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Search term: YGR271W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SLH1
SGD link S000003503
Alternative ID YGR271W
Description Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses
Synonyms YGR271W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0952 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA/RNA helicase MER3/SLH1, DEAD-box superfamily

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g27730 GI:15232253
Arabidopsis thaliana (Ath) At5g61140 GI:15240150
Caenorhabditis elegans (Cel) CE20305
(WBGene00013191)
GI:17537519
Drosophila melanogaster (Dme) 7300033 GI:7300033
Homo sapiens (Hsa) Hs14747366 GI:14747366
Homo sapiens (Hsa) Hs18548973 GI:18548973
Saccharomyces cerevisiae (Sce) YGL251c
(S000003220)
GI:9755332 P51979
Saccharomyces cerevisiae (Sce) YGR271w
(S000003503)
GI:6321710 P53327
Schizosaccharomyces pombe (Spo) SPBC13G1.10c GI:19113352 O60072
Encephalitozoon cuniculi (Ecu) ECU07g0830 GI:19074505 Q8SRJ6
Arabidopsis thaliana (Ath) At3g27730 GI:15232253
Arabidopsis thaliana (Ath) At5g61140 GI:15240150
Caenorhabditis elegans (Cel) CE20305
(WBGene00013191)
GI:17537519
Drosophila melanogaster (Dme) 7300033 GI:7300033
Homo sapiens (Hsa) Hs14747366 GI:14747366
Homo sapiens (Hsa) Hs18548973 GI:18548973
Saccharomyces cerevisiae (Sce) YGL251c
(S000003220)
GI:9755332 P51979
Saccharomyces cerevisiae (Sce) YGR271w
(S000003503)
GI:6321710 P53327
Schizosaccharomyces pombe (Spo) SPBC13G1.10c GI:19113352 O60072
Encephalitozoon cuniculi (Ecu) ECU07g0830 GI:19074505 Q8SRJ6


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003220
GO:0005737 cytoplasm C
IDA
SceS000003503
ISS
SpoSPBC13G1.10c
GO:0005829 cytosol C
IDA
SpoSPBC13G1.10c
GO:0003678 DNA helicase activity F
IDA
SceS000003220
ISS
AthAt3g27730
GO:0003724 RNA helicase activity F
ISS
SceS000003503
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC13G1.10c
GO:0005524 ATP binding F
ISS
AthAt3g27730
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g27730
At5g61140
GO:0016887 ATPase activity F
RCA
SceS000003220
GO:0006268 DNA unwinding involved in replication P
IDA
SceS000003220
GO:0006417 regulation of translation P
IGI
SceS000003503
IMP
SceS000003503
ISS
SpoSPBC13G1.10c
GO:0007126 meiosis P
IDA
SceS000003220
GO:0007129 synapsis P
IGI
SceS000003220
IMP
SceS000003220
GO:0007131 reciprocal meiotic recombination P
IMP
AthAt3g27730
SceS000003220
GO:0051026 chiasma assembly P
IMP
AthAt3g27730

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
4973

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) ASCC3 GI:76880486
Pan troglodytes (Ptr) ASCC3 GI:114608641
Canis familiaris (Cfa) ASCC3 GI:73973611
Mus musculus (Mmu) Ascc3
(MGI:1925237)
GI:82932285 A0PJC2
Rattus norvegicus (Rno) Ascc3 GI:109509664
Gallus gallus (Gga) ASCC3 GI:50744652
Drosophila melanogaster (Dme) CG5205
(FBgn0038344)
GI:24647182
Anopheles gambiae (Aga) AgaP_AGAP001234 GI:158302361
Caenorhabditis elegans (Cel) Y54E2A.6
(CE20305;
WBGene00013191)
GI:17537519
Schizosaccharomyces pombe (Spo) SPBC13G1.10c GI:19113352 O60072
Saccharomyces cerevisiae (Sce) SLH1
(S000003503)
GI:6321710 P53327
Kluyveromyces lactis (Kla) KLLA0A09889g GI:50302989
Eremothecium gossypii (Ego) AGOS_ABR142W GI:45185372
Magnaporthe grisea (Mgr) MGG_06124 GI:145603324
Neurospora crassa (Ncr) NCU08267.1 GI:32416990
Arabidopsis thaliana (Ath) AT5G61140 GI:30697481
Oryza sativa (Osa) Os03g0213400 GI:115451523
Plasmodium falciparum (Pfa) PF14_0370 GI:124809317


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1925237
PfaPF14_0370
GO:0005622 intracellular C
IDA
HsaASCC3
GO:0005682 U5 snRNP C
ISS
DmeFBgn0038344
GO:0005737 cytoplasm C
IDA
SceS000003503
ISS
SpoSPBC13G1.10c
GO:0005829 cytosol C
IDA
SpoSPBC13G1.10c
GO:0030532 small nuclear ribonucleoprotein
complex
C
ISS
DmeFBgn0038344
GO:0003674 molecular_function F
ND
MmuMGI:1925237
GO:0003724 RNA helicase activity F
ISS
DmeFBgn0038344
SceS000003503
GO:0004004 ATP-dependent RNA helicase activity F
ISS
PfaPF14_0370
SpoSPBC13G1.10c
GO:0004386 helicase activity F
ISS
DmeFBgn0038344
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g61140
GO:0000398 nuclear mRNA splicing, via spliceosome P
ISS
DmeFBgn0038344
GO:0006417 regulation of translation P
IGI
SceS000003503
IMP
SceS000003503
ISS
SpoSPBC13G1.10c
GO:0008150 biological_process P
ND
MmuMGI:1925237
PfaPF14_0370

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_184

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3615 ENSANGP00000009625
Anopheles gambiae (Aga) aga3309 ENSANGP00000013875
Ashbya gossypii (Ago) ago734 ABR142W
Ashbya gossypii (Ago) ago4424 AGR113W
Arabidopsis thaliana (Ath) ath2248 At1g20960.1
Arabidopsis thaliana (Ath) ath11401 At2g42270.1
Arabidopsis thaliana (Ath) ath28204 At5g61140.1
Caenorhabditis elegans (Cel) cel19021 Y46G5A.4
(CE21971;
WBGene00012896)
Caenorhabditis elegans (Cel) cel19731 Y54E2A.6
(CE20305;
WBGene00013191)
Candida glabrata (Cgl) cgl1648 CAGL0G00506g
Candida glabrata (Cgl) cgl4595 CAGL0L11946g
Cryptococcus neoformans (Cne) cne238 162.m02712
Cryptococcus neoformans (Cne) cne1263 180.m00204
Dictyostelium discoideum (Ddi) ddi8255 DDB0188864
Dictyostelium discoideum (Ddi) ddi1756 DDB0190760
Debaryomyces hansenii (Dha) dha6313 DEHA0G13761g
Debaryomyces hansenii (Dha) dha6668 DEHA0G21681g
Drosophila melanogaster (Dme) dme12782 CG5205-PA
(FBgn0038344)
Drosophila melanogaster (Dme) dme9687 CG5931-PA
(FBgn0036548)
Danio rerio (Dre) dre23544 ENSDARP00000011862
Danio rerio (Dre) dre23545 ENSDARP00000015906
Danio rerio (Dre) dre23543 ENSDARP00000041242
Encephalitozoon cuniculi (Ecu) ecu1569 19074342
Encephalitozoon cuniculi (Ecu) ecu1891 19074505
Takifugu rubripes (Fru) fru12328 SINFRUP00000131641
Takifugu rubripes (Fru) fru8033 SINFRUP00000160675
Takifugu rubripes (Fru) fru8032 SINFRUP00000160676
Takifugu rubripes (Fru) fru8031 SINFRUP00000160681
Takifugu rubripes (Fru) fru12330 SINFRUP00000165828
Takifugu rubripes (Fru) fru12329 SINFRUP00000166656
Takifugu rubripes (Fru) fru12331 SINFRUP00000172889
Takifugu rubripes (Fru) fru12327 SINFRUP00000173745
Gallus gallus (Gga) gga25148 ENSGALP00000005494
Gallus gallus (Gga) gga25149 ENSGALP00000005495
(ASCC3L1)
Q5F463
Gallus gallus (Gga) gga26366 ENSGALP00000021714
Gallus gallus (Gga) gga15644 ENSGALP00000024888
Gallus gallus (Gga) gga15640 ENSGALP00000024889
(ASCC3)
Gallus gallus (Gga) gga15641 ENSGALP00000024890
Gallus gallus (Gga) gga15642 ENSGALP00000024891
Gallus gallus (Gga) gga15643 ENSGALP00000024892
Homo sapiens (Hsa) hsa27531 ENSP00000262902
Homo sapiens (Hsa) hsa18247 ENSP00000317123
(SNRNP200)
O75643-1
Homo sapiens (Hsa) hsa27530 ENSP00000320252
(ASCC3)
Q8N3C0
Homo sapiens (Hsa) hsa18248 ENSP00000326937
(SNRNP200)
C9JAQ9
Kluyveromyces lactis (Kla) kla429 KLLA0A09889g
Kluyveromyces lactis (Kla) kla1994 KLLA0C17798g
Mus musculus (Mmu) mmu15445 ENSMUSP00000003757
Mus musculus (Mmu) mmu2116 ENSMUSP00000036726
(MGI:1925237)
Q6PB36
Mus musculus (Mmu) mmu15446 ENSMUSP00000061054
(MGI:2444401)
Q8BYH6
Neurospora crassa (Ncr) ncr2601 NCU02685.2
Neurospora crassa (Ncr) ncr8056 NCU08267.2
Oryza sativa (Osa) osa25259 3841.m00149
Oryza sativa (Osa) osa28710 4254.m00131
Oryza sativa (Osa) osa65026 6725.m00128
Oryza sativa (Osa) osa73926 7283.m00098
Plasmodium falciparum (Pfa) pfa1821 PF14_0370
Plasmodium falciparum (Pfa) pfa3301 PFD1060w
Rattus norvegicus (Rno) rno19655 ENSRNOP00000016835
(RGD:1561120)
Rattus norvegicus (Rno) rno19654 ENSRNOP00000048598
(RGD:1561120)
Q4KLH1
Saccharomyces cerevisiae (Sce) sce1921 YER172C
(S000000974)
Saccharomyces cerevisiae (Sce) sce2655 YGR271W
(S000003503)
Schizosaccharomyces pombe (Spo) spo3123 SPAC9.03c Q9UT24
Schizosaccharomyces pombe (Spo) spo2636 SPBC13G1.10c O60072
Yarrowia lipolytica (Yli) yli1312 YALI0B13904g
Yarrowia lipolytica (Yli) yli6214 YALI0F20724g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1925237
MGI:2444401
PfaPF14_0370
GO:0005634 nucleus C
IC
DmeFBgn0036548
IDA
SpoSPAC9.03c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC9.03c
ISS
DmeFBgn0036548
PfaPFD1060w
GO:0005682 U5 snRNP C
IDA
SceS000000974
ISS
DmeFBgn0036548
FBgn0038344
SpoSPAC9.03c
GO:0005688 U6 snRNP C
RCA
SceS000000974
GO:0005730 nucleolus C
IDA
AthAt1g20960
GO:0005737 cytoplasm C
IDA
SceS000003503
ISS
SpoSPBC13G1.10c
GO:0005829 cytosol C
IDA
SpoSPBC13G1.10c
SPAC9.03c
GO:0016020 membrane C
IDA
AthAt1g20960
GO:0030532 small nuclear ribonucleoprotein
complex
C
ISS
DmeFBgn0038344
FBgn0036548
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000974
ISS
SpoSPAC9.03c
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036548
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0036548
GO:0003674 molecular_function F
ND
MmuMGI:1925237
MGI:2444401
GO:0003724 RNA helicase activity F
ISS
DmeFBgn0036548
FBgn0038344
SceS000003503
GO:0004004 ATP-dependent RNA helicase activity F
IDA
SceS000000974
IMP
SceS000000974
ISS
DmeFBgn0036548
PfaPF14_0370
PFD1060w
SpoSPBC13G1.10c
SPAC9.03c
GO:0004386 helicase activity F
ISS
DmeFBgn0038344
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g61140
At1g20960
At2g42270
GO:0000003 reproduction P
IMP
CelWBGene00012896
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome
P
IMP
DmeFBgn0036548
GO:0000388 spliceosome conformational change to release U4
(or U4atac) and U1 (or U11)
P
IMP
SceS000000974
GO:0000393 spliceosomal conformational changes to generate
catalytic conformation
P
IGI
SpoSPAC9.03c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036548
ISS
DmeFBgn0038344
GO:0002119 nematode larval development P
IMP
CelWBGene00012896
GO:0006200 ATP catabolic process P
ISS
SpoSPAC9.03c
GO:0006417 regulation of translation P
IGI
SceS000003503
IMP
SceS000003503
ISS
SpoSPBC13G1.10c
GO:0008150 biological_process P
ND
MmuMGI:1925237
MGI:2444401
PfaPF14_0370
GO:0008380 RNA splicing P
ISS
DmeFBgn0036548
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00012896
GO:0009793 embryo development ending in seed
dormancy
P
NAS
AthAt1g20960
GO:0016071 mRNA metabolic process P
RCA
SceS000000974
GO:0018991 oviposition P
IMP
CelWBGene00012896
GO:0040007 growth P
IMP
CelWBGene00012896

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC13G1.10c
(O60072)
YGR271W
(S000003503)