO:0008380 RNA splicing P
EXP
HsaSNRPD1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004916
GO:0016071 mRNA metabolic process P
RCA
SceS000003306
GO:0040007 growth P
IMP
CelWBGene00004916
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004916

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39099

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SMD1
(S000003306)		 GI:6321510 Q02260
Kluyveromyces lactis (Kla) KLLA0D03773g GI:50306519
Eremothecium gossypii (Ego) AGOS_AER205W GI:45190808


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000003306
GO:0005682 U5 snRNP C
IDA
SceS000003306
GO:0005685 U1 snRNP C
IDA
SceS000003306
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000003306
GO:0071004 U2-type prespliceosome C
IDA
SceS000003306
GO:0003729 mRNA binding F
IPI
SceS000003306
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003306
IPI
SceS000003306
GO:0016071 mRNA metabolic process P
RCA
SceS000003306

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2149

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2677 ENSANGP00000009562
Ashbya gossypii (Ago) ago2707 AER205W
Arabidopsis thaliana (Ath) ath12854 At3g07590.1
Arabidopsis thaliana (Ath) ath18174 At4g02840.1
Caenorhabditis elegans (Cel) cel16622 T28D9.10
(CE02065;
WBGene00004916)
Candida glabrata (Cgl) cgl2870 CAGL0I08041g
Candida glabrata (Cgl) cgl3575 CAGL0K01287g
Cryptococcus neoformans (Cne) cne4589 186.m03429
Dictyostelium discoideum (Ddi) ddi6325 DDB0204374
Debaryomyces hansenii (Dha) dha643 DEHA0A14366g
Drosophila melanogaster (Dme) dme9268 CG10753-PA
(FBgn0016940)
Danio rerio (Dre) dre20369 ENSDARP00000027770
Encephalitozoon cuniculi (Ecu) ecu1701 19075064
Takifugu rubripes (Fru) fru30795 SINFRUP00000163293
Gallus gallus (Gga) gga10098 ENSGALP00000019299
(SNRPD1)
Homo sapiens (Hsa) hsa14791 ENSP00000300413
(SNRPD1)		 P62314
Kluyveromyces lactis (Kla) kla2232 KLLA0D03773g
Mus musculus (Mmu) mmu12312 ENSMUSP00000002551
(MGI:98344)		 P62315
Neurospora crassa (Ncr) ncr491 NCU00505.2
Oryza sativa (Osa) osa50598 5856.m00049
Oryza sativa (Osa) osa85566 8333.m00134
Plasmodium falciparum (Pfa) pfa717 PF11_0266
Rattus norvegicus (Rno) rno13769 ENSRNOP00000018646
(RGD:1306345)		 B2RZB7
Saccharomyces cerevisiae (Sce) sce2442 YGR074W
(S000003306)
Schizosaccharomyces pombe (Spo) spo257 SPAC27D7.07c O42661
Yarrowia lipolytica (Yli) yli172 YALI0A04961g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0005634 nucleus C
IDA
MmuMGI:98344
SpoSPAC27D7.07c
ISS
AthAt4g02840
At3g07590
GO:0005682 U5 snRNP C
IDA
SceS000003306
GO:0005685 U1 snRNP C
IDA
SceS000003306
SpoSPAC27D7.07c
GO:0005730 nucleolus C
IDA
AthAt4g02840
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g02840
At3g07590
GO:0005737 cytoplasm C
IDA
MmuMGI:98344
GO:0005829 cytosol C
IDA
SpoSPAC27D7.07c
GO:0005886 plasma membrane C
IDA
AthAt4g02840
At3g07590
GO:0016020 membrane C
IDA
AthAt4g02840
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
PfaPF11_0266
GO:0043186 P granule C
IDA
CelWBGene00004916
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0071004 U2-type prespliceosome C
IDA
SceS000003306
GO:0003674 molecular_function F
ND
AthAt4g02840
At3g07590
GO:0003729 mRNA binding F
IPI
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0000003 reproduction P
IMP
CelWBGene00004916
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC27D7.07c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003306
IPI
SceS000003306
ISS
SpoSPAC27D7.07c
GO:0002119 nematode larval development P
IMP
CelWBGene00004916
GO:0008380 RNA splicing P
ISS
PfaPF11_0266
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004916
GO:0016071 mRNA metabolic process P
RCA
SceS000003306
GO:0040007 growth P
IMP
CelWBGene00004916
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004916

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC27D7.07c
(O42661)		 YGR074W
(S000003306)