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Search term: YGR090W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name UTP22
SGD link S000003322
Alternative ID YGR090W
Description Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data
Synonyms YGR090W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2054 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Nucleolar RNA-associated protein (NRAP)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g63810 GI:15222538
Caenorhabditis elegans (Cel) CE26147 GI:17537391
Drosophila melanogaster (Dme) 7300124 GI:7300124
Homo sapiens (Hsa) Hs18644728
(NOL6)		 GI:18644728 Q9H675
Homo sapiens (Hsa) Hs21218428 GI:18539469 Q9H675
Homo sapiens (Hsa) Hs21218436 GI:18539467 Q9H675
Saccharomyces cerevisiae (Sce) YGR090w
(S000003322)		 GI:6321527 P53254
Schizosaccharomyces pombe (Spo) SPBC776.08c GI:19113115 O94676


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000794 condensed nuclear chromosome C
ISS
HsaNOL6
GO:0005575 cellular_component C
ND
AthAt1g63810
GO:0005634 nucleus C
IDA
SceS000003322
SpoSPBC776.08c
GO:0005730 nucleolus C
IDA
SceS000003322
SpoSPBC776.08c
ISS
HsaNOL6
SpoSPBC776.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC776.08c
GO:0030686 90S preribosome C
IDA
SceS000003322
GO:0032040 small-subunit processome C
IDA
SceS000003322
GO:0032545 CURI complex C
IDA
SceS000003322
GO:0034456 UTP-C complex C
IDA
SceS000003322
GO:0003674 molecular_function F
ND
AthAt1g63810
SceS000003322
GO:0003723 RNA binding F
ISS
HsaNOL6
GO:0030515 snoRNA binding F
ISS
SpoSPBC776.08c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IC
SceS000003322
GO:0006364 rRNA processing P
IMP
SceS000003322
ISS
HsaNOL6
GO:0008150 biological_process P
ND
AthAt1g63810
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC776.08c
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC776.08c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
41505

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) NOL6 GI:18644728 Q9H675
Canis familiaris (Cfa) NOL6 GI:73971747
Mus musculus (Mmu) Nol6
(MGI:2140151)		 GI:118026904 Q3TB71
Rattus norvegicus (Rno) Nol6 GI:109474728
Drosophila melanogaster (Dme) CG12785
(FBgn0038410)		 GI:62484300
Anopheles gambiae (Aga) AgaP_AGAP003992 GI:158298261
Schizosaccharomyces pombe (Spo) SPBC776.08c GI:19113115 O94676
Saccharomyces cerevisiae (Sce) UTP22
(S000003322)		 GI:6321527 P53254
Kluyveromyces lactis (Kla) KLLA0D14806g GI:50307475
Eremothecium gossypii (Ego) AGOS_ADR029W GI:45187902
Magnaporthe grisea (Mgr) MGG_03270 GI:145608234
Neurospora crassa (Ncr) NCU09437.1 GI:32423383
Arabidopsis thaliana (Ath) AT1G63810 GI:145337144
Oryza sativa (Osa) Os12g0166500 GI:115487520


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000794 condensed nuclear chromosome C
IDA
MmuMGI:2140151
ISS
HsaNOL6
GO:0005575 cellular_component C
ND
AthAt1g63810
GO:0005634 nucleus C
IDA
SceS000003322
SpoSPBC776.08c
GO:0005730 nucleolus C
IDA
MmuMGI:2140151
SceS000003322
SpoSPBC776.08c
ISS
HsaNOL6
SpoSPBC776.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC776.08c
GO:0030686 90S preribosome C
IDA
SceS000003322
GO:0032040 small-subunit processome C
IDA
SceS000003322
GO:0032545 CURI complex C
IDA
SceS000003322
GO:0034456 UTP-C complex C
IDA
SceS000003322
GO:0003674 molecular_function F
ND
AthAt1g63810
SceS000003322
GO:0003723 RNA binding F
IDA
MmuMGI:2140151
ISS
HsaNOL6
GO:0030515 snoRNA binding F
ISS
SpoSPBC776.08c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IC
SceS000003322
GO:0006364 rRNA processing P
IMP
SceS000003322
ISS
HsaNOL6
GO:0008150 biological_process P
ND
AthAt1g63810
MmuMGI:2140151
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC776.08c
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC776.08c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2017

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6498 ENSANGP00000014202
Anopheles gambiae (Aga) aga6499 ENSANGP00000026137
Ashbya gossypii (Ago) ago1770 ADR029W
Arabidopsis thaliana (Ath) ath5585 At1g63810.1
Caenorhabditis elegans (Cel) cel19552 Y51H7C.11
(CE39192;
WBGene00021789)
Candida glabrata (Cgl) cgl1754 CAGL0G03003g
Cryptococcus neoformans (Cne) cne608 163.m02746
Dictyostelium discoideum (Ddi) ddi11301 DDB0183891
Debaryomyces hansenii (Dha) dha1721 DEHA0C06479g
Drosophila melanogaster (Dme) dme12899 CG12785-PA
(FBgn0038410)
Danio rerio (Dre) dre19814 ENSDARP00000006335
Danio rerio (Dre) dre19815 ENSDARP00000037424
Takifugu rubripes (Fru) fru9241 SINFRUP00000154210
Takifugu rubripes (Fru) fru9240 SINFRUP00000154211
Gallus gallus (Gga) gga27067 ENSGALP00000022874
Gallus gallus (Gga) gga27065 ENSGALP00000022875
Gallus gallus (Gga) gga27066 ENSGALP00000022876
Homo sapiens (Hsa) hsa31143 ENSP00000297990
(NOL6)		 Q9H6R4-1
Homo sapiens (Hsa) hsa31142 ENSP00000313978
(NOL6)		 Q9H6R4-3
Homo sapiens (Hsa) hsa31144 ENSP00000314336
(NOL6)		 Q9H6R4-2
Kluyveromyces lactis (Kla) kla2715 KLLA0D14806g
Mus musculus (Mmu) mmu17972 ENSMUSP00000030138
(MGI:2140151)		 Q8R5K4-1
Neurospora crassa (Ncr) ncr9193 NCU09437.2
Oryza sativa (Osa) osa46536 5709.m00128
Rattus norvegicus (Rno) rno22979 ENSRNOP00000014211
(RGD:1308033)		 B3STT7
Saccharomyces cerevisiae (Sce) sce2458 YGR090W
(S000003322)
Schizosaccharomyces pombe (Spo) spo1050 SPBC776.08c O94676
Yarrowia lipolytica (Yli) yli5173 YALI0E31625g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000794 condensed nuclear chromosome C
IDA
MmuMGI:2140151
ISS
CelWBGene00021789
GO:0005575 cellular_component C
ND
AthAt1g63810
GO:0005634 nucleus C
IDA
SceS000003322
SpoSPBC776.08c
GO:0005730 nucleolus C
IDA
MmuMGI:2140151
SceS000003322
SpoSPBC776.08c
ISS
CelWBGene00021789
SpoSPBC776.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC776.08c
GO:0030686 90S preribosome C
IDA
SceS000003322
GO:0032040 small-subunit processome C
IDA
SceS000003322
GO:0032545 CURI complex C
IDA
SceS000003322
GO:0034456 UTP-C complex C
IDA
SceS000003322
GO:0003674 molecular_function F
ND
AthAt1g63810
SceS000003322
GO:0003723 RNA binding F
IDA
MmuMGI:2140151
ISS
CelWBGene00021789
GO:0030515 snoRNA binding F
ISS
SpoSPBC776.08c
GO:0000003 reproduction P
IMP
CelWBGene00021789
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IC
SceS000003322
GO:0006364 rRNA processing P
IMP
SceS000003322
ISS
CelWBGene00021789
GO:0008150 biological_process P
ND
AthAt1g63810
MmuMGI:2140151
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC776.08c
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC776.08c
GO:0045824 negative regulation of innate immune
response		 P
IMP
CelWBGene00021789

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC776.08c
(O94676)		 YGR090W
(S000003322)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003322
SpoSPBC776.08c
GO:0005730 nucleolus C
IDA
SceS000003322
SpoSPBC776.08c
ISS
SpoSPBC776.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC776.08c
GO:0030686 90S preribosome C
IDA
SceS000003322
GO:0032040 small-subunit processome C
IDA
SceS000003322
GO:0032545 CURI complex C
IDA
SceS000003322
GO:0034456 UTP-C complex C
IDA
SceS000003322
GO:0003674 molecular_function F
ND
SceS000003322
GO:0030515 snoRNA binding F
ISS
SpoSPBC776.08c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IC
SceS000003322
GO:0006364 rRNA processing P
IMP
SceS000003322
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC776.08c
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC776.08c

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Search for gene by ID or name:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk