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Search term: YHR081W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LRP1
SGD link S000001123
Alternative ID YHR081W
Description Nuclear exosome-associated nucleic acid binding protein; involved in RNA processing, surveillance, degradation, tethering, and export; homolog of mammalian nuclear matrix protein C1D involved in regulation of DNA repair and recombination
Synonyms YHR081W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4835 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA-binding protein C1D involved in regulation of double-strand break repair

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g25080 GI:15238696
Caenorhabditis elegans (Cel) CE22363
(WBGene00021785)		 GI:17537383 Q9N3J4
Drosophila melanogaster (Dme) 7293161 GI:7293161
Homo sapiens (Hsa) Hs5453583
(C1D)		 GI:5453583 Q13901
Saccharomyces cerevisiae (Sce) YHR081w
(S000001123)		 GI:6321873 P38801
Schizosaccharomyces pombe (Spo) SPCC1739.07 GI:19075915 O74469


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000001123
S000001123
ISS
SpoSPCC1739.07
GO:0000790 nuclear chromatin C
IDA
SpoSPCC1739.07
GO:0005575 cellular_component C
ND
AthAt5g25080
GO:0005634 nucleus C
IDA
SpoSPCC1739.07
GO:0005730 nucleolus C
IDA
SpoSPCC1739.07
GO:0005829 cytosol C
IDA
SpoSPCC1739.07
GO:0003674 molecular_function F
ND
AthAt5g25080
GO:0003677 DNA binding F
ISS
SpoSPCC1739.07
GO:0003690 double-stranded DNA binding F
IDA
SceS000001123
GO:0003725 double-stranded RNA binding F
IDA
SceS000001123
GO:0005515 protein binding F
IPI
SpoSPCC1739.07
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
ISS
SpoSPCC1739.07
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000001123
GO:0000973 posttranscriptional tethering of RNA polymerase II
gene DNA at nuclear periphery		 P
IMP
SceS000001123
GO:0006281 DNA repair P
IGI
SpoSPCC1739.07
GO:0006364 rRNA processing P
RCA
SceS000001123
GO:0006401 RNA catabolic process P
RCA
SceS000001123
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1739.07
GO:0008150 biological_process P
ND
AthAt5g25080
GO:0016180 snRNA processing P
ISS
SpoSPCC1739.07
GO:0031123 RNA 3'-end processing P
ISS
SpoSPCC1739.07
RCA
SceS000001123
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000001123
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000001123
GO:0043144 snoRNA processing P
ISS
SpoSPCC1739.07
GO:0071028 nuclear mRNA surveillance P
IMP
SceS000001123
GO:0071033 nuclear retention of pre-mRNA at the site of
transcription		 P
IGI
SceS000001123
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IMP
SceS000001123

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48761

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) LRP1
(S000001123)		 GI:6321873 P38801
Kluyveromyces lactis (Kla) KLLA0E17061g GI:50309417


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000001123
S000001123
GO:0003690 double-stranded DNA binding F
IDA
SceS000001123
GO:0003725 double-stranded RNA binding F
IDA
SceS000001123
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000001123
GO:0000973 posttranscriptional tethering of RNA polymerase II
gene DNA at nuclear periphery		 P
IMP
SceS000001123
GO:0006364 rRNA processing P
RCA
SceS000001123
GO:0006401 RNA catabolic process P
RCA
SceS000001123
GO:0031123 RNA 3'-end processing P
RCA
SceS000001123
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000001123
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000001123
GO:0071028 nuclear mRNA surveillance P
IMP
SceS000001123
GO:0071033 nuclear retention of pre-mRNA at the site of
transcription		 P
IGI
SceS000001123
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IMP
SceS000001123

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_24758

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago2039 ADR297W
Candida glabrata (Cgl) cgl1371 CAGL0F03289g
Debaryomyces hansenii (Dha) dha5629 DEHA0F27797g
Kluyveromyces lactis (Kla) kla3715 KLLA0E17061g
Saccharomyces cerevisiae (Sce) sce2846 YHR081W
(S000001123)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000001123
S000001123
GO:0003690 double-stranded DNA binding F
IDA
SceS000001123
GO:0003725 double-stranded RNA binding F
IDA
SceS000001123
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000001123
GO:0000973 posttranscriptional tethering of RNA polymerase II
gene DNA at nuclear periphery		 P
IMP
SceS000001123
GO:0006364 rRNA processing P
RCA
SceS000001123
GO:0006401 RNA catabolic process P
RCA
SceS000001123
GO:0031123 RNA 3'-end processing P
RCA
SceS000001123
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000001123
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000001123
GO:0071028 nuclear mRNA surveillance P
IMP
SceS000001123
GO:0071033 nuclear retention of pre-mRNA at the site of
transcription		 P
IGI
SceS000001123
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IMP
SceS000001123

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1739.07
(O74469)		 YHR081W
(S000001123)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000001123
S000001123
ISS
SpoSPCC1739.07
GO:0000790 nuclear chromatin C
IDA
SpoSPCC1739.07
GO:0005634 nucleus C
IDA
SpoSPCC1739.07
GO:0005730 nucleolus C
IDA
SpoSPCC1739.07
GO:0005829 cytosol C
IDA
SpoSPCC1739.07
GO:0003677 DNA binding F
ISS
SpoSPCC1739.07
GO:0003690 double-stranded DNA binding F
IDA
SceS000001123
GO:0003725 double-stranded RNA binding F
IDA
SceS000001123
GO:0005515 protein binding F
IPI
SpoSPCC1739.07
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
ISS
SpoSPCC1739.07
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000001123
GO:0000973 posttranscriptional tethering of RNA polymerase II
gene DNA at nuclear periphery		 P
IMP
SceS000001123
GO:0006281 DNA repair P
IGI
SpoSPCC1739.07
GO:0006364 rRNA processing P
RCA
SceS000001123
GO:0006401 RNA catabolic process P
RCA
SceS000001123
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1739.07
GO:0016180 snRNA processing P
ISS
SpoSPCC1739.07
GO:0031123 RNA 3'-end processing P
ISS
SpoSPCC1739.07
RCA
SceS000001123
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000001123
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000001123
GO:0043144 snoRNA processing P
ISS
SpoSPCC1739.07
GO:0071028 nuclear mRNA surveillance P
IMP
SceS000001123
GO:0071033 nuclear retention of pre-mRNA at the site of
transcription		 P
IGI
SceS000001123
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process		 P
IGI
SceS000001123
IMP
SceS000001123
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IMP
SceS000001123

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Search for GO info:  

GO info in one table:

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