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Search term: YGR276C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RNH70
SGD link S000003508
Alternative ID YGR276C
Description 3'-5' exoribonuclease; required for maturation of 3' ends of 5S rRNA and tRNA-Arg3 from dicistronic transcripts
Synonyms YGR276C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2248 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 3'-5' exonuclease

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g50090 GI:15229667
Arabidopsis thaliana (Ath) At3g50100 GI:15229668
Arabidopsis thaliana (Ath) At5g05540 GI:15239167
Arabidopsis thaliana (Ath) At5g25800 GI:15239499
Arabidopsis thaliana (Ath) At5g67240 GI:15240253
Caenorhabditis elegans (Cel) CE07923
(WBGene00015462)
GI:17557646 O16312
Caenorhabditis elegans (Cel) CE24469
(WBGene00013244)
GI:17556314 Q9U220
Caenorhabditis elegans (Cel) CE25823 GI:7206618
Drosophila melanogaster (Dme) 7290209 GI:7290209
Drosophila melanogaster (Dme) 7295335 GI:7295335
Drosophila melanogaster (Dme) 7301627 GI:7301627
Homo sapiens (Hsa) Hs13569913 GI:13569913
Homo sapiens (Hsa) Hs14764743 GI:14764743
Homo sapiens (Hsa) Hs22045569 GI:22045569
Homo sapiens (Hsa) Hs22047614 GI:22047614
Homo sapiens (Hsa) Hs22050759 GI:22050759
Homo sapiens (Hsa) Hs22050764 GI:22050764
Homo sapiens (Hsa) Hs22050790 GI:22050790
Saccharomyces cerevisiae (Sce) YGR276c
(S000003508)
GI:6321715 P53331
Saccharomyces cerevisiae (Sce) YLR107w
(S000004097)
GI:6323136 Q12090
Schizosaccharomyces pombe (Spo) SPAC1782.08c GI:19115627 Q9P7H2
Schizosaccharomyces pombe (Spo) SPAC637.09 GI:19115539 O94443
Encephalitozoon cuniculi (Ecu) ECU07g0380 GI:19074460 Q8SRL4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
ISS
AthAt5g25800
At3g50090
At5g67240
At5g05540
At3g50100
GO:0005634 nucleus C
IDA
SceS000004097
S000003508
SpoSPAC1782.08c
SPAC637.09
ISS
SpoSPAC1782.08c
SPAC637.09
GO:0005737 cytoplasm C
IDA
SceS000004097
ISS
SpoSPAC1782.08c
GO:0005739 mitochondrion C
IDA
SpoSPAC1782.08c
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000004097
S000003508
GO:0004527 exonuclease activity F
ISS
AthAt5g25800
At5g67240
At5g05540
At3g50100
At3g50090
GO:0008408 3'-5' exonuclease activity F
IDA
AthAt3g50100
ISS
SceS000004097
S000003508
SpoSPAC1782.08c
SPAC637.09
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P
IGI
SceS000003508
S000004097
ISS
SpoSPAC1782.08c
GO:0002107 generation of mature 3'-end of 5S rRNA generated
by RNA polymerase III
P
IMP
SceS000003508
GO:0006396 RNA processing P
ISS
SpoSPAC637.09
SPAC1782.08c
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00013244
GO:0008150 biological_process P
ND
AthAt3g50090
GO:0010587 miRNA catabolic process P
IDA
AthAt3g50100
GO:0034415 tRNA 3'-trailer cleavage, exonucleolytic P
IGI
SceS000003508
IMP
SceS000003508
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000004097
S000003508
ISS
SpoSPAC1782.08c
GO:0043628 ncRNA 3'-end processing P
IMP
SceS000004097
ISS
SpoSPAC1782.08c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
31653

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC637.09 GI:19115539 O94443
Saccharomyces cerevisiae (Sce) RNH70
(S000003508)
GI:6321715 P53331
Kluyveromyces lactis (Kla) KLLA0A10065g GI:50303005
Eremothecium gossypii (Ego) AGOS_AGL332W GI:45200765
Magnaporthe grisea (Mgr) MGG_10841 GI:39941984
Neurospora crassa (Ncr) NCU02961.1 GI:32419411
Arabidopsis thaliana (Ath) AT5G25800 GI:42568083
Oryza sativa (Osa) Os12g0188900 GI:115487690


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
ISS
AthAt5g25800
GO:0005634 nucleus C
IDA
SceS000003508
SpoSPAC637.09
ISS
SpoSPAC637.09
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000003508
GO:0004527 exonuclease activity F
ISS
AthAt5g25800
GO:0008408 3'-5' exonuclease activity F
ISS
SceS000003508
SpoSPAC637.09
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P
IGI
SceS000003508
GO:0002107 generation of mature 3'-end of 5S rRNA generated
by RNA polymerase III
P
IMP
SceS000003508
GO:0006396 RNA processing P
ISS
SpoSPAC637.09
GO:0034415 tRNA 3'-trailer cleavage, exonucleolytic P
IGI
SceS000003508
IMP
SceS000003508
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000003508

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_987

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga819 ENSANGP00000014161
Ashbya gossypii (Ago) ago3980 AGL332W
Arabidopsis thaliana (Ath) ath24852 At5g25800.1
Caenorhabditis elegans (Cel) cel1114 C05C8.5
(CE07923;
WBGene00015462)
Caenorhabditis elegans (Cel) cel19955 Y56A3A.33
(CE24469;
WBGene00013244)
Candida glabrata (Cgl) cgl1642 CAGL0G00374g
Cryptococcus neoformans (Cne) cne2835 183.m01794
Cryptococcus neoformans (Cne) cne2836 183.m01834
Dictyostelium discoideum (Ddi) ddi10259 DDB0183999
Debaryomyces hansenii (Dha) dha5655 DEHA0F28358g
Drosophila melanogaster (Dme) dme16113 CG14801-PA
(FBgn0024988)
Drosophila melanogaster (Dme) dme16110 CG14801-PB
(FBgn0024988)
Drosophila melanogaster (Dme) dme16112 CG14801-PC
(FBgn0024988)
Drosophila melanogaster (Dme) dme16111 CG14801-PD
(FBgn0024988)
Drosophila melanogaster (Dme) dme8255 CG8368-PA
(FBgn0035707)
Drosophila melanogaster (Dme) dme8254 CG8368-PB
(FBgn0035707)
Encephalitozoon cuniculi (Ecu) ecu1846 19074460
Takifugu rubripes (Fru) fru495 SINFRUP00000162725
Gallus gallus (Gga) gga24900 ENSGALP00000003496
Gallus gallus (Gga) gga24899 ENSGALP00000003497
Gallus gallus (Gga) gga24897 ENSGALP00000003498
(LOC427001)
Q5ZMH0
Gallus gallus (Gga) gga24898 ENSGALP00000003499
Homo sapiens (Hsa) hsa11773 ENSP00000261377
(LOC81691)
Q96IC2-1
Homo sapiens (Hsa) hsa11774 ENSP00000261378
(LOC81691)
Q96IC2-2
Homo sapiens (Hsa) hsa11775 ENSP00000320394
(LOC81691)
A8MPW8
Homo sapiens (Hsa) hsa30938 ENSP00000342193
Homo sapiens (Hsa) hsa30479 ENSP00000346494
Kluyveromyces lactis (Kla) kla437 KLLA0A10065g
Mus musculus (Mmu) mmu24978 ENSMUSP00000033218
(MGI:1919402)
Q7TSF9
Mus musculus (Mmu) mmu16613 ENSMUSP00000054044
Mus musculus (Mmu) mmu30770 ENSMUSP00000077555
Neurospora crassa (Ncr) ncr2866 NCU02961.2
Oryza sativa (Osa) osa72763 7065.m00143
Plasmodium falciparum (Pfa) pfa4392 PF13_0208
Rattus norvegicus (Rno) rno2870 ENSRNOP00000019654
(RGD:1305412)
A1A5R7
Rattus norvegicus (Rno) rno2872 ENSRNOP00000033225
Rattus norvegicus (Rno) rno2871 ENSRNOP00000036872
Rattus norvegicus (Rno) rno2869 ENSRNOP00000042833
Rattus norvegicus (Rno) rno16062 ENSRNOP00000044924
(RGD:1564472)
Rattus norvegicus (Rno) rno2868 ENSRNOP00000049988
Rattus norvegicus (Rno) rno16063 ENSRNOP00000050140
Saccharomyces cerevisiae (Sce) sce2660 YGR276C
(S000003508)
Schizosaccharomyces pombe (Spo) spo3196 SPAC637.09 O94443
Yarrowia lipolytica (Yli) yli1382 YALI0B15400g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1919402
GO:0005622 intracellular C
ISS
AthAt5g25800
GO:0005634 nucleus C
IDA
SceS000003508
SpoSPAC637.09
ISS
SpoSPAC637.09
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000003508
GO:0003674 molecular_function F
ND
MmuMGI:1919402
GO:0004527 exonuclease activity F
ISS
AthAt5g25800
GO:0008408 3'-5' exonuclease activity F
ISS
SceS000003508
SpoSPAC637.09
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P
IGI
SceS000003508
GO:0002107 generation of mature 3'-end of 5S rRNA generated
by RNA polymerase III
P
IMP
SceS000003508
GO:0006396 RNA processing P
ISS
SpoSPAC637.09
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00013244
GO:0008150 biological_process P
ND
MmuMGI:1919402
GO:0034415 tRNA 3'-trailer cleavage, exonucleolytic P
IGI
SceS000003508
IMP
SceS000003508
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000003508

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC637.09
(O94443)
YGR276C
(S000003508)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003508
SpoSPAC637.09
ISS
SpoSPAC637.09
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000003508
GO:0008408 3'-5' exonuclease activity F
ISS
SceS000003508
SpoSPAC637.09
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P
IGI
SceS000003508
GO:0002107 generation of mature 3'-end of 5S rRNA generated
by RNA polymerase III
P
IMP
SceS000003508
GO:0006396 RNA processing P
ISS
SpoSPAC637.09
GO:0034415 tRNA 3'-trailer cleavage, exonucleolytic P
IGI
SceS000003508
IMP
SceS000003508
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000003508

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk