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Search term: YGR118W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPS23A
SGD link S000003350
Alternative ID YGR118W
Description Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal
Synonyms YGR118W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1749 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 40S ribosomal protein S23

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g09680 GI:6682246
Arabidopsis thaliana (Ath) At5g02960 GI:15242574
Caenorhabditis elegans (Cel) CE05747
(WBGene00004492)
GI:17542020 Q19877
Drosophila melanogaster (Dme) 7303214 GI:20129981
Homo sapiens (Hsa) Hs4506701
(RPS23)
GI:4506701 P62266
Homo sapiens (Hsa) Hs22042004 GI:22042004
Homo sapiens (Hsa) Hs20470197 GI:20470197
Saccharomyces cerevisiae (Sce) YGR118w
(S000003350)
GI:6321556 P32827
Saccharomyces cerevisiae (Sce) YPR132w
(S000006336)
GI:6321556 P32827
Schizosaccharomyces pombe (Spo) SPAC23C11.02c GI:19112979 P79057
Schizosaccharomyces pombe (Spo) SPBP4H10.13 GI:19112979 P79057
Encephalitozoon cuniculi (Ecu) ECU10g0400 GI:19074649 Q8SR65


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005730 nucleolus C
IDA
AthAt3g09680
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005829 cytosol C
EXP
HsaRPS23
GO:0005840 ribosome C
ISS
AthAt5g02960
At3g09680
NAS
HsaRPS23
GO:0022626 cytosolic ribosome C
IDA
AthAt3g09680
At5g02960
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt5g02960
At3g09680
HsaRPS23
SceS000006336
S000003350
ISS
SpoSPBP4H10.13
SPAC23C11.02c
GO:0003674 molecular_function F
ND
HsaRPS23
GO:0003735 structural constituent of ribosome F
IDA
SceS000003350
S000006336
ISS
AthAt5g02960
At3g09680
SpoSPBP4H10.13
SPAC23C11.02c
GO:0005515 protein binding F
IPI
HsaRPS23
GO:0000003 reproduction P
IMP
CelWBGene00004492
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IGI
SceS000003350
S000006336
GO:0002119 nematode larval development P
IMP
CelWBGene00004492
GO:0006412 translation P
IC
HsaRPS23
ISS
AthAt5g02960
At3g09680
SpoSPAC23C11.02c
SPBP4H10.13
GO:0006414 translational elongation P
EXP
HsaRPS23
GO:0006450 regulation of translational fidelity P
IGI
SceS000003350
S000006336
IMP
SceS000003350
S000006336
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004492
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004492
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle
P
IMP
CelWBGene00004492
GO:0040007 growth P
IMP
CelWBGene00004492
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004492

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
799

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPS23 GI:4506701 P62266
Pan troglodytes (Ptr) RPS23 GI:55624034
Canis familiaris (Cfa) RPS23 GI:57084757
Mus musculus (Mmu) Gm15450 GI:149250808
Mus musculus (Mmu) Rps23
(MGI:1913725)
GI:13195604 P62267
Rattus norvegicus (Rno) Rps23
(RGD:621039)
GI:17530965
Gallus gallus (Gga) RPS23 GI:118104399
Drosophila melanogaster (Dme) RpS23
(FBgn0033912)
GI:22024141
Caenorhabditis elegans (Cel) rps-23
(CE05747;
WBGene00004492)
GI:17542020 Q19877
Schizosaccharomyces pombe (Spo) rps23-2
(SPBP4H10.13)
GI:19112979 P79057
Schizosaccharomyces pombe (Spo) rps23
(SPAC23C11.02c)
GI:19114545 P79057
Saccharomyces cerevisiae (Sce) RPS23A
(S000003350)
GI:6321556 P32827
Saccharomyces cerevisiae (Sce) RPS23B
(S000006336)
GI:6325389
Kluyveromyces lactis (Kla) KLLA0B11231g GI:50304159
Eremothecium gossypii (Ego) AGOS_AAR108C GI:45184931
Magnaporthe grisea (Mgr) MGG_01066 GI:39973575
Arabidopsis thaliana (Ath) AT3G09680 GI:18398604
Plasmodium falciparum (Pfa) MAL3P2.27 GI:124504805


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1913725
GO:0005634 nucleus C
IDA
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005730 nucleolus C
IDA
AthAt3g09680
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005829 cytosol C
EXP
HsaRPS23
GO:0005840 ribosome C
ISS
AthAt3g09680
NAS
HsaRPS23
GO:0022626 cytosolic ribosome C
IDA
AthAt3g09680
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt3g09680
HsaRPS23
SceS000006336
S000003350
ISS
DmeFBgn0033912
SpoSPBP4H10.13
SPAC23C11.02c
GO:0003674 molecular_function F
ND
HsaRPS23
MmuMGI:1913725
GO:0003735 structural constituent of ribosome F
IDA
SceS000003350
S000006336
ISS
AthAt3g09680
DmeFBgn0033912
SpoSPBP4H10.13
SPAC23C11.02c
GO:0005515 protein binding F
IPI
HsaRPS23
GO:0000003 reproduction P
IMP
CelWBGene00004492
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IGI
SceS000003350
S000006336
GO:0002119 nematode larval development P
IMP
CelWBGene00004492
GO:0006412 translation P
IC
HsaRPS23
ISS
AthAt3g09680
DmeFBgn0033912
SpoSPAC23C11.02c
SPBP4H10.13
GO:0006414 translational elongation P
EXP
HsaRPS23
GO:0006450 regulation of translational fidelity P
IGI
SceS000003350
S000006336
IMP
SceS000003350
S000006336
GO:0008150 biological_process P
ND
MmuMGI:1913725
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004492
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004492
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle
P
IMP
CelWBGene00004492
GO:0040007 growth P
IMP
CelWBGene00004492
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004492

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_996

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3647 ENSANGP00000012229
Ashbya gossypii (Ago) ago294 AAR108C
Arabidopsis thaliana (Ath) ath13047 At3g09680.1
Arabidopsis thaliana (Ath) ath22448 At5g02960.1
Caenorhabditis elegans (Cel) cel7586 F28D1.7
(CE05747;
WBGene00004492)
Candida glabrata (Cgl) cgl4290 CAGL0L04840g
Cryptococcus neoformans (Cne) cne4517 177.m03278
Dictyostelium discoideum (Ddi) ddi11613 DDB0231062
Debaryomyces hansenii (Dha) dha3633 DEHA0E08855g
Drosophila melanogaster (Dme) dme5035 CG8415-PA
(FBgn0033912)
Danio rerio (Dre) dre11987 ENSDARP00000031315
Danio rerio (Dre) dre11988 ENSDARP00000035273
Encephalitozoon cuniculi (Ecu) ecu565 19074649
Takifugu rubripes (Fru) fru17595 SINFRUP00000163512
Gallus gallus (Gga) gga28006 ENSGALP00000025130
(RPS23)
Homo sapiens (Hsa) hsa25465 ENSP00000296674
(RPS23)
P62266
Kluyveromyces lactis (Kla) kla1027 KLLA0B11231g
Mus musculus (Mmu) mmu25774 ENSMUSP00000080156
Mus musculus (Mmu) mmu7343 ENSMUSP00000080710
Mus musculus (Mmu) mmu16537 ENSMUSP00000080726
Neurospora crassa (Ncr) ncr1507 NCU01552.2
Oryza sativa (Osa) osa32191 4448.m00143
Oryza sativa (Osa) osa34049 4659.m00172
Oryza sativa (Osa) osa34070 4659.m00219
Oryza sativa (Osa) osa62906 6683.m00181
Oryza sativa (Osa) osa63119 6700.m00180
Plasmodium falciparum (Pfa) pfa2723 PFC0290w
Rattus norvegicus (Rno) rno15329 ENSRNOP00000022348
(RGD:621039)
P62268
Rattus norvegicus (Rno) rno10368 ENSRNOP00000050533
Saccharomyces cerevisiae (Sce) sce2488 YGR118W
(S000003350)
Saccharomyces cerevisiae (Sce) sce6588 YPR132W
(S000006336)
Schizosaccharomyces pombe (Spo) spo3329 SPAC23C11.02c P79057
Schizosaccharomyces pombe (Spo) spo1844 SPBP4H10.13 P79057
Yarrowia lipolytica (Yli) yli717 YALI0A20746g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005730 nucleolus C
IDA
AthAt3g09680
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005840 ribosome C
ISS
AthAt5g02960
At3g09680
GO:0022626 cytosolic ribosome C
IDA
AthAt3g09680
At5g02960
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt5g02960
At3g09680
SceS000006336
S000003350
ISS
DmeFBgn0033912
PfaPFC0290w
SpoSPBP4H10.13
SPAC23C11.02c
GO:0003735 structural constituent of ribosome F
IDA
SceS000003350
S000006336
ISS
AthAt5g02960
At3g09680
DmeFBgn0033912
SpoSPBP4H10.13
SPAC23C11.02c
GO:0000003 reproduction P
IMP
CelWBGene00004492
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IGI
SceS000003350
S000006336
GO:0002119 nematode larval development P
IMP
CelWBGene00004492
GO:0006412 translation P
ISS
AthAt5g02960
At3g09680
DmeFBgn0033912
SpoSPAC23C11.02c
SPBP4H10.13
GO:0006450 regulation of translational fidelity P
IGI
SceS000003350
S000006336
IMP
SceS000003350
S000006336
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004492
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004492
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle
P
IMP
CelWBGene00004492
GO:0040007 growth P
IMP
CelWBGene00004492
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004492

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBP4H10.13
(P79057)
YGR118W
(S000003350)
SPAC23C11.02c
(P79057)
YGR118W
(S000003350)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23C11.02c
SPBP4H10.13
GO:0005730 nucleolus C
IDA
SpoSPAC23C11.02c
SPBP4H10.13
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000003350
ISS
SpoSPBP4H10.13
SPAC23C11.02c
GO:0003735 structural constituent of ribosome F
IDA
SceS000003350
ISS
SpoSPBP4H10.13
SPAC23C11.02c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IGI
SceS000003350
GO:0006412 translation P
ISS
SpoSPAC23C11.02c
SPBP4H10.13
GO:0006450 regulation of translational fidelity P
IGI
SceS000003350
IMP
SceS000003350

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Query species:

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GO info in one table:

s.khadayate@ucl.ac.uk