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Search term: YHR065C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRP3
SGD link S000001107
Alternative ID YHR065C
Description Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity
Synonyms YHR065C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0330 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g60990 GI:15239492
Caenorhabditis elegans (Cel) CE00337
(WBGene00012059)		 GI:17555296 P34580
Drosophila melanogaster (Dme) 7296165
(KH1)		 GI:19920478
Drosophila melanogaster (Dme) 7298752 GI:7298752 Q9VIF6
Homo sapiens (Hsa) Hs8922976
(DDX28)		 GI:8922976
Homo sapiens (Hsa) Hs20149629
(DDX47)		 GI:20149629 Q9UI98
Saccharomyces cerevisiae (Sce) YHR065c
(S000001107)		 GI:6321856
Schizosaccharomyces pombe (Spo) SPAC823.08c GI:19114747 Q9P6N8
Encephalitozoon cuniculi (Ecu) ECU10g0440 GI:19074653 Q8SR63
Arabidopsis thaliana (Ath) At5g60990 GI:15239492
Caenorhabditis elegans (Cel) CE00337
(WBGene00012059)		 GI:17555296 P34580
Drosophila melanogaster (Dme) 7296165
(KH1)		 GI:19920478
Drosophila melanogaster (Dme) 7298752 GI:7298752 Q9VIF6
Homo sapiens (Hsa) Hs8922976
(DDX28)		 GI:8922976
Homo sapiens (Hsa) Hs20149629
(DDX47)		 GI:20149629 Q9UI98
Saccharomyces cerevisiae (Sce) YHR065c
(S000001107)		 GI:6321856
Schizosaccharomyces pombe (Spo) SPAC823.08c GI:19114747 Q9P6N8
Encephalitozoon cuniculi (Ecu) ECU10g0440 GI:19074653 Q8SR63
Arabidopsis thaliana (Ath) At5g60990 GI:15239492
Caenorhabditis elegans (Cel) CE00337
(WBGene00012059)		 GI:17555296 P34580
Drosophila melanogaster (Dme) 7296165
(KH1)		 GI:19920478
Drosophila melanogaster (Dme) 7298752 GI:7298752 Q9VIF6
Homo sapiens (Hsa) Hs8922976
(DDX28)		 GI:8922976
Homo sapiens (Hsa) Hs20149629
(DDX47)		 GI:20149629 Q9UI98
Saccharomyces cerevisiae (Sce) YHR065c
(S000001107)		 GI:6321856
Schizosaccharomyces pombe (Spo) SPAC823.08c GI:19114747 Q9P6N8
Encephalitozoon cuniculi (Ecu) ECU10g0440 GI:19074653 Q8SR63


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g60990
DmeKH1
GO:0005634 nucleus C
IDA
SpoSPAC823.08c
GO:0005730 nucleolus C
IDA
HsaDDX47
ISS
SpoSPAC823.08c
TAS
SceS000001107
GO:0005739 mitochondrion C
IDA
HsaDDX28
GO:0005829 cytosol C
IDA
SpoSPAC823.08c
GO:0042645 mitochondrial nucleoid C
IDA
HsaDDX28
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeKH1
SpoSPAC823.08c
TAS
SceS000001107
GO:0004386 helicase activity F
ISS
DmeKH1
GO:0005515 protein binding F
IPI
HsaDDX47
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g60990
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001107
GO:0000003 reproduction P
IMP
CelWBGene00012059
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001107
GO:0002119 nematode larval development P
IMP
CelWBGene00012059
GO:0006364 rRNA processing P
ISS
SpoSPAC823.08c
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012059
GO:0010171 body morphogenesis P
IMP
CelWBGene00012059
GO:0016063 rhodopsin biosynthetic process P
IMP
DmeKH1
GO:0040007 growth P
IMP
CelWBGene00012059
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012059
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012059

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6092

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX47 GI:20149629 Q9UI98
Pan troglodytes (Ptr) DDX47 GI:114643639
Canis familiaris (Cfa) DDX47 GI:73997167
Mus musculus (Mmu) Ddx47
(MGI:1915005)		 GI:27229058 Q3TEK1
Gallus gallus (Gga) DDX47 GI:56119032
Drosophila melanogaster (Dme) CG9253
(FBgn0032919)		 GI:24585582
Anopheles gambiae (Aga) AgaP_AGAP009808 GI:158298749
Caenorhabditis elegans (Cel) T26G10.1
(CE00337;
WBGene00012059)		 GI:17555296 P34580
Schizosaccharomyces pombe (Spo) SPAC823.08c GI:19114747 Q9P6N8
Saccharomyces cerevisiae (Sce) RRP3
(S000001107)		 GI:37362659
Kluyveromyces lactis (Kla) KLLA0C14608g GI:50305787
Eremothecium gossypii (Ego) AGOS_AAL041C GI:45184783
Magnaporthe grisea (Mgr) MGG_11672 GI:145611832
Neurospora crassa (Ncr) NCU04504.1 GI:32406488
Arabidopsis thaliana (Ath) AT5G60990 GI:18424420
Oryza sativa (Osa) Os03g0669000 GI:115454521
Plasmodium falciparum (Pfa) PFB0860c GI:124801418


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g60990
MmuMGI:1915005
PfaPFB0860c
GO:0005634 nucleus C
IDA
SpoSPAC823.08c
GO:0005730 nucleolus C
IDA
HsaDDX47
ISS
SpoSPAC823.08c
TAS
SceS000001107
GO:0005829 cytosol C
IDA
SpoSPAC823.08c
GO:0003674 molecular_function F
ND
MmuMGI:1915005
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0032919
PfaPFB0860c
SpoSPAC823.08c
TAS
SceS000001107
GO:0005515 protein binding F
IPI
HsaDDX47
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g60990
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001107
GO:0000003 reproduction P
IMP
CelWBGene00012059
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001107
GO:0002119 nematode larval development P
IMP
CelWBGene00012059
GO:0006364 rRNA processing P
ISS
SpoSPAC823.08c
GO:0008150 biological_process P
ND
MmuMGI:1915005
PfaPFB0860c
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012059
GO:0010171 body morphogenesis P
IMP
CelWBGene00012059
GO:0040007 growth P
IMP
CelWBGene00012059
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012059
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012059

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2172

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12079 ENSANGP00000015831
Ashbya gossypii (Ago) ago146 AAL041C
Arabidopsis thaliana (Ath) ath28188 At5g60990.1
Caenorhabditis elegans (Cel) cel16430 T26G10.1
(CE00337;
WBGene00012059)
Candida glabrata (Cgl) cgl3471 CAGL0J10912g
Cryptococcus neoformans (Cne) cne288 162.m02817
Dictyostelium discoideum (Ddi) ddi6682 DDB0206406
Debaryomyces hansenii (Dha) dha3621 DEHA0E08583
Drosophila melanogaster (Dme) dme3216 CG9253-PA
(FBgn0032919)
Encephalitozoon cuniculi (Ecu) ecu569 19074653
Takifugu rubripes (Fru) fru20442 SINFRUP00000152855
Gallus gallus (Gga) gga761 ENSGALP00000019220
(DDX47)		 Q5ZLB0
Homo sapiens (Hsa) hsa7154 ENSP00000350698
(DDX47)		 Q9H0S4
Kluyveromyces lactis (Kla) kla1853 KLLA0C14608g
Mus musculus (Mmu) mmu22928 ENSMUSP00000032326
(MGI:1915005)		 Q9CWX9
Neurospora crassa (Ncr) ncr4373 NCU04504.2
Oryza sativa (Osa) osa53220 5955.m00124
Oryza sativa (Osa) osa51609 5981.m00118
Oryza sativa (Osa) osa63474 6737.m00167
Plasmodium falciparum (Pfa) pfa124 PFB0860c
Rattus norvegicus (Rno) rno22423 ENSRNOP00000011096
(RGD:1310437)		 Q5BIZ6
Saccharomyces cerevisiae (Sce) sce2823 YHR065C
(S000001107)
Schizosaccharomyces pombe (Spo) spo4374 SPAC823.08c Q9P6N8
Yarrowia lipolytica (Yli) yli411 YALI0A12133g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g60990
MmuMGI:1915005
PfaPFB0860c
GO:0005634 nucleus C
IDA
SpoSPAC823.08c
GO:0005730 nucleolus C
ISS
SpoSPAC823.08c
TAS
SceS000001107
GO:0005829 cytosol C
IDA
SpoSPAC823.08c
GO:0003674 molecular_function F
ND
MmuMGI:1915005
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0032919
PfaPFB0860c
SpoSPAC823.08c
TAS
SceS000001107
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g60990
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001107
GO:0000003 reproduction P
IMP
CelWBGene00012059
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001107
GO:0002119 nematode larval development P
IMP
CelWBGene00012059
GO:0006364 rRNA processing P
ISS
SpoSPAC823.08c
GO:0008150 biological_process P
ND
MmuMGI:1915005
PfaPFB0860c
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012059
GO:0010171 body morphogenesis P
IMP
CelWBGene00012059
GO:0040007 growth P
IMP
CelWBGene00012059
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012059
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012059

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC823.08c
(Q9P6N8)		 YHR065C
(S000001107)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC823.08c
GO:0005730 nucleolus C
ISS
SpoSPAC823.08c
TAS
SceS000001107
GO:0005829 cytosol C
IDA
SpoSPAC823.08c
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPAC823.08c
TAS
SceS000001107
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001107
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001107
GO:0006364 rRNA processing P
ISS
SpoSPAC823.08c

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Search for gene by ID or name:

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GO info in one table:

s.khadayate@ucl.ac.uk