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Search term: YHR088W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPF1
SGD link S000001130
Alternative ID YHR088W
Description Nucleolar protein involved in the assembly and export of the large ribosomal subunit; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA
Synonyms YHR088W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2780 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Ribosome biogenesis protein RPF1, contains IMP4 domain

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g01560 GI:18411672
Caenorhabditis elegans (Cel) CE28332
(WBGene00009711)		 GI:17534031 P54073
Drosophila melanogaster (Dme) 7297917
(FBgn0032408)		 GI:17137746
Homo sapiens (Hsa) Hs13376605 GI:13376605
Saccharomyces cerevisiae (Sce) YHR088w
(S000001130)		 GI:6321880 P38805
Schizosaccharomyces pombe (Spo) SPAC4F8.04 GI:19114780 O14180
Encephalitozoon cuniculi (Ecu) ECU08g1130 GI:19173440 Q8SUP2
Encephalitozoon cuniculi (Ecu) ECU11g1940 GI:19074994 Q8STZ7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g01560
GO:0005634 nucleus C
IDA
SpoSPAC4F8.04
GO:0005730 nucleolus C
IDA
SceS000001130
SpoSPAC4F8.04
IPI
SceS000001130
ISS
DmeFBgn0032408
SpoSPAC4F8.04
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC4F8.04
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001130
GO:0003674 molecular_function F
ND
AthAt4g01560
GO:0003723 RNA binding F
ISS
DmeFBgn0032408
SpoSPAC4F8.04
GO:0042134 rRNA primary transcript binding F
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000027 ribosomal large subunit assembly P
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000054 ribosomal subunit export from nucleus P
RCA
SceS000001130
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000001130
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0002119 nematode larval development P
IMP
CelWBGene00009711
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009711
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt4g01560
GO:0040007 growth P
IMP
CelWBGene00009711
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009711
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC4F8.04
GO:0042255 ribosome assembly P
RCA
SceS000001130
GO:0042273 ribosomal large subunit biogenesis P
RCA
SceS000001130

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68728

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) BXDC5 GI:145275210
Pan troglodytes (Ptr) BXDC5 GI:114557449
Canis familiaris (Cfa) BXDC5 GI:57088279
Mus musculus (Mmu) Bxdc5 GI:21312560
Rattus norvegicus (Rno) Bxdc5
(RGD:1559755)		 GI:62644541
Gallus gallus (Gga) BXDC5 GI:118094457
Drosophila melanogaster (Dme) CG6712
(FBgn0032408)		 GI:17137746
Anopheles gambiae (Aga) AgaP_AGAP009968 GI:58392102
Caenorhabditis elegans (Cel) F44G4.1
(CE28332;
WBGene00009711)		 GI:17534031 P54073
Schizosaccharomyces pombe (Spo) SPAC4F8.04 GI:19114780 O14180
Saccharomyces cerevisiae (Sce) RPF1
(S000001130)		 GI:6321880 P38805
Kluyveromyces lactis (Kla) KLLA0F21670g GI:50312031
Eremothecium gossypii (Ego) AGOS_AEL093C GI:45190514
Magnaporthe grisea (Mgr) MGG_06322 GI:39976839
Neurospora crassa (Ncr) NCU00404.1 GI:32403754
Arabidopsis thaliana (Ath) MEE49 GI:18411672
Oryza sativa (Osa) Os06g0137500 GI:115466268
Plasmodium falciparum (Pfa) PFI1070c GI:124506984


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthMEE49
GO:0005634 nucleus C
IDA
SpoSPAC4F8.04
GO:0005730 nucleolus C
IDA
SceS000001130
SpoSPAC4F8.04
IPI
SceS000001130
ISS
DmeFBgn0032408
SpoSPAC4F8.04
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC4F8.04
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001130
GO:0003674 molecular_function F
ND
AthMEE49
GO:0003723 RNA binding F
ISS
DmeFBgn0032408
SpoSPAC4F8.04
GO:0042134 rRNA primary transcript binding F
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000027 ribosomal large subunit assembly P
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000054 ribosomal subunit export from nucleus P
RCA
SceS000001130
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000001130
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0002119 nematode larval development P
IMP
CelWBGene00009711
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009711
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthMEE49
GO:0040007 growth P
IMP
CelWBGene00009711
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009711
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC4F8.04
GO:0042255 ribosome assembly P
RCA
SceS000001130
GO:0042273 ribosomal large subunit biogenesis P
RCA
SceS000001130

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2577

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12262 ENSANGP00000006009
Ashbya gossypii (Ago) ago2413 AEL093C
Arabidopsis thaliana (Ath) ath18017 At4g01560.1
Caenorhabditis elegans (Cel) cel9169 F44G4.1
(CE28332;
WBGene00009711)
Candida glabrata (Cgl) cgl2152 CAGL0H02079g
Cryptococcus neoformans (Cne) cne5404 179.m00257
Dictyostelium discoideum (Ddi) ddi7792 DDB0186705
Debaryomyces hansenii (Dha) dha6542 DEHA0G18843g
Drosophila melanogaster (Dme) dme2090 CG6712-PA
(FBgn0032408)
Danio rerio (Dre) dre2522 ENSDARP00000026391
(zgc:86604)		 Q6IQU6
Danio rerio (Dre) dre2523 ENSDARP00000041638
Encephalitozoon cuniculi (Ecu) ecu1082 19074994
Takifugu rubripes (Fru) fru16540 SINFRUP00000148590
Gallus gallus (Gga) gga22577 ENSGALP00000014284
(BXDC5)
Homo sapiens (Hsa) hsa1417 ENSP00000263716
Kluyveromyces lactis (Kla) kla5047 KLLA0F21670g
Mus musculus (Mmu) mmu17692 ENSMUSP00000029838
(MGI:1917535)		 Q7TND5
Neurospora crassa (Ncr) ncr390 NCU00404.2
Oryza sativa (Osa) osa864 1912.m00161
Plasmodium falciparum (Pfa) pfa4680 PFI1070c
Rattus norvegicus (Rno) rno17157 ENSRNOP00000021705
(RGD:1559755)		 Q5RJS9
Saccharomyces cerevisiae (Sce) sce2854 YHR088W
(S000001130)
Schizosaccharomyces pombe (Spo) spo3114 SPAC4F8.04 O14180
Yarrowia lipolytica (Yli) yli6250 YALI0F21483g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g01560
MmuMGI:1917535
GO:0005634 nucleus C
IDA
SpoSPAC4F8.04
GO:0005730 nucleolus C
IDA
SceS000001130
SpoSPAC4F8.04
IPI
SceS000001130
ISS
DmeFBgn0032408
SpoSPAC4F8.04
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC4F8.04
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001130
GO:0003674 molecular_function F
ND
AthAt4g01560
MmuMGI:1917535
GO:0003723 RNA binding F
ISS
DmeFBgn0032408
SpoSPAC4F8.04
GO:0042134 rRNA primary transcript binding F
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000027 ribosomal large subunit assembly P
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000054 ribosomal subunit export from nucleus P
RCA
SceS000001130
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000001130
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0002119 nematode larval development P
IMP
CelWBGene00009711
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009711
GO:0008150 biological_process P
ND
MmuMGI:1917535
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt4g01560
GO:0040007 growth P
IMP
CelWBGene00009711
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009711
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC4F8.04
GO:0042255 ribosome assembly P
RCA
SceS000001130
GO:0042273 ribosomal large subunit biogenesis P
RCA
SceS000001130

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4F8.04
(O14180)		 YHR088W
(S000001130)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC4F8.04
GO:0005730 nucleolus C
IDA
SceS000001130
SpoSPAC4F8.04
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC4F8.04
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001130
GO:0003723 RNA binding F
ISS
SpoSPAC4F8.04
GO:0042134 rRNA primary transcript binding F
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000027 ribosomal large subunit assembly P
IPI
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000054 ribosomal subunit export from nucleus P
RCA
SceS000001130
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000001130
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001130
ISS
SpoSPAC4F8.04
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC4F8.04
GO:0042255 ribosome assembly P
RCA
SceS000001130
GO:0042273 ribosomal large subunit biogenesis P
RCA
SceS000001130

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk