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Search term: YHR098C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SFB3
SGD link S000001140
Alternative ID YHR098C
Description Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat, required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sec24p and Sfb2p
Synonyms YHR098C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1984 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vesicle coat complex COPII, subunit SFB3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g44340 GI:11358202
Arabidopsis thaliana (Ath) At4g32640 GI:15233868
Caenorhabditis elegans (Cel) CE05594
(WBGene00004755)
GI:17539780 Q19371
Drosophila melanogaster (Dme) 7295985 GI:20129169
Homo sapiens (Hsa) Hs4758634 GI:4758634
Homo sapiens (Hsa) Hs7662659 GI:7662659
Saccharomyces cerevisiae (Sce) YHR098c
(S000001140)
GI:6321890 P38810
Schizosaccharomyces pombe (Spo) SPBC4.03c GI:19112268 Q9USS7
Encephalitozoon cuniculi (Ecu) ECU02g1460 GI:19074065 Q8SW91


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
ISS
SpoSPBC4.03c
GO:0005829 cytosol C
IDA
SpoSPBC4.03c
GO:0030127 COPII vesicle coat C
IDA
SceS000001140
ISS
SpoSPBC4.03c
GO:0043332 mating projection tip C
IDA
SceS000001140
GO:0005048 signal sequence binding F
ISS
SceS000001140
GO:0005215 transporter activity F
ISS
AthAt3g44340
GO:0008270 zinc ion binding F
ISS
SpoSPBC4.03c
GO:0000003 reproduction P
IMP
CelWBGene00004755
GO:0002119 nematode larval development P
IMP
CelWBGene00004755
GO:0006886 intracellular protein transport P
IC
SpoSPBC4.03c
GO:0006888 ER to Golgi vesicle-mediated transport P
ISS
SpoSPBC4.03c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004755
GO:0006979 response to oxidative stress P
IEP
AthAt3g44340
GO:0016192 vesicle-mediated transport P
ISS
AthAt3g44340
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway
P
NAS
SpoSPBC4.03c
GO:0040007 growth P
IMP
CelWBGene00004755
GO:0090110 cargo loading into COPII-coated
vesicle
P
IDA
SceS000001140
IMP
SceS000001140

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3615

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SEC24C GI:38373669
Pan troglodytes (Ptr) SEC24C GI:114631259
Canis familiaris (Cfa) SEC24C GI:73952943
Mus musculus (Mmu) Sec24c
(MGI:1919746)
GI:28916673 Q3V222
Rattus norvegicus (Rno) LOC685144 GI:109501160
Gallus gallus (Gga) SEC24C GI:50749392
Drosophila melanogaster (Dme) CG10882
(FBgn0031408)
GI:24581061
Caenorhabditis elegans (Cel) sec-24.1
(CE05594;
WBGene00004755)
GI:17539780 Q19371
Schizosaccharomyces pombe (Spo) SPBC4.03c GI:19112268 Q9USS7
Saccharomyces cerevisiae (Sce) SFB3
(S000001140)
GI:6321890 P38810
Kluyveromyces lactis (Kla) KLLA0F22110g GI:50312071
Eremothecium gossypii (Ego) AGOS_ACR151W GI:45185837
Magnaporthe grisea (Mgr) MGG_06569 GI:145608518
Neurospora crassa (Ncr) NCU06868.1 GI:32413348
Arabidopsis thaliana (Ath) CEF GI:18407762
Arabidopsis thaliana (Ath) AT4G32640 GI:186515615
Oryza sativa (Osa) Os12g0430000 GI:115488380


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
ISS
SpoSPBC4.03c
GO:0005829 cytosol C
IDA
SpoSPBC4.03c
GO:0010319 stromule C
IDA
AthCEF
GO:0030127 COPII vesicle coat C
IDA
SceS000001140
ISS
SpoSPBC4.03c
NAS
HsaSEC24C
GO:0043332 mating projection tip C
IDA
SceS000001140
GO:0003674 molecular_function F
ND
HsaSEC24C
GO:0005048 signal sequence binding F
ISS
SceS000001140
GO:0005215 transporter activity F
ISS
AthCEF
GO:0005515 protein binding F
IPI
HsaSEC24C
MmuMGI:1919746
GO:0008270 zinc ion binding F
ISS
SpoSPBC4.03c
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase
activity
F
ISS
AthCEF
GO:0000003 reproduction P
IMP
CelWBGene00004755
GO:0002119 nematode larval development P
IMP
CelWBGene00004755
GO:0006000 fructose metabolic process P
ISS
AthCEF
GO:0006886 intracellular protein transport P
IC
SpoSPBC4.03c
GO:0006888 ER to Golgi vesicle-mediated transport P
EXP
HsaSEC24C
ISS
SpoSPBC4.03c
NAS
HsaSEC24C
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004755
GO:0006979 response to oxidative stress P
IEP
AthCEF
GO:0009409 response to cold P
IEP
AthCEF
GO:0009773 photosynthetic electron transport in photosystem
I
P
IMP
AthCEF
GO:0016044 cellular membrane organization P
EXP
HsaSEC24C
GO:0016192 vesicle-mediated transport P
ISS
AthCEF
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway
P
NAS
SpoSPBC4.03c
GO:0040007 growth P
IMP
CelWBGene00004755
GO:0090110 cargo loading into COPII-coated
vesicle
P
IDA
SceS000001140
IMP
SceS000001140

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1066

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga10846 ENSANGP00000012422
Ashbya gossypii (Ago) ago1198 ACR151W
Arabidopsis thaliana (Ath) ath15703 At3g44340.1
Arabidopsis thaliana (Ath) ath21364 At4g32640.1
Caenorhabditis elegans (Cel) cel6114 F12F6.6
(CE05594;
WBGene00004755)
Candida glabrata (Cgl) cgl73 CAGL0A01848g
Cryptococcus neoformans (Cne) cne1724 164.m02084
Dictyostelium discoideum (Ddi) ddi6989 DDB0218029
Debaryomyces hansenii (Dha) dha4208 DEHA0E21956g
Drosophila melanogaster (Dme) dme351 CG10882-PA
(FBgn0031408)
Danio rerio (Dre) dre28552 ENSDARP00000003286
Danio rerio (Dre) dre28554 ENSDARP00000034881
Danio rerio (Dre) dre28551 ENSDARP00000035564
(LOC570543)
Danio rerio (Dre) dre28553 ENSDARP00000040553
Encephalitozoon cuniculi (Ecu) ecu144 19074065
Takifugu rubripes (Fru) fru23473 SINFRUP00000152644
Takifugu rubripes (Fru) fru23474 SINFRUP00000152645
Gallus gallus (Gga) gga20474 ENSGALP00000008309
Gallus gallus (Gga) gga20472 ENSGALP00000008310
Gallus gallus (Gga) gga20473 ENSGALP00000008311
(SEC24C)
Gallus gallus (Gga) gga17875 ENSGALP00000019555
(SEC24D)
Gallus gallus (Gga) gga17876 ENSGALP00000019556
Homo sapiens (Hsa) hsa24572 ENSP00000280551
(SEC24D)
O94855-1
Homo sapiens (Hsa) hsa4128 ENSP00000321845
(SEC24C)
P53992
Homo sapiens (Hsa) hsa4127 ENSP00000343405
(SEC24C)
P53992
Kluyveromyces lactis (Kla) kla5067 KLLA0F22110g
Mus musculus (Mmu) mmu17503 ENSMUSP00000035823
(MGI:1916858)
Q6NXL1
Mus musculus (Mmu) mmu7735 ENSMUSP00000045955
(MGI:1919746)
Q3V222
Neurospora crassa (Ncr) ncr6682 NCU06868.2
Oryza sativa (Osa) osa74344 7172.m00138
Plasmodium falciparum (Pfa) pfa3417 PFD0250c
Rattus norvegicus (Rno) rno10960 ENSRNOP00000012269
(RGD:1597739)
B5DEG8
Rattus norvegicus (Rno) rno16957 ENSRNOP00000020433
(RGD:1311720)
Rattus norvegicus (Rno) rno10959 ENSRNOP00000034249
(RGD:1597739)
Rattus norvegicus (Rno) rno23172 ENSRNOP00000038471
Saccharomyces cerevisiae (Sce) sce2864 YHR098C
(S000001140)
Schizosaccharomyces pombe (Spo) spo2566 SPBC4.03c Q9USS7
Yarrowia lipolytica (Yli) yli4442 YALI0E14036g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916858
GO:0005783 endoplasmic reticulum C
ISS
SpoSPBC4.03c
GO:0005829 cytosol C
IDA
SpoSPBC4.03c
GO:0030127 COPII vesicle coat C
IDA
SceS000001140
ISS
SpoSPBC4.03c
GO:0043332 mating projection tip C
IDA
SceS000001140
GO:0003674 molecular_function F
ND
MmuMGI:1916858
GO:0005048 signal sequence binding F
ISS
SceS000001140
GO:0005215 transporter activity F
ISS
AthAt3g44340
GO:0005515 protein binding F
IPI
MmuMGI:1919746
GO:0008270 zinc ion binding F
ISS
SpoSPBC4.03c
GO:0000003 reproduction P
IMP
CelWBGene00004755
GO:0002119 nematode larval development P
IMP
CelWBGene00004755
GO:0006886 intracellular protein transport P
IC
SpoSPBC4.03c
GO:0006888 ER to Golgi vesicle-mediated transport P
ISS
SpoSPBC4.03c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004755
GO:0006979 response to oxidative stress P
IEP
AthAt3g44340
GO:0008150 biological_process P
ND
MmuMGI:1916858
GO:0016192 vesicle-mediated transport P
ISS
AthAt3g44340
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway
P
NAS
SpoSPBC4.03c
GO:0040007 growth P
IMP
CelWBGene00004755
GO:0090110 cargo loading into COPII-coated
vesicle
P
IDA
SceS000001140
IMP
SceS000001140

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC4.03c
(Q9USS7)
YHR098C
(S000001140)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
ISS
SpoSPBC4.03c
GO:0005829 cytosol C
IDA
SpoSPBC4.03c
GO:0030127 COPII vesicle coat C
IDA
SceS000001140
ISS
SpoSPBC4.03c
GO:0043332 mating projection tip C
IDA
SceS000001140
GO:0005048 signal sequence binding F
ISS
SceS000001140
GO:0008270 zinc ion binding F
ISS
SpoSPBC4.03c
GO:0006886 intracellular protein transport P
IC
SpoSPBC4.03c
GO:0006888 ER to Golgi vesicle-mediated transport P
ISS
SpoSPBC4.03c
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway
P
NAS
SpoSPBC4.03c
GO:0090110 cargo loading into COPII-coated
vesicle
P
IDA
SceS000001140
IMP
SceS000001140

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk