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Search term: YHR012W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VPS29
SGD link S000001054
Alternative ID YHR012W
Description Endosomal protein that is a subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval
Synonyms YHR012W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3325 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Membrane coat complex Retromer, subunit VPS29/PEP11

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g47810 GI:15228262
Caenorhabditis elegans (Cel) CE23493 GI:17557149
Drosophila melanogaster (Dme) 7296116
(FBgn0031310)		 GI:19920498
Homo sapiens (Hsa) Hs17402912
(VPS29)		 GI:17402912 Q8N0S8
Homo sapiens (Hsa) Hs7706441 GI:7706441 Q8N0S8
Saccharomyces cerevisiae (Sce) YHR012w
(S000001054)		 GI:6321800 P38759
Schizosaccharomyces pombe (Spo) SPAC15E1.06 GI:19115219 Q9UTI5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC15E1.06
GO:0005768 endosome C
IDA
HsaVPS29
IMP
SpoSPAC15E1.06
IPI
SceS000001054
ISS
SpoSPAC15E1.06
GO:0005771 multivesicular body C
IDA
AthAt3g47810
GO:0005792 microsome C
IDA
AthAt3g47810
GO:0005829 cytosol C
IDA
SpoSPAC15E1.06
GO:0016020 membrane C
IDA
AthAt3g47810
GO:0030904 retromer complex C
IDA
AthAt3g47810
IMP
SceS000001054
SpoSPAC15E1.06
IPI
SceS000001054
ISS
AthAt3g47810
SpoSPAC15E1.06
GO:0030906 retromer complex, inner shell C
IPI
SceS000001054
GO:0004722 protein serine/threonine phosphatase
activity		 F
ISS
AthAt3g47810
GO:0008565 protein transporter activity F
IMP
SceS000001054
IPI
SceS000001054
GO:0016787 hydrolase activity F
ISS
SpoSPAC15E1.06
GO:0006623 protein targeting to vacuole P
IMP
AthAt3g47810
GO:0006886 intracellular protein transport P
IMP
SpoSPAC15E1.06
GO:0008333 endosome to lysosome transport P
ISS
AthAt3g47810
GO:0030437 ascospore formation P
IMP
SpoSPAC15E1.06
GO:0042147 retrograde transport, endosome to
Golgi		 P
IMP
SpoSPAC15E1.06
IPI
SceS000001054

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
101596

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) vps29
(SPAC15E1.06)		 GI:19115219 Q9UTI5
Saccharomyces cerevisiae (Sce) VPS29
(S000001054)		 GI:6321800 P38759
Kluyveromyces lactis (Kla) KLLA0E03311g GI:50308195
Eremothecium gossypii (Ego) AGOS_AFR411C GI:45198929
Magnaporthe grisea (Mgr) MGG_02524 GI:145606126
Neurospora crassa (Ncr) NCU01822.1 GI:32415565


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC15E1.06
GO:0005768 endosome C
IMP
SpoSPAC15E1.06
IPI
SceS000001054
ISS
SpoSPAC15E1.06
GO:0005829 cytosol C
IDA
SpoSPAC15E1.06
GO:0030904 retromer complex C
IMP
SceS000001054
SpoSPAC15E1.06
IPI
SceS000001054
ISS
SpoSPAC15E1.06
GO:0030906 retromer complex, inner shell C
IPI
SceS000001054
GO:0008565 protein transporter activity F
IMP
SceS000001054
IPI
SceS000001054
GO:0016787 hydrolase activity F
ISS
SpoSPAC15E1.06
GO:0006886 intracellular protein transport P
IMP
SpoSPAC15E1.06
GO:0030437 ascospore formation P
IMP
SpoSPAC15E1.06
GO:0042147 retrograde transport, endosome to
Golgi		 P
IMP
SpoSPAC15E1.06
IPI
SceS000001054

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1717

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4495 ENSANGP00000015419
Ashbya gossypii (Ago) ago3603 AFR411C
Arabidopsis thaliana (Ath) ath16076 At3g47810.1
Arabidopsis thaliana (Ath) ath16078 At3g47810.3
Caenorhabditis elegans (Cel) cel21587 ZK1128.8a
(CE34140;
WBGene00014234)
Caenorhabditis elegans (Cel) cel21588 ZK1128.8b
(CE34141)
Candida glabrata (Cgl) cgl1133 CAGL0E04422g
Cryptococcus neoformans (Cne) cne1967 181.m07945
Dictyostelium discoideum (Ddi) ddi9569 DDB0188107
Debaryomyces hansenii (Dha) dha6056 DEHA0G07953g
Drosophila melanogaster (Dme) dme200 CG4764-PA
(FBgn0031310)
Danio rerio (Dre) dre13351 ENSDARP00000047029
Danio rerio (Dre) dre13355 ENSDARP00000050254
Takifugu rubripes (Fru) fru4518 SINFRUP00000159336
Gallus gallus (Gga) gga7246 ENSGALP00000007202
(VPS29)
Gallus gallus (Gga) gga7409 ENSGALP00000009555
(LOC416931)
Homo sapiens (Hsa) hsa8185 ENSP00000343542
Homo sapiens (Hsa) hsa8186 ENSP00000353786
(VPS29)		 Q9UBQ0-2
Kluyveromyces lactis (Kla) kla3097 KLLA0E03311g
Mus musculus (Mmu) mmu20877 ENSMUSP00000031418
(MGI:1928344)		 Q9QZ88-2
Neurospora crassa (Ncr) ncr1774 NCU01822.2
Oryza sativa (Osa) osa20832 3635.m00298
Plasmodium falciparum (Pfa) pfa1320 PF14_0064
Rattus norvegicus (Rno) rno8602 ENSRNOP00000001717
(RGD:1308332)		 B2RZ78-1
Saccharomyces cerevisiae (Sce) sce2758 YHR012W
(S000001054)
Schizosaccharomyces pombe (Spo) spo2303 SPAC15E1.06 Q9UTI5
Yarrowia lipolytica (Yli) yli4686 YALI0E19987g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC15E1.06
GO:0005768 endosome C
IMP
SpoSPAC15E1.06
IPI
SceS000001054
ISS
SpoSPAC15E1.06
GO:0005771 multivesicular body C
IDA
AthAt3g47810
GO:0005792 microsome C
IDA
AthAt3g47810
GO:0005829 cytosol C
IDA
SpoSPAC15E1.06
GO:0016020 membrane C
IDA
AthAt3g47810
GO:0030904 retromer complex C
IDA
AthAt3g47810
IMP
SceS000001054
SpoSPAC15E1.06
IPI
SceS000001054
ISS
AthAt3g47810
SpoSPAC15E1.06
GO:0030906 retromer complex, inner shell C
IPI
SceS000001054
GO:0004722 protein serine/threonine phosphatase
activity		 F
ISS
AthAt3g47810
GO:0008565 protein transporter activity F
IMP
SceS000001054
IPI
SceS000001054
GO:0016787 hydrolase activity F
ISS
SpoSPAC15E1.06
GO:0006623 protein targeting to vacuole P
IMP
AthAt3g47810
GO:0006886 intracellular protein transport P
IMP
SpoSPAC15E1.06
GO:0006896 Golgi to vacuole transport P
ISS
MmuMGI:1928344
GO:0008333 endosome to lysosome transport P
ISS
AthAt3g47810
GO:0016477 cell migration P
IMP
CelWBGene00014234
GO:0030437 ascospore formation P
IMP
SpoSPAC15E1.06
GO:0042147 retrograde transport, endosome to
Golgi		 P
IMP
SpoSPAC15E1.06
IPI
SceS000001054

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC15E1.06
(Q9UTI5)		 YHR012W
(S000001054)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC15E1.06
GO:0005768 endosome C
IMP
SpoSPAC15E1.06
IPI
SceS000001054
ISS
SpoSPAC15E1.06
GO:0005829 cytosol C
IDA
SpoSPAC15E1.06
GO:0030904 retromer complex C
IMP
SceS000001054
SpoSPAC15E1.06
IPI
SceS000001054
ISS
SpoSPAC15E1.06
GO:0030906 retromer complex, inner shell C
IPI
SceS000001054
GO:0008565 protein transporter activity F
IMP
SceS000001054
IPI
SceS000001054
GO:0016787 hydrolase activity F
ISS
SpoSPAC15E1.06
GO:0006886 intracellular protein transport P
IMP
SpoSPAC15E1.06
GO:0030437 ascospore formation P
IMP
SpoSPAC15E1.06
GO:0042147 retrograde transport, endosome to
Golgi		 P
IMP
SpoSPAC15E1.06
IPI
SceS000001054

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Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:

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