YOGY Home YOGY Help

Search term: YGR135W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRE9
SGD link S000003367
Alternative ID YGR135W
Description Alpha 3 subunit of the 20S proteasome, the only nonessential 20S subunit; may be replaced by the alpha 4 subunit (Pre6p) under stress conditions to create a more active proteasomal isoform
Synonyms YGR135W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0178 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING 20S proteasome, regulatory subunit alpha type PSMA4/PRE9

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g22110 GI:15233268
Arabidopsis thaliana (Ath) At4g15160_2 GI:15233717
Caenorhabditis elegans (Cel) CE23243 GI:17508489
Drosophila melanogaster (Dme) 7291219
(FBgn0003150)
GI:17136420
Drosophila melanogaster (Dme) 7302012 GI:12229947
Homo sapiens (Hsa) Hs4506185 GI:4506185 P25789
Saccharomyces cerevisiae (Sce) YGR135w
(S000003367)
GI:6321574 P23638
Schizosaccharomyces pombe (Spo) SPAC31A2.17c GI:19113841
Encephalitozoon cuniculi (Ecu) ECU05g1340 GI:19173674 Q8SRU7
Arabidopsis thaliana (Ath) At3g22110 GI:15233268
Arabidopsis thaliana (Ath) At4g15160_2 GI:15233717
Caenorhabditis elegans (Cel) CE23243 GI:17508489
Drosophila melanogaster (Dme) 7291219
(FBgn0003150)
GI:17136420
Drosophila melanogaster (Dme) 7302012 GI:12229947
Homo sapiens (Hsa) Hs4506185 GI:4506185 P25789
Saccharomyces cerevisiae (Sce) YGR135w
(S000003367)
GI:6321574 P23638
Schizosaccharomyces pombe (Spo) SPAC31A2.17c GI:19113841
Encephalitozoon cuniculi (Ecu) ECU05g1340 GI:19173674 Q8SRU7
Arabidopsis thaliana (Ath) At3g22110 GI:15233268
Arabidopsis thaliana (Ath) At4g15160_2 GI:15233717
Caenorhabditis elegans (Cel) CE23243 GI:17508489
Drosophila melanogaster (Dme) 7291219
(FBgn0003150)
GI:17136420
Drosophila melanogaster (Dme) 7302012 GI:12229947
Homo sapiens (Hsa) Hs4506185 GI:4506185 P25789
Saccharomyces cerevisiae (Sce) YGR135w
(S000003367)
GI:6321574 P23638
Schizosaccharomyces pombe (Spo) SPAC31A2.17c GI:19113841
Encephalitozoon cuniculi (Ecu) ECU05g1340 GI:19173674 Q8SRU7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000003367
GO:0005739 mitochondrion C
IC
SceS000003367
GO:0005773 vacuole C
IDA
AthAt3g22110
GO:0005839 proteasome core complex C
TAS
AthAt3g22110
GO:0019773 proteasome core complex, alpha-subunit
complex
C
IDA
SceS000003367
GO:0022626 cytosolic ribosome C
IDA
AthAt3g22110
GO:0034515 proteasome storage granule C
IDA
SceS000003367
GO:0042175 nuclear membrane-endoplasmic reticulum
network
C
IC
SceS000003367
GO:0003674 molecular_function F
ND
SceS000003367
GO:0008233 peptidase activity F
ISS
AthAt3g22110
GO:0008289 lipid binding F
ISS
AthAt4g15160
GO:0006508 proteolysis P
RCA
SceS000003367
GO:0006511 ubiquitin-dependent protein catabolic
process
P
TAS
AthAt3g22110
GO:0006869 lipid transport P
ISS
AthAt4g15160
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process
P
IDA
SceS000003367
GO:0030435 sporulation resulting in formation of a cellular
spore
P
RCA
SceS000003367
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process
P
IDA
SceS000003367
GO:0046686 response to cadmium ion P
IEP
AthAt3g22110
GO:0080129 proteasome core complex assembly P
IMP
SceS000003367

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2083

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PSMA4 GI:156713442
Pan troglodytes (Ptr) PSMA4 GI:114658354
Canis familiaris (Cfa) PSMA4 GI:73974928
Mus musculus (Mmu) Psma4
(MGI:1347060)
GI:6755196 Q3TL95
Rattus norvegicus (Rno) Psma4
(RGD:61846)
GI:8394069
Gallus gallus (Gga) PSMA4 GI:50752781
Drosophila melanogaster (Dme) Pros29
(FBgn0003150)
GI:17136420
Anopheles gambiae (Aga) AgaP_AGAP004960 GI:158293714
Caenorhabditis elegans (Cel) pas-3
(CE30307;
WBGene00003924)
GI:25143215
Schizosaccharomyces pombe (Spo) SPAC13C5.01c GI:67989576 Q09682
Saccharomyces cerevisiae (Sce) PRE9
(S000003367)
GI:6321574 P23638
Kluyveromyces lactis (Kla) KLLA0E03817g GI:50308239
Eremothecium gossypii (Ego) AGOS_AFR318W GI:45198836
Magnaporthe grisea (Mgr) MGG_08343 GI:39946336
Neurospora crassa (Ncr) NCU05942.1 GI:32410633
Arabidopsis thaliana (Ath) PAC1 GI:15233268
Oryza sativa (Osa) Os06g0167600 GI:115466646
Oryza sativa (Osa) Os06g0176000 GI:115466708
Plasmodium falciparum (Pfa) PF13_0282 GI:124513788


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000502 proteasome complex C
TAS
HsaPSMA4
GO:0005634 nucleus C
IC
SceS000003367
SpoSPAC13C5.01c
IDA
SpoSPAC13C5.01c
GO:0005739 mitochondrion C
IC
SceS000003367
GO:0005773 vacuole C
IDA
AthPAC1
GO:0005829 cytosol C
IDA
SpoSPAC13C5.01c
GO:0005839 proteasome core complex C
TAS
AthPAC1
GO:0019773 proteasome core complex, alpha-subunit
complex
C
IDA
SceS000003367
ISS
SpoSPAC13C5.01c
GO:0022626 cytosolic ribosome C
IDA
AthPAC1
GO:0034515 proteasome storage granule C
IDA
SceS000003367
GO:0042175 nuclear membrane-endoplasmic reticulum
network
C
IC
SceS000003367
GO:0003674 molecular_function F
ND
SceS000003367
GO:0004175 endopeptidase activity F
ISS
SpoSPAC13C5.01c
GO:0005515 protein binding F
IPI
HsaPSMA4
GO:0008233 peptidase activity F
ISS
AthPAC1
GO:0042802 identical protein binding F
IPI
HsaPSMA4
GO:0000003 reproduction P
IMP
CelWBGene00003924
GO:0000278 mitotic cell cycle P
IC
SpoSPAC13C5.01c
GO:0002119 nematode larval development P
IMP
CelWBGene00003924
GO:0006508 proteolysis P
RCA
SceS000003367
GO:0006511 ubiquitin-dependent protein catabolic
process
P
TAS
AthPAC1
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003924
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPAC13C5.01c
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003924
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process
P
IDA
SceS000003367
GO:0030435 sporulation resulting in formation of a cellular
spore
P
RCA
SceS000003367
GO:0031145 anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic
process
P
EXP
HsaPSMA4
GO:0040007 growth P
IMP
CelWBGene00003924
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003924
GO:0040011 locomotion P
IMP
CelWBGene00003924
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003924
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process
P
IDA
SceS000003367
ISS
SpoSPAC13C5.01c
GO:0046686 response to cadmium ion P
IEP
AthPAC1
GO:0051436 negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle
P
EXP
HsaPSMA4
GO:0051437 positive regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle
P
EXP
HsaPSMA4
GO:0080129 proteasome core complex assembly P
IMP
SceS000003367

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1931

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga319 ENSANGP00000011441
Ashbya gossypii (Ago) ago3510 AFR318W
Arabidopsis thaliana (Ath) ath14519 At3g22110.1
Caenorhabditis elegans (Cel) cel17618 Y110A7A.14
(CE30307;
WBGene00003924)
Candida glabrata (Cgl) cgl2971 CAGL0I10406g
Cryptococcus neoformans (Cne) cne1159 180.m00087
Dictyostelium discoideum (Ddi) ddi12711 DDB0214953
Debaryomyces hansenii (Dha) dha1288 DEHA0B13970g
Drosophila melanogaster (Dme) dme6245 CG9327-PA
(FBgn0003150)
Danio rerio (Dre) dre16533 ENSDARP00000029592
Encephalitozoon cuniculi (Ecu) ecu1236 19173674
Takifugu rubripes (Fru) fru27925 SINFRUP00000129117
Gallus gallus (Gga) gga3715 ENSGALP00000004807
(PSMA4)
Homo sapiens (Hsa) hsa11007 ENSP00000044462
(PSMA4)
P25789
Kluyveromyces lactis (Kla) kla3119 KLLA0E03817g
Mus musculus (Mmu) mmu27660 ENSMUSP00000034848
(MGI:1347060)
Q9R1P0
Neurospora crassa (Ncr) ncr5776 NCU05942.2
Oryza sativa (Osa) osa14618 3017.m00163
Oryza sativa (Osa) osa14672 3017.m00173
Oryza sativa (Osa) osa15089 3025.m00147
Plasmodium falciparum (Pfa) pfa3799 PF13_0282
Rattus norvegicus (Rno) rno28634 ENSRNOP00000018173
(RGD:61846)
P21670
Saccharomyces cerevisiae (Sce) sce2507 YGR135W
(S000003367)
Schizosaccharomyces pombe (Spo) spo4329 SPAC13C5.01c Q09682
Yarrowia lipolytica (Yli) yli2491 YALI0C19382g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000003367
SpoSPAC13C5.01c
IDA
SpoSPAC13C5.01c
GO:0005739 mitochondrion C
IC
SceS000003367
GO:0005773 vacuole C
IDA
AthAt3g22110
GO:0005829 cytosol C
IDA
SpoSPAC13C5.01c
GO:0005839 proteasome core complex C
TAS
AthAt3g22110
GO:0019773 proteasome core complex, alpha-subunit
complex
C
IDA
SceS000003367
ISS
SpoSPAC13C5.01c
GO:0022626 cytosolic ribosome C
IDA
AthAt3g22110
GO:0034515 proteasome storage granule C
IDA
SceS000003367
GO:0042175 nuclear membrane-endoplasmic reticulum
network
C
IC
SceS000003367
GO:0003674 molecular_function F
ND
SceS000003367
GO:0004175 endopeptidase activity F
ISS
SpoSPAC13C5.01c
GO:0008233 peptidase activity F
ISS
AthAt3g22110
GO:0000003 reproduction P
IMP
CelWBGene00003924
GO:0000278 mitotic cell cycle P
IC
SpoSPAC13C5.01c
GO:0002119 nematode larval development P
IMP
CelWBGene00003924
GO:0006508 proteolysis P
RCA
SceS000003367
GO:0006511 ubiquitin-dependent protein catabolic
process
P
TAS
AthAt3g22110
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003924
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPAC13C5.01c
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003924
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process
P
IDA
SceS000003367
GO:0030435 sporulation resulting in formation of a cellular
spore
P
RCA
SceS000003367
GO:0040007 growth P
IMP
CelWBGene00003924
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003924
GO:0040011 locomotion P
IMP
CelWBGene00003924
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003924
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process
P
IDA
SceS000003367
ISS
SpoSPAC13C5.01c
GO:0046686 response to cadmium ion P
IEP
AthAt3g22110
GO:0080129 proteasome core complex assembly P
IMP
SceS000003367

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC13C5.01c
(Q09682)
YGR135W
(S000003367)